These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6213#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 556 fasta sequence [ATCGAGAATGACAGACACCAAACCAATGATGACATACAAAAAGGATTTTATAAGATTTTCCCTGAGGATTCCCTTCGTGTTTTGAAACGTTTTTTGTTTGTTGGGCGGTTCACGACTTTTTGTTGGTGTTAACGATGGAAACCAAGCCAAATCAGCGTAGGGATCATTTATTCCTGGTCGATCTGGATGTATAGAACGTCGACGGTAACTCGGAAGTCGAGAAACACATTCTAGTATGGGAGATGAGTGGTTTTGTACTGGTAGCCCATTCATAAAACTTGCAGATAGTTCTTTAGTAGACACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAATTACAGTCTGTATTGGTCTATCTTCTGTTACGGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATTCGATATGCATTTTTTCAGCTTAGCGATCAAGGTTGCTCGAGTCGAATCTGTCACTGGAGGAACAACATCTAGATATCTAGACAAAGCTGATCGCAGTTCATCATCG] [-] EMBL CD178521 [ATCGAGAATGACAGACACCAAACCAATGATGACATACAAAAAGGATTTTATAAGATTTTCCCTGAGGATTCCCTTCGTGTTTTGAAACGTTTTTTGTTTGTTGGGCGGTTCACGACTTTTTGTTGGTGTTAACGATGGAAACCAAGCCAAATCAGCGTAGGGATCATTTATTCCTGGTCGATCTGGATGTATAGAACGTCGACGGTAACTCGGAAGTCGAGAAACACATTCTAGTATGGGAGATGAGTGGTTTTGTACTGGTAGCCCATTCATAAAACTTGCAGATAGTTCTTTAGTAGACACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAATTACAGTCTGTATTGGTCTATCTTCTGTTACGGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATTCGATAg ] [+] EMBL CD161353 [ ATGGAAACCAAGCCAAATCAGCGTAGGAATCATTTATTCCTGGTCGATCTGGATGTATAGAACGTCGACGGTAACTCGGAAGTCGAGAAACACATTCTAGTATGGGAGATGAGTGGTTTTGTACTGGTAGCCCATTCATAAAACCTGCAGATAGTTCTTTAGTAGACACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAATTACAGTCTGTATTGGTCTATCTTCTGTTACGGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATTCGATATGCATTTTTTCAGCTTAGCGATCAAGGTTGCTCGAGTCGAATCTGTCACTGGAGGAACAACATCTAGATATCTAGACAAAGCTGATCGCAGTTCATCATCG] [+] EMBL CD161021 [ ATGGAAACCAAGCCAAATCAGCGTAGGGATCATTTATTCCTGGTCGATCTGGATGTATAGAACGTCGACGGTAACTCGGAAGTCGAGAAACACATTCTAGTATGGGAGATGAGTGGTTTTGTACTGGTAGCCCATTCATAAAACTTGCAGATAGTTCTTTAGTAGACACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAATTACAGTCTGTATTGGTCTATCTTCTGTTACGGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATTCGATATGCATTTTTTCAGCTTAGCGATCAAGGTTGCTCGAGTCGAATCTGTCACTGGAGGAACAACATCTAGATATCTAGACAAAGCTGATCGCAGTTCATCATCG] consensusID : consensus_6213#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [TCGTGGATGTATAGAACGTCGACGGTAATTCGGAAGTCGAGAAACACATTCTAGTATGGGAGATGAGTGGTTTTGTACTGGCAGCCCATTCATAAAACTTGCAGATAGTTCTTTAGTAGACACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAATTACAGTCTGTATTGGTCTACAGAAGTAAGCTTTCACACTTAGTTACCTATCTTCTGTTACGGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATTCGATATGCATTTTTTCAGCTTAGCGATCAAGGTTGCTCGAGTCGAATCTAGTTTTTACACTGATTTAAGCCAAAGATTTACCTGTCACTGGAGGAACAACATCTAGATATCTAGACAAAGCTGATCGCAGTTCATCATCGCTGATAGTTTCCATCCCAGCGCTGATGAGCAACAGCAATCACCCACTCAACCTTTCAGTTTTGA] [+] EMBL CD188772 [TCGTGGATGTATAGAACGTCGACGGTAATTCGGAAGTCGAGAAACACATTCTAGTATGGGAGATGAGTGGTTTTGTACTGGCAGCCCATTCATAAAACTTGCAGATAGTTCTTTAGTAGACACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAATTACAGTCTGTATTGGTCTACAGAAGTAAGCTTTCACACTTAGTTACCTATCTTCTGTTACGGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATTCGATATGCATTTTTTCAGCTTAGCGATCAAGGTTGCTCGAGTCGAATCTAGTTTTTACACTGATTTAAGCCAAAGATTTACCTGTCACTGGAGGAACAACATCTAGATATCTAGACAAAGCTGATCGCAGTTCATCATCGCTGATAGTTTCCATCCCAGCGCTGATGAGCAACAGCAATCACCCACTCAACCTTTCAGTTTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6213#0 ATCGAGAATGACAGACACCAAACCAATGATGACATACAAAAAGGATTTTATAAGATTTTC 60 consensus_6213#1 ------------------------------------------------------------ consensus_6213#0 CCTGAGGATTCCCTTCGTGTTTTGAAACGTTTTTTGTTTGTTGGGCGGTTCACGACTTTT 120 consensus_6213#1 ------------------------------------------------------------ consensus_6213#0 TGTTGGTGTTAACGATGGAAACCAAGCCAAATCAGCGTAGGGATCATTTATTCCTGGTCG 180 consensus_6213#1 ------------------------------------------------------------ consensus_6213#0 ATCTGGATGTATAGAACGTCGACGGTAACTCGGAAGTCGAGAAACACATTCTAGTATGGG 240 consensus_6213#1 TCGTGGATGTATAGAACGTCGACGGTAATTCGGAAGTCGAGAAACACATTCTAGTATGGG 60 ************************* ******************************* consensus_6213#0 AGATGAGTGGTTTTGTACTGGTAGCCCATTCATAAAACTTGCAGATAGTTCTTTAGTAGA 300 consensus_6213#1 AGATGAGTGGTTTTGTACTGGCAGCCCATTCATAAAACTTGCAGATAGTTCTTTAGTAGA 120 ********************* ************************************** consensus_6213#0 CACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAAT 360 consensus_6213#1 CACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAAT 180 ************************************************************ consensus_6213#0 TACAGTCTGTATTGGTCTA------------------------------TCTTCTGTTAC 390 consensus_6213#1 TACAGTCTGTATTGGTCTACAGAAGTAAGCTTTCACACTTAGTTACCTATCTTCTGTTAC 240 ******************* *********** consensus_6213#0 GGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATT 450 consensus_6213#1 GGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATT 300 ************************************************************ consensus_6213#0 CGATATGCATTTTTTCAGCTTAGCGATCAAGGTTGCTCGAGTCGAATCT----------- 499 consensus_6213#1 CGATATGCATTTTTTCAGCTTAGCGATCAAGGTTGCTCGAGTCGAATCTAGTTTTTACAC 360 ************************************************* consensus_6213#0 -----------------------GTCACTGGAGGAACAACATCTAGATATCTAGACAAAG 536 consensus_6213#1 TGATTTAAGCCAAAGATTTACCTGTCACTGGAGGAACAACATCTAGATATCTAGACAAAG 420 ************************************* consensus_6213#0 CTGATCGCAGTTCATCATCG---------------------------------------- 556 consensus_6213#1 CTGATCGCAGTTCATCATCGCTGATAGTTTCCATCCCAGCGCTGATGAGCAACAGCAATC 480 ******************** consensus_6213#0 ------------------------ consensus_6213#1 ACCCACTCAACCTTTCAGTTTTGA 504 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||