These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6131#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 622 fasta sequence [CTCTCATATCTATTGCAGCAGTTTCAGGCGATGACTTAGTTGGCATCTTGGTAGGGACAGTAACGACCTTGGGAAACTGTAGTGCTGATGATTATAAATTACTTGCATCGAGTTTTCCACTTTCGACAGGAGTCGCATACATACTTAGTTTAGGTGTCACGTCATCATTCAGGTCCAGAGGTGTTGCATCTATTTTATTGAGATCATTTATTGGTTATGTGTCTGGTGAAAATATGGATTGGTTAAACGATTCTAATCATCAAGTTGATTTATCTTGTTCAGATCTATTCAGTCAAACTGTGAATGGGAATCTAGATCACTATAGAAATGGAGAGCATTGTTATTCTGACAGCAATGTATCAACTGAGTGTAGCGATACATCTCCATCTACAATTTGGCGTGTCAAAGATTATAAATCTTTATACAATCTAATTACACAATTACCACATGTCTCTCCTGTACGAGCTGTTTATCTTCATGTATTACATAGTAATCTACATGCAAGACGTTTCTATGAAAATCGTGGTTTTATTTGTCTTCATGTACGTCCTGGTTGTTATACAATTGATGGTAGATCTGCTGATGGTTGTACATATGTTCTTCATACAAATGGTGGACATTT] [+] EMBL AI976769 [CTCTCATATCTATTGCAGCAGTTTCAGGCGATGACTTAGTTGGCATCTTGGTAGGGACAGTAACGACCTTGGGAAACTGTAGTGCTGATGATTATAAATTACTTGCATCGAGTTTTCCACTTTCGACAGGAGTCGCATACATACTTAGTTTAGGTGTCACGTCATCATTCAGGTCCAGAGGTGTTGCATCTATTTTATTGAGATCATTTATTGGTTATGTGTCTGGTGAAAATATGGATTGGTTAAACGATTCTAATCATCAAGTTGATTTATCTTGTTCAGATCTATTCAGTCAAACTGTGAATGGGAATCTAGATCACTATAGAAATGGAGAGCATTGTTATTCTGACAGCAATGTATCAACTGAGTGTAGCGATACATCTCCATCTACAATTTGGCGTGTCAAAGATTATAAATCTTTATACAATCTAATTACACAATTACCACATGTCTCTCCTGTACGAGCTGTTTATCTTCATGTATTACATAGTAATCTACATGCAAGACGTTTCTATGAAAATCGTGGTTTTATTTGTCTTCATGTACGTCCTGGTTGTTATACAATTGATGGTAGATCTGCTGATGGTTGTACATATGTTCTTCATACAAATGGTGGACATTT] [+] EMBL AI977356 [CTCTCATATCTATTGCAGCAGTTTCAGGCGATGACTTAGTTGGCATCTTGGTAGGGACAGTAACGACCTTGGGAAACTGTAGTGCTGATGATTATAAATTACTTGCATCGAGTTTTCCACTTTCGACAGGAGTCGCATACATACTTAGTTTAGGTGTCACGTCATCATTCAGGTCCAGAGGTGTTGCATCTATTTTATTGAGATCATTTATTGGTTATGTGTCTGGTGAAAATATGGATTGGTTAAACGATTCTAATCATCAAGTTGATTTATCTTGTTCAGATCTATTCAGTCAAACTGTGAATGGGAATCTAGATCACTATAGAAATGGAGAGCATTGTTATTCTGACAGCAATGTATCAACTGAGTGTAGCGATACATCTCCATCTACAATTTGGCGTGTCAAAGATTATAAATCTTTATACAATCTAATTACACAATTACCACATGTCTCTCCTGTACGAGCTGTTTATCTTCATGTATTACATAGTAATCTACATGCCAGACGTTTCT ] [+] EMBL AI976766 [CTCTCATATCTATTGCAGCAGTTTCAGGCGATGACTTAGTTGGCATCTTGGTAGGGACAGTAACGACCTTGGGAAACTGTAGTGCTGATGATTATAAATTACTTGCATCGAGTTTTCCACTTTCGACAGGAGTCGCATACATACTTAGTTTAGGTGTCACGTCATCATTCAGGTCCAGAGGTGTTGCATCTATTTTATTGAGATCATTTATTGGTTATGTGTCTGGTGAAAATATGGATTGGTTAAACGATTCTAATCATCAAGTTGATTTATCTTGTTCAGATCTATTCAGTCAAACTGTGAATGGGAATCTAGATCACTATATAAATGGAGAGCATTGTTATTCTGACAGCAATGTATCAACTGAGTGTAGCGATACATCTCCATCTACAATTTGGCGTGTCAAAGATTATAAATCTTTATACAATCTAATTACACAATTACCACATGTCTCTCCTGTACGAGCTGTTTATCTTCATGTATTACAT ] consensusID : consensus_6131#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 250 fasta sequence [GTTGCATCTATTTTATTGAGATCATTTATTGGTTATGTGTCTGGTGAAAATATGGATTGGTTAAACGATTCTAATCATCAAGTTGATTTATCTTGTTCAGATCTATTCAGTCAAACTGTGAATGGGAATCTAGATCACTATAGAAATGGAGAGCATTGTTATTCTGACAGCAATTCTCATCGTGAATACTACTCACCAGTAGTACGTAGCGGAAAGGCGTGTAGAAGTTGCTACAGTCGACAACTGAAGA] [-] EMBL CD159828 [GTTGCATCTATTTTATTGAGATCATTTATTGGTTATGTGTCTGGTGAAAATATGGATTGGTTAAACGATTCTAATCATCAAGTTGATTTATCTTGTTCAGATCTATTCAGTCAAACTGTGAATGGGAATCTAGATCACTATAGAAATGGAGAGCATTGTTATTCTGACAGCAATTCTCATCGTGAATACTACTCACCAGTAGTACGTAGCGGAAAGGCGTGTAGAAGTTGCTACAGTCGACAACTGAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6131#0 CTCTCATATCTATTGCAGCAGTTTCAGGCGATGACTTAGTTGGCATCTTGGTAGGGACAG 60 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 TAACGACCTTGGGAAACTGTAGTGCTGATGATTATAAATTACTTGCATCGAGTTTTCCAC 120 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 TTTCGACAGGAGTCGCATACATACTTAGTTTAGGTGTCACGTCATCATTCAGGTCCAGAG 180 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 GTGTTGCATCTATTTTATTGAGATCATTTATTGGTTATGTGTCTGGTGAAAATATGGATT 240 consensus_6131#1 --GTTGCATCTATTTTATTGAGATCATTTATTGGTTATGTGTCTGGTGAAAATATGGATT 58 ********************************************************** consensus_6131#0 GGTTAAACGATTCTAATCATCAAGTTGATTTATCTTGTTCAGATCTATTCAGTCAAACTG 300 consensus_6131#1 GGTTAAACGATTCTAATCATCAAGTTGATTTATCTTGTTCAGATCTATTCAGTCAAACTG 118 ************************************************************ consensus_6131#0 TGAATGGGAATCTAGATCACTATAGAAATGGAGAGCATTGTTATTCTGACAGCAATGTAT 360 consensus_6131#1 TGAATGGGAATCTAGATCACTATAGAAATGGAGAGCATTGTTATTCTGACAGCAAT-TCT 177 ******************************************************** * * consensus_6131#0 CAACTGAGTGTAGCGATACATCTCCATCTACAATTTGGCGTGTCAAAGATTATAAATCTT 420 consensus_6131#1 CATC---GTG----AATACTACTC-ACCAGTAGTACGTAGCGGAAAGGCGTGTAGAAGTT 229 ** * *** **** *** * * * * * * * ** * * ** * ** consensus_6131#0 TATACAATC--TAATTACACAATTACCACATGTCTCTCCTGTACGAGCTGTTTATCTTCA 478 consensus_6131#1 GCTACAGTCGACAACTGAAGA--------------------------------------- 250 **** ** ** * * * consensus_6131#0 TGTATTACATAGTAATCTACATGCAAGACGTTTCTATGAAAATCGTGGTTTTATTTGTCT 538 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 TCATGTACGTCCTGGTTGTTATACAATTGATGGTAGATCTGCTGATGGTTGTACATATGT 598 consensus_6131#1 ------------------------------------------------------------ consensus_6131#0 TCTTCATACAAATGGTGGACATTT 622 consensus_6131#1 ------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||