These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [ATGTAATCAAACCAATATACTGTTTTTTCAAATTCTATATTCCCGAAGTTAATCAATGAGTGAGCACCCCTGTGTGTATTTTATTCACAGTGAAAAACATTTTTTTGGTTAGACCAAAAAAAGCATTTTGGTAGATGATTTGTATTTAGTGATGACAAATTTAACTGTCAGGAGCTAAAGAGTACTAAAGTGACAATATTTTCGTCTAAATCCTACTTTCGGCGTCGTATATCATCAATTCCATAAGATTATCTAGGTGATTAGTGAATTGTTAACAGATGGATTTTATAAAATTTGTTTGGAAACACTGTGAGTTGGAACCAACTAGTAGAACGAGACAACGAGCAAATTACGCCATTAATTGACTGAAGCTGAAAACTATGCATTCACTGACTAAATGGTACTGTAGACCACATCTTATGAGGTTTTGGCTAAGGACCTGTACTANATGAAGGAATTGGAAATTGGAAATAAATATTTATTTCGATNCAGGATCGAAATCTTTGTCCAGACG] [+] EMBL CD149073 [ATGTAATCAAACCAATATACTGTTTTTTCAAATTCTATATTCCCGAAGTTAATCAATGAGTGAGCACCCCTGTGTGTATTTTATTCACAGTGAAAAACATTTTTTTGGTTAGACCAAAAAAAGCATTTTGGTAGATGATTTGTATTTAGTGATGACAAATTTAACTGTCAGGAGCTAAAGAGTACTAAAGTGACAATATTTTCGTCTAAATCCTACTTTCGGCGTCGTATATCATCAATTCCATAAGATTATCTAGGTGATTAGTGAATTGTTAACAGATGGATTTTATAAAATTTGTTTGGAAACACTGTGAGTTGGAACCAACTAGTAGAACGAGACAACGAGCAAATTACGCCATTAATTGACTGAAGCTGAAAACTATGCATTCACTGACTAAATGGTACTGTAGACCACATCTTATGAGGTTTTGGCTAAGGACCTGTACTANATGAAGGAATTGGAAATTGGAAATAAATATTTATTTCGATNCAGGATCGAAATCTTTGTCCAGACG] consensusID : consensus_6210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 325 fasta sequence [CCTGAACCTCAGTGATCCCCAATGTTCTTTCACTGTGTTCCGTAGTTGTTGAACTATTCAAATCGTTGACATCCGACTTCTTCTAAATGATATAATTAGAAGAATTGATTACTAAACATCAAATATCATTCTTTTAATTCATCGTTCTCAGTAATGATGACACAAGAGATTCTCATACATAGTTGCTGAATTCCAATTCGTCAAATCATTCAGGATATCTATCAGCGATTTGACAATCAGTGTGCTCAGTAAACACGATCCTACACCTAGTTGACGACCCCTTTGTGTGATGGAATATATGTTCTGGATGTCACAATCGCAATCC] [+] EMBL CD117208 [CCTGAACCTCAGTGATCCCCAATGTTCTTTCACTGTGTTCCGTAGTTGTTGAACTATTCAAATCGTTGACATCCGACTTCTTCTAAATGATATAATTAGAAGAATTGATTACTAAACATCAAATATCATTCTTTTAATTCATCGTTCTCAGTAATGATGACACAAGAGATTCTCATACATAGTTGCTGAATTCCAATTCGTCAAATCATTCAGGATATCTATCAGCGATTTGACAATCAGTGTGCTCAGTAAACACGATCCTACACCTAGTTGACGACCCCTTTGTGTGATGGAATATATGTTCTGGATGTCACAATCGCAATCC] [+] EMBL CD117222 [CCTGAACCTCAGTGATCCCCAATGTTCTTTCACTGTGTTCCGTAGTTGTTGAACTATTCAAATCGTTGACATCCGACTTCTTCTAAATGATATAATTAGAAGAATTGATTACTAAACATCAAATATCATTCTTTTAATTCATCGTTCTCAGTAATGATGACACAAGAGATTCTCATACATAGTTGCTGAATTCCAATTCGTCAAATCATTCAGGATATCTATCAGCGATTTGACAATCAGTGTGCTCAGTAAACACGATCCTACACCTAGTTGACGACCCCTTTGTGTGATGGAATATATGTTCTGGATGTCACAATCGCAATCC] consensusID : consensus_6210#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 265 fasta sequence [CTCATGTCTGTCTCCATTTCTCAGTGTAATGTGTTCTGTCAATCTTCCTCTTCTCCTTCGAGCCTTCAGGATTCCATGTGAGGGCTTGTCTGTGTGACTCATGTTGGGTGATTTCCGTCAATGTGTGTTCTATCCACTTCCAGCGCTTCTCCCTGATTTCTCTCTCCGCATGGAATCTGGTTTGTTGTCTCCTACAGTGGGTTGCTGCTGATAGTGTCTGGCCATCGGATCCGAAGTATCTTGCGTAGACAACTGTTAATAAACA] [+] EMBL CD166865 [CTCATGTCTGTCTCCATTTCTCAGTGTAATGTGTTCTGTCAATCTTCCTCTTCTCCTTCGAGCCTTCAGGATTCCATGTGAGGGCTTGTCTGTGTGACTCATGTTGGGTGATTTCCGTCAATGTGTGTTCTATCCACTTCCAGCGCTTCTCCCTGATTTCTCTCTCCGCATGGAATCTGGTTTGTTGTCTCCTACAGTGGGTTGCTGCTGATAGTGTCTGGCCATCGGATCCGAAGTATCTTGCGTAGACAACTGTTAATAAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6210#0 ATGTAATCAAACCAATATACTGTTTTTTCAAATTCTATATTCCCGAAGTTAATCAATGAG 60 consensus_6210#1 -----------------------------------------CCTGAACCTCAGTGAT--- 16 consensus_6210#2 ------------------------------------------------CTCATGTCTGTC 12 * * * consensus_6210#0 TGAGCACCCCTGTGTGTATTTTATTCACAGTGAAAAACATTTTTTTGGTTAGACCAAAAA 120 consensus_6210#1 ------CCCCAATGT-----TCTTTCACTGTGTTCCGTAGTT-----GTTGAACTATTCA 60 consensus_6210#2 TCCATTTCTCAGTGTAATGTGTTCTGTCAATCTTCCTCTTCTCCT---TCGAGCCTTCAG 69 * * *** * * * * * * consensus_6210#0 AAGCATTT-TGGTAGATGATTTGTATTTAGTGATGACAAATTTAACTGTCAGGAGCTAAA 179 consensus_6210#1 AATCGT---TGACATCCGACTTCTTCTAAATGATA-------TAATTAGAAGAATT---- 106 consensus_6210#2 GATTCCATGTGAGGGCTTGTCTGTG-TGACTCATGTTGGG--TGATTTCCGTCAATGTGT 126 * ** * * * * * ** * * * * consensus_6210#0 GAGTACTAAAGTGACAATATTTTCGTCTAAATCCTACTTTCGGCGTCGTATATCATCAAT 239 consensus_6210#1 GATTACTAAACATCAAATATCATTCTTTTAATTCATCGTTC----TCAGTAATGATGA-- 160 consensus_6210#2 GTTCTATCCACTTCCAGCGCTTCTCCCTGATTTCTCTCTCCG----CATGGAATCTGGTT 182 * * * * * * * * * * * * * consensus_6210#0 TCCATAAGATTATC-TAGGTGATTAGTGA--ATTGTTAACAGATGGATTTTATAAAATTT 296 consensus_6210#1 CACAAGAGATTCTCATACATAGTTGCTGA--ATTCCAATTCGTCAAATCATTCAGGATAT 218 consensus_6210#2 TGTTGTCTCCTACAGTGGGTTGCTGCTGATAGTGTCTGGCCATCGGATC-CGAAGTATCT 241 * * * * *** * ** * ** * consensus_6210#0 GTTTGGAAACACTGTGAGTTGGAACCAACTAGTAGA-ACGAGACAACGAGCAAATTACGC 355 consensus_6210#1 CTATCAGCGATTTGACAATCAGTGT-GCTCAGTAAACACGATCCTACACCTAGTTGACGA 277 consensus_6210#2 TGCGTAGACAACTGTTAATAAACA------------------------------------ 265 ** * * consensus_6210#0 CATTAATTGACTGAAGCTGAAAACTATGCATTCACTGACTAAATGGTACTGTAGACCACA 415 consensus_6210#1 C-CCCTTTGTGTGA---TGGAATATATGTTCTGGATGTCACAATCGCAATCC-------- 325 consensus_6210#2 ------------------------------------------------------------ consensus_6210#0 TCTTATGAGGTTTTGGCTAAGGACCTGTACTANATGAAGGAATTGGAAATTGGAAATAAA 475 consensus_6210#1 ------------------------------------------------------------ consensus_6210#2 ------------------------------------------------------------ consensus_6210#0 TATTTATTTCGATNCAGGATCGAAATCTTTGTCCAGACG 514 consensus_6210#1 --------------------------------------- consensus_6210#2 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||