These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_631#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 305 fasta sequence [CATAGGCAATTGCCGCAGCTGGCGGCTCGTTAATGATTCTCAACACATTAGGACCAACTATAACACCTGCATCTTTCGTTGCTTGACGTTGACTGTCATTGAAGTAAGCAAGAACCGTTATAACAGCGTCACTCGCCGTGCTGCCCAAATAACTTTCACCAACCTCCTTCATCTTCGTCAACACCATTGACGAAATCTCCTCAGCGGAAAACATCTTTTTCTCACCCTTGTACTCAACACAAATCTTCAGCTTCCCACTAGAACTCAAGGAAATATCTCTTGAAGTCAGTCACTAGTGAGCATAT] [+] EMBL CD113985 [CATAGGCAATTGCCGCAGCTGGCGGCTCGTTAATGATTCTCAACACATTAGGACCAACTATAACACCTGCATCTTTCGTTGCTTGACGTTGACTGTCATTGAAGTAAGCAAGAACCGTTATAACAGCGTCACTCGCCGTGCTGCCCAAATAACTTTCACCAACCTCCTTCATCTTCGTCAACACCATTGACGAAATCTCCTCAGCGGAAAACATCTTTTTCTCACCCTTGTACTCAACACAAATCTTCAGCTTCCCACTAGAACTCAAGGAAATATCTCTTGAAGTCAGTCACTAGTGAGCATAT] consensusID : consensus_631#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence [TCACCTCGAATATCCATCCTCATTGGGAGAGGAGGGCCCAATATGGATGTGCCCCCCCCCCGAAAACAAAATTCAAAATTTTTCCCCTCCACCCTTTTTTTTGTAAAAAAAAAGGGGGGAAATCGCCGAAGTTGCCGGCTGGTTAAGGATTCTCAACACATTAAGACCAGCTATAGCACCTGCATCTTTCGTTGCTTGACGTTGACTGTCATTGAAGTAAGCAGGAACCGTTATAACAGCGTCACTCACCGTCCT] [+] EMBL CD180909 [TCACCTCGAATATCCATCCTCATTGGGAGAGGAGGGCCCAATATGGATGTGCCCCCCCCCCGAAAACAAAATTCAAAATTTTTCCCCTCCACCCTTTTTTTTGTAAAAAAAAAGGGGGGAAATCGCCGAAGTTGCCGGCTGGTTAAGGATTCTCAACACATTAAGACCAGCTATAGCACCTGCATCTTTCGTTGCTTGACGTTGACTGTCATTGAAGTAAGCAGGAACCGTTATAACAGCGTCACTCACCGTCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_631#0 ------------------------------------------------------------ consensus_631#1 TCACCTCGAATATCCATCCTCATTGGGAGAGGAGGGCCCAATATGGATGTGCCCCCCCCC 60 consensus_631#0 -----------------------------------------------------CATAGGC 7 consensus_631#1 CGAAAACAAAATTCAAAATTTTTCCCCTCCACCCTTTTTTTTGTAAAAAAAAAGGGGGGA 120 ** consensus_631#0 AATTGCCGCAGCTGGCGGCTCGTTAATGATTCTCAACACATTAGGACCAACTATAACACC 67 consensus_631#1 AATCGCCGAAGTTGCCGGCTGGTTAAGGATTCTCAACACATTAAGACCAGCTATAGCACC 180 *** **** ** ** ***** ***** **************** ***** ***** **** consensus_631#0 TGCATCTTTCGTTGCTTGACGTTGACTGTCATTGAAGTAAGCAAGAACCGTTATAACAGC 127 consensus_631#1 TGCATCTTTCGTTGCTTGACGTTGACTGTCATTGAAGTAAGCAGGAACCGTTATAACAGC 240 ******************************************* **************** consensus_631#0 GTCACTCGCCGTGCTGCCCAAATAACTTTCACCAACCTCCTTCATCTTCGTCAACACCAT 187 consensus_631#1 GTCACTCACCGTCCT--------------------------------------------- 255 ******* **** ** consensus_631#0 TGACGAAATCTCCTCAGCGGAAAACATCTTTTTCTCACCCTTGTACTCAACACAAATCTT 247 consensus_631#1 ------------------------------------------------------------ consensus_631#0 CAGCTTCCCACTAGAACTCAAGGAAATATCTCTTGAAGTCAGTCACTAGTGAGCATAT 305 consensus_631#1 ---------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||