These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_62#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence [GTAGGTATAAAAAGCTCGATCGAACAGTGGCTTTTCACATAGCCTCGTGTTTAGGAATGAGAAAAGGAATTGATAATAAAAAGATCTCAATTTTCGCAACTATCTCAACCAGCATTAGGTTAACTCTTCACAAAAGTAGGGAAATCAAGTGGAACACCTAAGAAGTTAGTTTATCTAGTCTATTTTACCTATCTAGCTATATATTCGAACACATAAACATTGGTGTCAGTCAGCTACAACGTAGGACCAGGCACACATATGCATCAGTCCAAGTTGCCATACCTCGTTCGCACAATAAGATGAATACCGGATTCATAGAAATAGTTAATTTAGTGGTGGTAGTATATAAAACATAGGTTGTATATAGGGATATAGTATGGGAAGGAAGAACGTTATGAAGCAATTTTAAACTTAAGGTTTGAGGGAAGATAGA] [+] EMBL CD128029 [GTAGGTATAAAAAGCTCGATCGAACAGTGGCTTTTCACATAGCCTCGTGTTTAGGAATGAGAAAAGGAATTGATAATAAAAAGATCTCAATTTTCGCAACTATCTCAACCAGCATTAGGTTAACTCTTCACAAAAGTAGGGAAATCAAGTGGAACACCTAAGAAGTTAGTTTATCTAGTCTATTTTACCTATCTAGCTATATATTCGAACACATAAACATTGGTGTCAGTCAGCTACAACGTAGGACCAGGCACACATATGCATCAGTCCAAGTTGCCATACCTCGTTCGCACAATAAGATGAATACCGGATTCATAGAAATAGTTAATTTAGTGGTGGTAGTATATAAAACATAGGTTGTATATAGGGATATAGTATGGGAAGGAAGAACGTTATGAAGCAATTTTAAACTTAAGGTTTGAGGGAAGATAGA] consensusID : consensus_62#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 364 fasta sequence [ATAGGTAGGTATGACAGTTGAGTCTTATAATCTGTTTTGAGTCATGATCCTTAGTATACTTATTTGATGCATTCTATGAAATATAGATATAAAGAAACTTGTGACTTTCCTCATTATCTTCTGTATTATACTGATTTCTTAAGATTCAATTGATATAGCTTAAAGAGTTATCTTTACTAGTCTGAGCCATGTTGGCAGATGCAGACTACTTGGTTGGGGTCCACGTGACTATCGTAACCAATGGTTGGAGACTCTAGGTGACATGGCTCATAATCGATCATAATTGCGCAGGTGTATACACTCTTTGTCTTCCCTTAAACCTTGAGATTAAAATTGCTTCATAACTTTCTTCCTATACTATATC] [+] EMBL CD127270 [ATAGGTAGGTATGACAGTTGAGTCTTATAATCTGTTTTGAGTCATGATCCTTAGTATACTTATTTGATGCATTCTATGAAATATAGATATAAAGAAACTTGTGACTTTCCTCATTATCTTCTGTATTATACTGATTTCTTAAGATTCAATTGATATAGCTTAAAGAGTTATCTTTACTAGTCTGAGCCATGTTGGCAGATGCAGACTACTTGGTTGGGGTCCACGTGACTATCGTAACCAATGGTTGGAGACTCTAGGTGACATGGCTCATAATCGATCATAATTGCGCAGGTGTATACACTCTTTGTCTTCCCTTAAACCTTGAGATTAAAATTGCTTCATAACTTTCTTCCTATACTATATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_62#0 ----GTAGGTATAAAAAGCTCGATCGAACAGTGGCTTTTCA--CATAGCCTCGTGTTTAG 54 consensus_62#1 ATAGGTAGGTATGACA-GTTGAGTCTTATAATCTGTTTTGAGTCATGATCCTTAGTATAC 59 ******** * * * * ** * * * **** * *** * ** ** consensus_62#0 GAATGAGAAAAGGAATTGATAATAAAAAGATCTCAATTTTCGCAACTATCTCAACCAGCA 114 consensus_62#1 TTATTTGATGCATTCTATGAAATATAGATATAAAGAAACTTGTGACTTTCCTCATTATCT 119 ** ** * **** * * ** * * * *** ** * * * consensus_62#0 TTAGGTTAACTCTTCACAAAAGTAGGGAAATCAAGTGGAACA-CCTAAGAAGTTAGTTTA 173 consensus_62#1 TCTGTATTATACT----GATTTCTTAAGATTCAATTGATATAGCTTAAAGAGTTATCTTT 175 * * * * ** * * **** ** * * * *** ***** ** consensus_62#0 TCTAGTCTATTTTACCTATCTAGCTATATATTCGAACACATAAACATTGGTGTCAGTCAG 233 consensus_62#1 ACTAGTCTGAGCCATGTTGGCAGATGCAGACT--ACTTGGTTGGGGTCCACGT--GACTA 231 ******* * * ** * * * * * * * ** * * consensus_62#0 CTACAACGTAGGACCAGGCACACATATGCATCAGTCCAAGTTGCCATACCTCGTTCGCAC 293 consensus_62#1 TCGTAACCAATGGTTGGAGACTC-TAGGTGACATGGCTCATAATCG-ATCATAATTGCGC 289 *** * * * ** * ** * ** * * * * * * ** * consensus_62#0 AATAAGATGAATACCGGATTCATAGAAATAGTTAATTTAGTGGTGGTAGTATATAAAACA 353 consensus_62#1 ----AGGTGTATAC---ACTCTTTGTCTTCCCTTAAACCTTGAGATTAAAAT-TGCTTCA 341 ** ** **** * ** * * * * * ** ** ** * ** consensus_62#0 TAGGTTGTATATAGGGATATAGTATGGGAAGGAAGAACGTTATGAAGCAATTTTAAACTT 413 consensus_62#1 TAACTTTCTTCCTATACTATATC------------------------------------- 364 ** ** * **** consensus_62#0 AAGGTTTGAGGGAAGATAGA 433 consensus_62#1 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||