These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6097#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 893 fasta sequence [CTGGCACGTTTCAGAAGACATCGCTACAAGTCGTTCATCATGCCTCGGATTAACATCAAAGGGGGTGTTTGGAGGAACACTGAGGATGAAATTCTCAAAGCTGCTGTTATGAAATATGGCAAGAATCAGTGGGCAAGGATAGCTTCTTTGCTACACCGCAAAGCCGCTAAACAGTGCAAAGCTAGATGGTACGAATGGCTTGATCCCAGTGTCAAGAAAACAGAGTGGAGCCGTGAAGAAGACGAAAAGTTACTACACCTTGCAAAGCTTATGCCAACTCAGTGGCGAACAATCGCTCCGATAGCTGGGAGAACTGCAAACCAATGTTTGGAACGCTATGAATACCTCTTGGACAAAGCACAAAACAGAGAAGGATTATCCGCAGAGGAGGATCCTAAACGCCTTCGCCCTGGAGAAATAGATCCAAATCCGGAGACCAAACCTGCCCGTCCAGATCCTGTTGATATGGATGAGGATGAATTAGAAATGCTTTCAGAAGCCAGAGCACGGTTAGCCAATACACAGGGT-AAAAAAGCAAAGCGTAAGGCTAGAGAACGTCAACTGGAAATTGCGCGAAGAATGGCTATGATGCAAAAACGTCGAGAACTTCGAGCAGCTGGTCTGGGAACATTCTTAGGATTAGCACCGAAAACGAAACCATGCATGGATTATAATTCCGAAATTCCATTTGAGAAGCAACCTCCTAAAGGATTCTATGATACTAGTAGGGAAAAACCAGAAATCAAACCTATGGACTTTCAACGTTTAAGACTTTCAGACATCGAAAAAGAAAGTTTTATGGAAAGGGAGAAGCGTGAACGTAAAAAGGATGCTGAACGCCAGGCTAAACGTATGCAGTCTGATTTACCTGGACTTATTTTGCAACGTGGGAA] [+] EMBL CD115881 [CTGGCACGTTTCAGAAGACATCGCTACAAGTCGTTCATCATGCCTCGGATTAACATCAAAGGGGGTGTTTGGAGGAACACTGAGGATGAAATTCTCAAAGCTGCTGTTATGAAATATGGCAAGAATCAGTGGGCAAGGATAGCTTCTTTGCTACACCGCAAAGCCGCTAAACAGTGCAAAGCTAGATGGTACGAATGGCTTGATCCCAGTGTCAAGAAAACAGAGTGGAGCCGTGAAGAAGACGAAAAGTTACTACACCTTGCAAAGCTTATGCCAACTCAGTGGCGAACAATCGCTCCGATAGCTGGGAGAACTGCAAACCAATGTTTGGAACGCTATGAATACCTCTTGGACAAAGCACAAAACAGAGAAGGATTATCCGCAGAGGAGGATCCTAAACGCCTTCGCCCTGGAGAAATAGATCCAAATCCGGAGACCAAACCTGCCCGTCCAGATCCTGTTGATATGGATGAAGATGAATTAGAAATGCTTTCAGAAGCCAGAGCACGGTTAGCCAATACACAGGGT AAAAAAGCAAAGCGTAAGGCTAGAGAACGTCAACTGGAAATTGCGCGAAGAATGGCTATGATGCANAAACGTCGAGAACTTCGAGCAGCTGGTCTGGGAACATTCTTANGATT ] [+] EMBL CD138604 [ TTCGCCCTGGAGAAATAGATCCAAATCCGGAGACCAAACCTGCCCGTCCAGATCCTGTTGATATGGATGAGGATGAATTAGAAATGCTTTCAGAAGCCAGAGCACGGTTAGCCAATACACAGGGT AAAAAAGCAAAGCGTAAGGCTAGAGAACGTCAACTGGAAATTGCGCGAAGAATGGCTATGATGCAAAAACGTCGAGAACTTCGAGCAGCTGGTCTGGGGACATTCTTAGGATTAGCACCGAAAACGAAACCATGCATGGATTATAATTCCGAAATTCCATTTGAGAAGCAACCTCCTAAAGGATTCTATGATACTAGTAGGGAAAAACCAGAAATCAAACCTATGGACTTTCAACGTTTAAGACTTTCAGACATCGAAAAAGAAAGTTTTATGGAAAGGGAGAAGCGTGAACGTAAAAAGGATGCTGAACGCCAGGCTAAACGTATGCAGTCTGATTTACCTGGACTTATTTTGCAACGTGGGAA] [+] EMBL CD188485 [ TCCAAATCCGGAGACCAAACCTGCCCGTCCAGATCCTGTTGATATGGATGAGGATGAATTAGAAATGCTTTCAGAAGCCAGAGCACGGTTAGCCAATACACAGGGTAAAAAAAGCAAAGCGTAAGGCTAGAGAACGTCAACTGGAAATTGCGCGAAGAATGGCTATGATGCAAAAACGTCGAGAACTTCGAGCAGCTGGTCTGGGAACATTCTTAGGATTAGCACCGAAAACGAAACCATGCATGGATTATAATTCCGAAATTCCATTTGAGAAGCAACCTCCTAAAGGATTCTATGATACTAGTAGGGAAAAACCAGAAATCAAACCTATGGACTTTCAACGTTTAAGACTTTCAGACATCGAAAAAGAAAGTTTTATGGAAAGGGAGAAGCGTGAACGTAAAAAGG ] consensusID : consensus_6097#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 364 fasta sequence [CTTTTCAGAAGACATCGCTACAAGTCGTTCATCATGCCTCGGATTAACATCAAAGGGGGTGTTTGGAGGAACACTGAGGATGAAATTCTCAAAGCTGCTGTTATGAAATATGGCAAGAATCAGTGGGCAAGGATAGCTTCTTTGCTACACCGCAAAGCCGCTAAACAGTGCAAAGCTAGATGGTACGAATGGCTTGATCCCAGTGTCAAGAAAACAGAGTGGAGCCGTGAAGAAGACGAAAAGTTACTACACCTTGCAAAGCTTATGCCAACTCAGTGGCGAACAATCGCTCCGATAGTTGGGAGAACTGCAAACCAATGTTTGGAACGCTATGAATACCTCTTGTAACTCATAAATTCATTAT] [+] EMBL CD132751 [CTTTTCAGAAGACATCGCTACAAGTCGTTCATCATGCCTCGGATTAACATCAAAGGGGGTGTTTGGAGGAACACTGAGGATGAAATTCTCAAAGCTGCTGTTATGAAATATGGCAAGAATCAGTGGGCAAGGATAGCTTCTTTGCTACACCGCAAAGCCGCTAAACAGTGCAAAGCTAGATGGTACGAATGGCTTGATCCCAGTGTCAAGAAAACAGAGTGGAGCCGTGAAGAAGACGAAAAGTTACTACACCTTGCAAAGCTTATGCCAACTCAGTGGCGAACAATCGCTCCGATAGTTGGGAGAACTGCAAACCAATGTTTGGAACGCTATGAATACCTCTTGTAACTCATAAATTCATTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6097#0 CTGGCACGTTTCAGAAGACATCGCTACAAGTCGTTCATCATGCCTCGGATTAACATCAAA 60 consensus_6097#1 ------CTTTTCAGAAGACATCGCTACAAGTCGTTCATCATGCCTCGGATTAACATCAAA 54 * **************************************************** consensus_6097#0 GGGGGTGTTTGGAGGAACACTGAGGATGAAATTCTCAAAGCTGCTGTTATGAAATATGGC 120 consensus_6097#1 GGGGGTGTTTGGAGGAACACTGAGGATGAAATTCTCAAAGCTGCTGTTATGAAATATGGC 114 ************************************************************ consensus_6097#0 AAGAATCAGTGGGCAAGGATAGCTTCTTTGCTACACCGCAAAGCCGCTAAACAGTGCAAA 180 consensus_6097#1 AAGAATCAGTGGGCAAGGATAGCTTCTTTGCTACACCGCAAAGCCGCTAAACAGTGCAAA 174 ************************************************************ consensus_6097#0 GCTAGATGGTACGAATGGCTTGATCCCAGTGTCAAGAAAACAGAGTGGAGCCGTGAAGAA 240 consensus_6097#1 GCTAGATGGTACGAATGGCTTGATCCCAGTGTCAAGAAAACAGAGTGGAGCCGTGAAGAA 234 ************************************************************ consensus_6097#0 GACGAAAAGTTACTACACCTTGCAAAGCTTATGCCAACTCAGTGGCGAACAATCGCTCCG 300 consensus_6097#1 GACGAAAAGTTACTACACCTTGCAAAGCTTATGCCAACTCAGTGGCGAACAATCGCTCCG 294 ************************************************************ consensus_6097#0 ATAGCTGGGAGAACTGCAAACCAATGTTTGGAACGCTATGAATACCTCTTGGACAAAGCA 360 consensus_6097#1 ATAGTTGGGAGAACTGCAAACCAATGTTTGGAACGCTATGAATACCTCTTG--TAACTCA 352 **** ********************************************** ** ** consensus_6097#0 CAAAACAGAGAAGGATTATCCGCAGAGGAGGATCCTAAACGCCTTCGCCCTGGAGAAATA 420 consensus_6097#1 TAAATTCATTAT------------------------------------------------ 364 *** * consensus_6097#0 GATCCAAATCCGGAGACCAAACCTGCCCGTCCAGATCCTGTTGATATGGATGAGGATGAA 480 consensus_6097#1 ------------------------------------------------------------ consensus_6097#0 TTAGAAATGCTTTCAGAAGCCAGAGCACGGTTAGCCAATACACAGGGTAAAAAAGCAAAG 540 consensus_6097#1 ------------------------------------------------------------ consensus_6097#0 CGTAAGGCTAGAGAACGTCAACTGGAAATTGCGCGAAGAATGGCTATGATGCAAAAACGT 600 consensus_6097#1 ------------------------------------------------------------ consensus_6097#0 CGAGAACTTCGAGCAGCTGGTCTGGGAACATTCTTAGGATTAGCACCGAAAACGAAACCA 660 consensus_6097#1 ------------------------------------------------------------ consensus_6097#0 TGCATGGATTATAATTCCGAAATTCCATTTGAGAAGCAACCTCCTAAAGGATTCTATGAT 720 consensus_6097#1 ------------------------------------------------------------ consensus_6097#0 ACTAGTAGGGAAAAACCAGAAATCAAACCTATGGACTTTCAACGTTTAAGACTTTCAGAC 780 consensus_6097#1 ------------------------------------------------------------ consensus_6097#0 ATCGAAAAAGAAAGTTTTATGGAAAGGGAGAAGCGTGAACGTAAAAAGGATGCTGAACGC 840 consensus_6097#1 ------------------------------------------------------------ consensus_6097#0 CAGGCTAAACGTATGCAGTCTGATTTACCTGGACTTATTTTGCAACGTGGGAA 893 consensus_6097#1 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||