Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6213 cluster # 6213       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6213#0 length = 556 sequences # 3  
consensus_6213#1 length = 504 sequences # 1  

consensusID : consensus_6213#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 556
fasta sequence
                              [ATCGAGAATGACAGACACCAAACCAATGATGACATACAAAAAGGATTTTATAAGATTTTCCCTGAGGATTCCCTTCGTGTTTTGAAACGTTTTTTGTTTGTTGGGCGGTTCACGACTTTTTGTTGGTGTTAACGATGGAAACCAAGCCAAATCAGCGTAGGGATCATTTATTCCTGGTCGATCTGGATGTATAGAACGTCGACGGTAACTCGGAAGTCGAGAAACACATTCTAGTATGGGAGATGAGTGGTTTTGTACTGGTAGCCCATTCATAAAACTTGCAGATAGTTCTTTAGTAGACACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAATTACAGTCTGTATTGGTCTATCTTCTGTTACGGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATTCGATATGCATTTTTTCAGCTTAGCGATCAAGGTTGCTCGAGTCGAATCTGTCACTGGAGGAACAACATCTAGATATCTAGACAAAGCTGATCGCAGTTCATCATCG]

[-] EMBL CD178521             [ATCGAGAATGACAGACACCAAACCAATGATGACATACAAAAAGGATTTTATAAGATTTTCCCTGAGGATTCCCTTCGTGTTTTGAAACGTTTTTTGTTTGTTGGGCGGTTCACGACTTTTTGTTGGTGTTAACGATGGAAACCAAGCCAAATCAGCGTAGGGATCATTTATTCCTGGTCGATCTGGATGTATAGAACGTCGACGGTAACTCGGAAGTCGAGAAACACATTCTAGTATGGGAGATGAGTGGTTTTGTACTGGTAGCCCATTCATAAAACTTGCAGATAGTTCTTTAGTAGACACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAATTACAGTCTGTATTGGTCTATCTTCTGTTACGGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATTCGATAg                                                                                                    ]
[+] EMBL CD161353             [                                                                                                                                      ATGGAAACCAAGCCAAATCAGCGTAGGAATCATTTATTCCTGGTCGATCTGGATGTATAGAACGTCGACGGTAACTCGGAAGTCGAGAAACACATTCTAGTATGGGAGATGAGTGGTTTTGTACTGGTAGCCCATTCATAAAACCTGCAGATAGTTCTTTAGTAGACACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAATTACAGTCTGTATTGGTCTATCTTCTGTTACGGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATTCGATATGCATTTTTTCAGCTTAGCGATCAAGGTTGCTCGAGTCGAATCTGTCACTGGAGGAACAACATCTAGATATCTAGACAAAGCTGATCGCAGTTCATCATCG]
[+] EMBL CD161021             [                                                                                                                                      ATGGAAACCAAGCCAAATCAGCGTAGGGATCATTTATTCCTGGTCGATCTGGATGTATAGAACGTCGACGGTAACTCGGAAGTCGAGAAACACATTCTAGTATGGGAGATGAGTGGTTTTGTACTGGTAGCCCATTCATAAAACTTGCAGATAGTTCTTTAGTAGACACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAATTACAGTCTGTATTGGTCTATCTTCTGTTACGGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATTCGATATGCATTTTTTCAGCTTAGCGATCAAGGTTGCTCGAGTCGAATCTGTCACTGGAGGAACAACATCTAGATATCTAGACAAAGCTGATCGCAGTTCATCATCG]


>consensus_6213#0 ATCGAGAATGACAGACACCAAACCAATGATGACATACAAAAAGGATTTTATAAGATTTTC CCTGAGGATTCCCTTCGTGTTTTGAAACGTTTTTTGTTTGTTGGGCGGTTCACGACTTTT TGTTGGTGTTAACGATGGAAACCAAGCCAAATCAGCGTAGGGATCATTTATTCCTGGTCG ATCTGGATGTATAGAACGTCGACGGTAACTCGGAAGTCGAGAAACACATTCTAGTATGGG AGATGAGTGGTTTTGTACTGGTAGCCCATTCATAAAACTTGCAGATAGTTCTTTAGTAGA CACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAAT TACAGTCTGTATTGGTCTATCTTCTGTTACGGTGGCAGGATTACCTACGACGTTTTGTGG AGAATCCTTTAATAAACTCTCAGAACCATTCGATATGCATTTTTTCAGCTTAGCGATCAA GGTTGCTCGAGTCGAATCTGTCACTGGAGGAACAACATCTAGATATCTAGACAAAGCTGA TCGCAGTTCATCATCG



consensusID : consensus_6213#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 504
fasta sequence
                              [TCGTGGATGTATAGAACGTCGACGGTAATTCGGAAGTCGAGAAACACATTCTAGTATGGGAGATGAGTGGTTTTGTACTGGCAGCCCATTCATAAAACTTGCAGATAGTTCTTTAGTAGACACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAATTACAGTCTGTATTGGTCTACAGAAGTAAGCTTTCACACTTAGTTACCTATCTTCTGTTACGGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATTCGATATGCATTTTTTCAGCTTAGCGATCAAGGTTGCTCGAGTCGAATCTAGTTTTTACACTGATTTAAGCCAAAGATTTACCTGTCACTGGAGGAACAACATCTAGATATCTAGACAAAGCTGATCGCAGTTCATCATCGCTGATAGTTTCCATCCCAGCGCTGATGAGCAACAGCAATCACCCACTCAACCTTTCAGTTTTGA]

[+] EMBL CD188772             [TCGTGGATGTATAGAACGTCGACGGTAATTCGGAAGTCGAGAAACACATTCTAGTATGGGAGATGAGTGGTTTTGTACTGGCAGCCCATTCATAAAACTTGCAGATAGTTCTTTAGTAGACACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAATTACAGTCTGTATTGGTCTACAGAAGTAAGCTTTCACACTTAGTTACCTATCTTCTGTTACGGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATTCGATATGCATTTTTTCAGCTTAGCGATCAAGGTTGCTCGAGTCGAATCTAGTTTTTACACTGATTTAAGCCAAAGATTTACCTGTCACTGGAGGAACAACATCTAGATATCTAGACAAAGCTGATCGCAGTTCATCATCGCTGATAGTTTCCATCCCAGCGCTGATGAGCAACAGCAATCACCCACTCAACCTTTCAGTTTTGA]


>consensus_6213#1 TCGTGGATGTATAGAACGTCGACGGTAATTCGGAAGTCGAGAAACACATTCTAGTATGGG AGATGAGTGGTTTTGTACTGGCAGCCCATTCATAAAACTTGCAGATAGTTCTTTAGTAGA CACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAAT TACAGTCTGTATTGGTCTACAGAAGTAAGCTTTCACACTTAGTTACCTATCTTCTGTTAC GGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATT CGATATGCATTTTTTCAGCTTAGCGATCAAGGTTGCTCGAGTCGAATCTAGTTTTTACAC TGATTTAAGCCAAAGATTTACCTGTCACTGGAGGAACAACATCTAGATATCTAGACAAAG CTGATCGCAGTTCATCATCGCTGATAGTTTCCATCCCAGCGCTGATGAGCAACAGCAATC ACCCACTCAACCTTTCAGTTTTGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6213#0      ATCGAGAATGACAGACACCAAACCAATGATGACATACAAAAAGGATTTTATAAGATTTTC 60
consensus_6213#1      ------------------------------------------------------------
                                                                                  

consensus_6213#0      CCTGAGGATTCCCTTCGTGTTTTGAAACGTTTTTTGTTTGTTGGGCGGTTCACGACTTTT 120
consensus_6213#1      ------------------------------------------------------------
                                                                                  

consensus_6213#0      TGTTGGTGTTAACGATGGAAACCAAGCCAAATCAGCGTAGGGATCATTTATTCCTGGTCG 180
consensus_6213#1      ------------------------------------------------------------
                                                                                  

consensus_6213#0      ATCTGGATGTATAGAACGTCGACGGTAACTCGGAAGTCGAGAAACACATTCTAGTATGGG 240
consensus_6213#1      TCGTGGATGTATAGAACGTCGACGGTAATTCGGAAGTCGAGAAACACATTCTAGTATGGG 60
                         ************************* *******************************

consensus_6213#0      AGATGAGTGGTTTTGTACTGGTAGCCCATTCATAAAACTTGCAGATAGTTCTTTAGTAGA 300
consensus_6213#1      AGATGAGTGGTTTTGTACTGGCAGCCCATTCATAAAACTTGCAGATAGTTCTTTAGTAGA 120
                      ********************* **************************************

consensus_6213#0      CACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAAT 360
consensus_6213#1      CACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAAT 180
                      ************************************************************

consensus_6213#0      TACAGTCTGTATTGGTCTA------------------------------TCTTCTGTTAC 390
consensus_6213#1      TACAGTCTGTATTGGTCTACAGAAGTAAGCTTTCACACTTAGTTACCTATCTTCTGTTAC 240
                      *******************                              ***********

consensus_6213#0      GGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATT 450
consensus_6213#1      GGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATT 300
                      ************************************************************

consensus_6213#0      CGATATGCATTTTTTCAGCTTAGCGATCAAGGTTGCTCGAGTCGAATCT----------- 499
consensus_6213#1      CGATATGCATTTTTTCAGCTTAGCGATCAAGGTTGCTCGAGTCGAATCTAGTTTTTACAC 360
                      *************************************************           

consensus_6213#0      -----------------------GTCACTGGAGGAACAACATCTAGATATCTAGACAAAG 536
consensus_6213#1      TGATTTAAGCCAAAGATTTACCTGTCACTGGAGGAACAACATCTAGATATCTAGACAAAG 420
                                             *************************************

consensus_6213#0      CTGATCGCAGTTCATCATCG---------------------------------------- 556
consensus_6213#1      CTGATCGCAGTTCATCATCGCTGATAGTTTCCATCCCAGCGCTGATGAGCAACAGCAATC 480
                      ********************                                        

consensus_6213#0      ------------------------
consensus_6213#1      ACCCACTCAACCTTTCAGTTTTGA 504
                                              




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)