These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6096#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 477 fasta sequence [GGCGGCGACTTGTACCCTCTTAGTATTTGCTTTCAGGAAGGCTTGCTAGTCGGTATTCTTAAT-GAGTTTCATCGTTGCTGGAACAAGCCACTGGTTCATTGGAAGGAAGATATATCTTCGGATTTATTCGTGCTATTTCCTTATGGAACCTTGTTAACTAAGATTCGGGTAGCACTACATCATATCATTCGACAGCTTCTAAGAAAAAATTTGGGGATACATGCGTTTCAAATGAGTTTAGCGTATCAACATTTACCGTACTTTCCCCTTATTTTGGAACTGTTATTACATGAAGTGTTGGAGGTTGAAGCTGCCTCCAAAATTCCAACGCCAGATCCATTACTACCGCAAGTTGTAGCATTTATTCAAGAATTCTCCAATTTTCTGGAGATTTTGGCCCATTGTTCTCGTAAAACCGATGTCACTTGGTGGCCTCTTTTATTCATTACCATCGGAAGGAAACCAAAAGATCTATTT] [+] EMBL CD147782 [GGCGGCGACTTGTACCCTCTTAGTATTTGCTTTCAGGAAGGCTTGCTAGTCGGTATTCTTAAT GAGTTTCATCGTTGCTGGAACAAGCCACTGGTTCATTGGAAGGAAGATATATCTTCGGATTTATTCGTGCTATTTCCTTATGGAACCTTGTTAACTAAGATTCGGGTAGCACTACATCATATCATTCGACAGCTTCTAAGAAAAAATTTGGGGATACATGCGTTTCAAATGAGTTTAGCGTATCAACATTTACCGTACTTTCCCCTTATTTTGGAACTGTTATTACATGAAGTGTTGGAGGTTGAAGCTGCCTCCAAAATTCCAACGCCAGATCCATTACTACCGCAAGTTGTAGCATTTATTCAAGAATTCTCCAATTTTCTGGAGATTTTGGCCCATTGTTCTCGTAAAACCGATGTCACTTG ] [+] EMBL CD160189 [ caTAGTCGGTATTCTTAATAGAGTTTCATCGTTGCTGGAACAAGCCACTGGTTCATTGGAAGGAAGATATATCTTCGGATTTATTCGTGCTATTTCCTTATGGAACCTTGTTAACTAAGATTCGGGTAGCACTACATCATATCATTCGACAGCTTCTAAGAAAAAATTTGGGGATACATGCGTTTCAAATGAGTTTAGCGTATCAACATTTACCGTACTTTCCCCTTATTTTGGAACTGTTATTACATGAAGTGTTGGAGGTTGAAGCTGACTCCAAAATTCCAACGCCAGATCCATTACTACCGCAAGTTGTAGCATTTATTCAAGAATTCTCCAATTTTCTGGAGATTTTGGCCCATTGTTCTCGTAAAACCGATGTCACTTGGTGGCCTCT ] [-] EMBL CD195638 [ tTTCGGGTAGCACTACATCATATCATTCGACAGCTTCTAAGAAAAAATTTGGGGATACATGCGTTTCAAATGAGTTTAGCGTATCAACATTTACCGTACTTTCCCCTTATTTTGGAACTGTTATTACATGAAGTGTTGGAGGTTGAAGCTGCCTCCAAAATTCCAACGCCAGATCCATTACTACCGCAAGTTGTAGCATTTATTCAAGAATTCTCCAATTTTCTGGAGATTTTGGCCCATTGTTCTCGTAAAACCGATGTCACTTGGTGGCCTCATTTATTCATTACCATCGGAAGGAAACCAAAAGATCTATTT] consensusID : consensus_6096#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence [TGGAAATTTCTGTGGGAAGTAGAAAGCACAAAAAAAAGCACTTTCAAAATCTTCTGTAACCAGAAATATTTTCATGACTGTCCTTAGACCTAAGTAGGACAATGCAAAACAGTCAAAATACGTCAAATCAAATAGGTATGAAAAATTTATTCGACTTAACCTTAGTTAACAAAGTTCCATAAGGAAATAGCACGAATAAATCCGAAGATATATCTTCCTTCAATTG] [+] EMBL CD130330 [TGGAAATTTCTGTGGGAAGTAGAAAGCACAAAAAAAAGCACTTTCAAAATCTTCTGTAACCAGAAATATTTTCATGACTGTCCTTAGACCTAAGTAGGACAATGCAAAACAGTCAAAATACGTCAAATCAAATAGGTATGAAAAATTTATTCGACTTAACCTTAGTTAACAAAGTTCCATAAGGAAATAGCACGAATAAATCCGAAGATATATCTTCCTTCAATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6096#0 GGCGGCGACTTGTACCCTCTTAGTATTTGCTTTCAGGAAGGCTTGCTAGTCGGTATTCTT 60 consensus_6096#1 ------------------------------------------------------------ consensus_6096#0 AATGAGTTTCATCGTTGCTGGAACAAGCCACTGGTTCATTGGAAGGAAGATATATCTTCG 120 consensus_6096#1 ------------------------------------------------------------ consensus_6096#0 GATTTATTCGTGCTATTTCCTTATGGAACCTTGTTAACTAAGATTCGGGTAGCACTACAT 180 consensus_6096#1 ------------------------------------------------------------ consensus_6096#0 CATATCATTCGACAGCTTCTAAGAAAAAATTTG-GGGATACATGCGTTTCAAATGAGTTT 239 consensus_6096#1 ---------------------TGGAAATTTCTGTGGGAAGTAGAAAGCACAAAAAAAAGC 39 * *** * ** **** * **** * consensus_6096#0 AGCGTATCAACATTTACCGTACTTTCCCCTTATTTTGGAACTGTTATTACATGAAGTGTT 299 consensus_6096#1 AC--TTTCAAAATCTTCTGTAACCAGAAATATTTTCATGACTGTCCTTAGACCTAA-GTA 96 * * **** ** * * *** * *** ***** *** * * ** consensus_6096#0 GGAGGTTGAAGCTGCCTCCAAAATTCCAACGCCAGATCCATTACTACCGCAAGTTGTAGC 359 consensus_6096#1 GGACAATGCAAA-ACAGTCAAAAT----ACGTCAAATCAAATA-------GGTATGAAAA 144 *** ** * * ****** *** ** *** * ** ** * consensus_6096#0 ATTTATTCAAGAATTCTCCAATTTTCTGGAGATTTTG-GCCCATTGTTCTCGTAAAACCG 418 consensus_6096#1 ATTTATTCGACTTAACCTTAGTTAACAAAGTTCCATAAGGAAATAGCACGAATAAATCCG 204 ******** * * * ** * * * ** * * **** *** consensus_6096#0 ATGTCACTTGGTGGCCTCTTTTATTCATTACCATCGGAAGGAAACCAAAAGATCTATTT 477 consensus_6096#1 AAGATATAT-----CTTCCTTCAATTG-------------------------------- 226 * * * * * ** ** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||