These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 439 fasta sequence [GTGAACCATTTCACACTGTCCTGTGTAAATGCTTATTTCTTTCTCTTTGCTACATAACTTTCACTTTCATTTCTGATTATATAAATACAAGTTTCTGTATACTTCACTCCCGCACTTTATATTCTTTGTCACATTATTTGTTTTCAAATACTTGTTTATCATTATGATGATATGTTTAAAATTGAAATATTTTTTTCTTATGAATATATTTTTACAAATAATTTTGAATATGTTAAAGCCATGTTTCTACTTAAAAAGAACTCTCGGTGTATGTTTCATTGTTTATCGTTTTTATTATATCAGTGGACTATTTGTTGTTACCATCTTTGTCAACAGTCATTTACTAA-TGTTTACGA-TAAGGAGAACGAAGCTGTAGTCCCCTTGTCTTCGCTTTTATGTGTTTTATCCACATTAAAAGAGTTGCACACAGTTTGGAATG] [+] EMBL CD090622 [GTGAACCATTTCACACTGTCCTGTGTAAATGCTTATTTCTTTCTCTTTGCTACATAACTTTCACTTTCATTTCTGATTATATAAATACAAGTTTCTGTATACTTCACTCCCGCACTTTATATTCTTTGTCACATTATTTGTTTTCAAATACTTGTTTATCATTATGATGATATGTTTAAAATTGAAATATTTTTTTCTTATGAATATATTTTTACAAATAATTTTGAATATGTTAAAGCCATGTTTCTACTTAAAAAGAACTCTCGGTGTATGTTTCATTGTTTATCGTTTTTATTATATCAGTGGACTATTTGTTGTTACCATCTTTGTCAACAGTCATTTACTAA TGTTTACGA TAAGGAGAACGAAGCTGTAGTCCCCTTGTCTTCGCTTTTATGTGTTTTATCCACATTAAAAGAGTTGCACACAGTTTGGAATG] [+] EMBL CD084230 [ TTTATCGTTTTTATTATATCAGTGGACTATTTGTTGTTACCATCTTTGTCAACAGTCATTTACTAACTGTTTACGAGTAAGGAGAACGAAGCTGTAGTCCCCTag ] [+] EMBL AI395860 [ ACTAA TGTTTANKA TAAGGAGAACGAAGCTGTAGTCCCCTTGTCTTCGCTTTTATGTGTTTTATCCACATTAAAAGAGTTGCACACAGTTTGGAA ] consensusID : consensus_6214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 93 fasta sequence [AAAACGATAAACAATGAAACAGAGGCCGATAGTTCTTTCTAAATACAAACATGGCTTTAACATATTCAAAATCATTTGTAAAAATATATTCAT] [+] EMBL CD117801 [AAAACGATAAACAATGAAACAGAGGCCGATAGTTCTTTCTAAATACAAACATGGCTTTAACATATTCAAAATCATTTGTAAAAATATATTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6214#0 GTGAACCATTTCACACTGTCCTGTGTAAATGCTTATTTCTTTCTCTTTGCTA-CATAACT 59 consensus_6214#1 --AAAACGATAAACAATGAA--ACAGAGGCCGATAGTTCTTTCTAAATACAAACATGGCT 56 ** * * *** ** * ** ******** * * * *** ** consensus_6214#0 TTCACTTTCATTTCTGATTATATAAATACAAGTTTCTGTATACTTCACTCCCGCACTTTA 119 consensus_6214#1 TTAACAT--ATTCAAAATCATTTGTAAAAATATATTCAT--------------------- 93 ** ** * *** ** ** * * * * * * * consensus_6214#0 TATTCTTTGTCACATTATTTGTTTTCAAATACTTGTTTATCATTATGATGATATGTTTAA 179 consensus_6214#1 ------------------------------------------------------------ consensus_6214#0 AATTGAAATATTTTTTTCTTATGAATATATTTTTACAAATAATTTTGAATATGTTAAAGC 239 consensus_6214#1 ------------------------------------------------------------ consensus_6214#0 CATGTTTCTACTTAAAAAGAACTCTCGGTGTATGTTTCATTGTTTATCGTTTTTATTATA 299 consensus_6214#1 ------------------------------------------------------------ consensus_6214#0 TCAGTGGACTATTTGTTGTTACCATCTTTGTCAACAGTCATTTACTAATGTTTACGATAA 359 consensus_6214#1 ------------------------------------------------------------ consensus_6214#0 GGAGAACGAAGCTGTAGTCCCCTTGTCTTCGCTTTTATGTGTTTTATCCACATTAAAAGA 419 consensus_6214#1 ------------------------------------------------------------ consensus_6214#0 GTTGCACACAGTTTGGAATG 439 consensus_6214#1 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||