These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6313#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence [TTTACAGGTTGGCAGCCCGGGTTCCGATGGAGTTCAAATTGTACGCACTATACCTTCTTTTGTCAGTTCTACTACTCAAATAATTTCATTTCCAACTGTTGCAACACAACAACCAGTCGCAGCCCAGTCAAGCAATCCTAGACAACAAATTCAGCAACAACAAAAGATATGTTACAATTAAAAATTATTAATTTTCAACAATTACCAGAAATTCAACCAAGAGTTATTAACGGCAACCATAACAATAATAATACGAACGCAAATCTCAACCACAGTAATAACAATACCAAAATGATGAATCGAACTAGTTTTGTACGTGCTGATCTTAGACGACGTAATACACAACGTTCTACAAGTGTTGATATGGCAAGGATTAATCGACCGCTGAGTATTGATAATAATATAATGGCTAATAATCATAAAATTACTACTAATACTACTAATACTACTACTAACAGTGATTATAACAGTGGTAGTAGTACTAATAATGACCAAGTTACCAATACTAACTACAA] [+] EMBL CD187662 [TTTACAGGTTGGCAGCCCGGGTTCCGATGGAGTTCAAATTGTACGCACTATACCTTCTTTTGTCAGTTCTACTACTCAAATAATTTCATTTCCAACTGTTGCAACACAACAACCAGTCGCAGCCCAGTCAAGCAATCCTAGACAACAAATTCAGCAACAACAAAAGATATGTTACAATTAAAAATTATTAATTTTCAACAATTACCAGAAATTCAACCAAGAGTTATTAACGGCAACCATAACAATAATAATACGAACGCAAATCTCAACCACAGTAATAACAATACCAAAATGATGAATCGAACTAGTTTTGTACGTGCTGATCTTAGACGACGTAATACACAACGTTCTACAAGTGTTGATATGGCAAGGATTAATCGACCGCTGAGTATTGATAATAATATAATGGCTAATAATCATAAAATTACTACTAATACTACTAATACTACTACTAACAGTGATTATAACAGTGGTAGTAGTACTAATAATGACCAAGTTACCAATACTAACTACAA] consensusID : consensus_6313#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 463 fasta sequence [TAAGACGTGACCAGCCAGAAGTTTAAACCCAACGAGTTTGTCGTTGGTAAATACTCTTCTGATAGCTTGTTTCGTTTAGCTGTCGATTATAAATTCATCTTTCTGCTTAATCACTATCAACTAACTACTATCAGAAACTATCTACTAGAATAATTTACTTTCTTGACCACTGCCTGCCTAATTTCCAATTGCTGAGTTCCATGGCGAATCAGAGGATACGAATGCTAGAAATTTACGGTGAGTTTGAACTATAAATTTCCTGCAATGTTATATCTTGTTTAAACTGTTTCGCCAGGCAAGGTTACGTGTTTGGCTCAAATTAAATTTGGACGCATACCATTTCAGTGTACAACGCTTCGTTAATTTATTAATTTCAGCAGCAGATTTCAATTACTTGGGAGCAAGAGTAATCCAGGCGAGCTTCATAACTGTGTCAAATCCATTTGTATAATGTTTATGATGT] [+] EMBL CD133548 [TAAGACGTGACCAGCCAGAAGTTTAAACCCAACGAGTTTGTCGTTGGTAAATACTCTTCTGATAGCTTGTTTCGTTTAGCTGTCGATTATAAATTCATCTTTCTGCTTAATCACTATCAACTAACTACTATCAGAAACTATCTACTAGAATAATTTACTTTCTTGACCACTGCCTGCCTAATTTCCAATTGCTGAGTTCCATGGCGAATCAGAGGATACGAATGCTAGAAATTTACGGTGAGTTTGAACTATAAATTT ] [-] EMBL CD060791 [ CCAATTGGTGAGTTCCATGGCGAATCAGAGGATACAAATGCTATAAATTTGCGGTGAGTTTGAACCATAAATTTCCTGCAATGTTATATCTTGTTTAAACTGTTTCGCCAGGCAAGGTTACGTGTTTGGCTCAAATTAAATTTGGACGCATACCATTTCAGTGTACAACGCTTCGTTAATTTATTAATTTCAGCAGCAGATTTCAATTACTTGGGAGCAAGAGTAATCCAGGCGAGCTTCATAACTGTGTCAAATCCATTTGTATAATGTTTATGATGT] consensusID : consensus_6313#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence [TCAGTAAGGAGCGGAGCCAGACAAGGCTGTCTACTCTCCCTCTTCCTCTTTCTTCTAGTGATTGGCTGGATTATGAAAACCACAACATCTGAGGGGAAGCACGGAATACAATCGACATCTCAGAATCAATTAGATGATTTGGACTTCGCAGATCACTTATCCATCCTATACCATACAAACGAACAAATACTGATGAAGACAACAAATGTAGCAGCTGCCTCTGCATCAATAGGTCTCAACATACACAAGGGGAAAAGCAACATTCTCAAATACAACATGGAGAACATCAAGCCAATCATATTTGATGGGG] [+] EMBL CD149157 [TCAGTAAGGAGCGGAGCCAGACAAGGCTGTCTACTCTCCCTCTTCCTCTTTCTTCTAGTGATTGGCTGGATTATGAAAACCACAACATCTGAGGGGAAGCACGGAATACAATCGACATCTCAGAATCAATTAGATGATTTGGACTTCGCAGATCACTTATCCATCCTATACCATACAAACGAACAAATACTGATGAAGACAACAAATGTAGCAGCTGCCTCTGCATCAATAGGTCTCAACATACACAAGGGGAAAAGCAACATTCTCAAATACAACATGGAGAACATCAAGCCAATCATATTTGATGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6313#1 -TAAGACGTGACCAGCCAGAAGTTTAAACCCAACGAGTTTGTCGTTGGTAAATACTCTTC 59 consensus_6313#2 ------------------------------------------------------------ consensus_6313#0 TTTACAGGTTGGCAGCCCGGGTTCCGATGGAGTTCAAATTGTACGCACTATACCTTCTTT 60 consensus_6313#1 TGATAGCTTGTTTCGTTTAGCTGTCG-ATTATAAATTCATCTTTCTGCTTAATCACTATC 118 consensus_6313#2 ----------------------------------------------------TCAGTAAG 8 consensus_6313#0 TGTCAGTTCTACTACTCAAATAATTTCATTTCCAACTGTTGCAACACAACAACCAGTCGC 120 ** * consensus_6313#1 AACTAACT---ACTATCAGAAACTATCTACTA--GAATAATTTACTTTCTTGACCACT-- 171 consensus_6313#2 GAGCGGA----GCCAGACAAGGCTGTCTACTC--TCCCT-CTTCCTCTTTCTTCTAGT-- 59 consensus_6313#0 AGCCCAGTCAAGCAATCCTAGACAACAAATTCAGCAACAACAAAAGATATGTTACAATTA 180 * * * * * * * * * * consensus_6313#1 -GCCTGCCTAATTTCCAATTGCTG--AGTTCCATGGCGAATCAGAGGATACGAATGCTAG 228 consensus_6313#2 -GATTGGCTGGATTATGAAAACCACAACATCTGAGGGGAAGCACGGAATACAATCGACAT 118 consensus_6313#0 AAAATTATTAATTTTCAACAATTAC----CAGAAATTCAACCAAGAGTTATTAACGGCAA 236 * * ** * ** ** ** * * * consensus_6313#1 AAATTTACGGTGAGTTTGA-ACTATAAATTTCCTGCAATGTTATATCTTGTTTAAACTGT 287 consensus_6313#2 ---CTCAGAATCAATTAGATGATTTGGACTTCGCAGATCACT-TATCCATCCTATACCAT 174 consensus_6313#0 CC-ATAACAATAATAATACGAACGCAAATCTCAACCACAGTAATAACAATACCAAAATGA 295 * * * * * ** * ** * * * consensus_6313#1 TTCGCCAGGCAAGGT---TACGTGTTTG----GCTCAAATTAA-ATTTGGACGCATACCA 339 consensus_6313#2 ACAAACGAACAAA-----TAC-TGATGA----AGACAA--CAA-ATGTAGCAGC-TGCCT 220 consensus_6313#0 TGAATCGAACTAGTTTTGTACGTGCTGATCTTAGACGACGTAATACACAACGTTCTACAA 355 * * * *** ** * * * ** * * * consensus_6313#1 TTTC--AGTGTACAACGCTTCGTTAATTTATTAATTTCAGCAGCAGATTTCAATTACTTG 397 consensus_6313#2 CTGC--ATCA-ATAGGTCTCAACATACACAAGGGGAAAAGCAACATTCTCAAATACAACA 277 consensus_6313#0 GTGTTGATATGGCAAGGATTAATCGACCGCTGAGTATTGATAATAATATAATGGCTAATA 415 * * * * * * * * consensus_6313#1 GGAGCAAGAGTAATCCAGGCGAGCTTCATAACTGTGTCAAATCCATTTGTA-TAATGTTT 456 consensus_6313#2 TGGAGAACATCAAGCCAATCATATTTGATGGGG--------------------------- 310 consensus_6313#0 ATCATAAAATTACTACTAATACTACTAATACTACTACTAACAGTGATTATAACAGTGGTA 475 ** * * * * ** consensus_6313#1 ATGATGT--------------------------------- 463 consensus_6313#2 ---------------------------------------- consensus_6313#0 GTAGTACTAATAATGACCAAGTTACCAATACTAACTACAA 515 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||