These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6244#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 945 fasta sequence [CGGCCAATATATTTGCANAGCCTTTCACGCAACTCTGCATGCTTCCCTGGTAATCATAGTACCTGGCTAAACGAAATTCGCTACAGGGTCAATGGGGATACTTGATAAAATTGCCGATATTGAGAATGAAATTGCAAGGACGCAGAAAAATAAAGCGACGGAGTACCATCTCGGTTTGCTGAAAGCTAAACTCGCCAAGTACCGATCTCAACTACTGGAGACACAAAATAAAGCTACTAAAGGTGACGGATTTGATGTTATGAAATCAGGCGATGCTCGGGTATCTTTAATTGGCTTTCCATCCGTCGGGAAGTCCACGCTCCTAAATTCTCTTACTTCTACACACAGTGAGTGCGCATCATATGAGTTCACAACTTTGACGTGCATACCGGGTGTTATTGAGTATAAAGGCGCTAATATCCAGTTATTGGATCTTCCAGGGATAATAGAAGGGGCGTCACAAGGGAAAGGGCGGGGACGCCAGGTGATTGCTGTTGCCCGGACGGCTGACCTCGTACTTATGATGCTTGACGCCACCAAGCCTGATGTCCACCGGAAGTTACTTGAAAATGAACTAGAAGCTGTGGGTATTCGATTAAATAAAAACAGACCAAATATTTATTTCAAGCAAAAGAAGACTGGTGGGTTAAAAATCACATCAATGGTTCCCTTAACAAAGATAAACGAGAAAATGACTCAAATGATACTACAAGAATATAAAATATTTAATGCAGAAGTTATCTTTCGAGAAGATTCTACACCGGATGAATTTATCGATGTAGTGGTTGGCGGTCGAGTATATCTGGCTTGTCTTTATGTGTATAATAAAATTGATCAAATATCACTTCAAGAAGTTGACAGATTAGCAAGACAGCCTCATTCAGTTGTTGTTAGTTGCAATCTAAAGCTGAATTTGGATTATTTGCTAGAAAAACTGTGGGACCA] [-] EMBL CD190251 [CGGCCAATATATTTGCANAGCCTTTCACGCAACTCTGCATGCTTCCCTGGTAATCATAGTACCTGGCTAAACGAAATTCGCTACAGGGTCAATGGGGATACTTGATAAAATTGCCGATATTGAGAATGAAATTGCAAGGACGCAGAAAAATAAAGCGACGGAGTACCATCTCGGTTTGCTGAAAGCTAAACTCGCCAAGTACCGATCTCAACTACTGGAGACACAAAATAAAGCTACTAAAGGTGACGGATTTGATGTTATGAAATCAGGCGATGCTCGGGTATCTTTAATTGGCTTTCCATCCGTCGGGAAGTCCACGCTCCTAAATTCTCTTACTTCTACACACAGTGAGTGCGCATCATATGAGTTCACAACTTTGACGTGCATACCGGGTGTTATTGAGTATAAAGGCGCTAATATCCAGTTATTGGATCTTCCAGGGATAATAGAAGGGGCGTCACAAGGGAAAGGGCGGGGACGCCAGGTGA ] [-] EMBL CD190144 [ ACCTGGCTAAACGAAATTCGCTACAGGGTCAATGGGGATACTTGATAAAATTGCCGATATTGAGAATGAAATTGCAAGGACACAGAAAAATAAAGCGACGGAGTACCATCTCGGTTTGCTGAAAGCTAAACTCGCCAAGTACCGATCTCAACTACTGGAGACACAAAATAAAGCTACTAAAGGTGACGGATTTGATGTTATGAAATCAGGCGATGCTCGGGTATCTTTAATTGGCTTTCCATCCGTCGGGAAGTCCACGCTCCTAAATTCTCTTACTTCTACACACAGTGAGTGCGCATCATATGAGTTCACAACTTTGACGTGCATACCGGGTGTTATTGAGTATAAAGGCGCTAATATCCAGTTATTGGATCTTCCAGGGATAATAGAAGGGGCGTCACAAGGGAAAGG ] [+] EMBL CD084282 [ TTGGATCTTCCAGGCATAATAGAAGGGGCGTCACAAGGGAAAGGGCGGGGACGCCAGGTGATTGCTGTTGCCCGGACGGCTGACCTCGTACTTATGATGCTTGACGCCACCAAGCCTGATGTCCACCGGAAGTTACTTGAAAATGAACTAGAAGCTGTGGGTATTCGATTAAATAAAAACAGACCAAATATTTATTTCAAGCAAAAGAAGACTGGTGGGTTAAAAATCACATCAATGGTTCCCTTAACAAAGATAAACGAGAAAATGACTCAAATGATACTACAAGAATATAAAATATTTAATGCAGAAGTTATCTTTCGAGAAGATTCTACACCGGATGAATTTATCGATGTAGTGGTTGGCGGTCGAGTATATCTGGCTTGTCTTTATGTGTATAATAAAATTGATCAAATATCACTTCAAGAAGTTGACAGATTAGCAAGACAGCCTCATTCAGTTGTTGTTAGTTGCAATCTAAAGCTGAATTTGGATTATTTGCTAGAAAAACTGTGGGACCA] consensusID : consensus_6244#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 297 fasta sequence [CTCCCGNNGCCGCCATGGCGTGCCGCGGGAAATTCGATTATAATAGAAGGGGCGTCACAAGGGAAAGGGCGGGGACGCCAGGTGATTGCTGTTGCCCGGACGGCTGACCTCGTACTTATGATGCTTGACGCCACCAAGCCTGATGTCCACCGGAAGTTACTTGAAAATGAACTAGAAGCTGTGGGTATTCGATTAAATAAAAACAGACCAAATATTTATTTCAAGCAAAAGAAGACTGGTGGGTTAAAAATCACATCAATGGTTCCCTTAACAAAGATAAACGAGAAAATGACTCAA] [+] EMBL CD130768 [CTCCCGNNGCCGCCATGGCGTGCCGCGGGAAATTCGATTATAATAGAAGGGGCGTCACAAGGGAAAGGGCGGGGACGCCAGGTGATTGCTGTTGCCCGGACGGCTGACCTCGTACTTATGATGCTTGACGCCACCAAGCCTGATGTCCACCGGAAGTTACTTGAAAATGAACTAGAAGCTGTGGGTATTCGATTAAATAAAAACAGACCAAATATTTATTTCAAGCAAAAGAAGACTGGTGGGTTAAAAATCACATCAATGGTTCCCTTAACAAAGATAAACGAGAAAATGACTCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6244#0 CGGCCAATATATTTGCANAGCCTTTCACGCAACTCTGCATGCTTCCCTGGTAATCATAGT 60 consensus_6244#1 ------------------------------------------------------------ consensus_6244#0 ACCTGGCTAAACGAAATTCGCTACAGGGTCAATGGGGATACTTGATAAAATTGCCGATAT 120 consensus_6244#1 ------------------------------------------------------------ consensus_6244#0 TGAGAATGAAATTGCAAGGACGCAGAAAAATAAAGCGACGGAGTACCATCTCGGTTTGCT 180 consensus_6244#1 ------------------------------------------------------------ consensus_6244#0 GAAAGCTAAACTCGCCAAGTACCGATCTCAACTACTGGAGACACAAAATAAAGCTACTAA 240 consensus_6244#1 ------------------------------------------------------------ consensus_6244#0 AGGTGACGGATTTGATGTTATGAAATCAGGCGATGCTCGGGTATCTTTAATTGGCTTTCC 300 consensus_6244#1 ------------------------------------------------------------ consensus_6244#0 ATCCGTCGGGAAGTCCACGCTCCTAAATTCTCTTACTTCTACACACAGTGAGTGCGCATC 360 consensus_6244#1 ------------------------------------------------------------ consensus_6244#0 ATATGAGTTCACAACTTTGACGTGCATACCGGGTGTTATTGAGTATAAAGGCGCTAATAT 420 consensus_6244#1 ------------------------------------------CTCCCGNNGCCGCCATGG 18 * ** ** consensus_6244#0 CCAGTTATTGGATCTTCCAGGGATAATAGAAGGGGCGTCACAAGGGAAAGGGCGGGGACG 480 consensus_6244#1 CGTGCCGCGGGAAATTC-GATTATAATAGAAGGGGCGTCACAAGGGAAAGGGCGGGGACG 77 * * *** *** ************************************** consensus_6244#0 CCAGGTGATTGCTGTTGCCCGGACGGCTGACCTCGTACTTATGATGCTTGACGCCACCAA 540 consensus_6244#1 CCAGGTGATTGCTGTTGCCCGGACGGCTGACCTCGTACTTATGATGCTTGACGCCACCAA 137 ************************************************************ consensus_6244#0 GCCTGATGTCCACCGGAAGTTACTTGAAAATGAACTAGAAGCTGTGGGTATTCGATTAAA 600 consensus_6244#1 GCCTGATGTCCACCGGAAGTTACTTGAAAATGAACTAGAAGCTGTGGGTATTCGATTAAA 197 ************************************************************ consensus_6244#0 TAAAAACAGACCAAATATTTATTTCAAGCAAAAGAAGACTGGTGGGTTAAAAATCACATC 660 consensus_6244#1 TAAAAACAGACCAAATATTTATTTCAAGCAAAAGAAGACTGGTGGGTTAAAAATCACATC 257 ************************************************************ consensus_6244#0 AATGGTTCCCTTAACAAAGATAAACGAGAAAATGACTCAAATGATACTACAAGAATATAA 720 consensus_6244#1 AATGGTTCCCTTAACAAAGATAAACGAGAAAATGACTCAA-------------------- 297 **************************************** consensus_6244#0 AATATTTAATGCAGAAGTTATCTTTCGAGAAGATTCTACACCGGATGAATTTATCGATGT 780 consensus_6244#1 ------------------------------------------------------------ consensus_6244#0 AGTGGTTGGCGGTCGAGTATATCTGGCTTGTCTTTATGTGTATAATAAAATTGATCAAAT 840 consensus_6244#1 ------------------------------------------------------------ consensus_6244#0 ATCACTTCAAGAAGTTGACAGATTAGCAAGACAGCCTCATTCAGTTGTTGTTAGTTGCAA 900 consensus_6244#1 ------------------------------------------------------------ consensus_6244#0 TCTAAAGCTGAATTTGGATTATTTGCTAGAAAAACTGTGGGACCA 945 consensus_6244#1 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||