These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6317#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 654 fasta sequence [GTCGTAATACAAGGTAAGCTAAGTACCTATGTAATTGTTAAGATAAACCGTTCTCTCCAACGTCTATTGTCATCCAGGCACTATCTGAAAGCTCAATGAACGTATCATGGGTCTTCGGAAATAGTCAAAATAGTCCCATTTCTCTTCATACTGTCTATTTACATGACAATAATAGCCTAGTTTTACAAAAGAACGTATCATCCCCTCTGTCCAGTACAACACTTCATAATTTGAAGCCCTATACTTGCTACACTTTGTACATTCGCGCTTTGAATGACATTGGTTGGAGTGAATTCAGTAAACCCAGTCACTCACTCACTCTTCCTGGTTTGCCCGTTGCTCATCCAGCAGTTCACATCATCAATGTATCTAGTCACTCAATTTCTCTAGATGTAGGTATCGCAACTTTAAAGGACGTCATTCAAGATAATGTCAAAAGATGTATAGATCAAGATGCTCGATTTATATCGTTACTACATGGCCCACTGGTCGGTTACATTGTCACGGTTGCTACAACTCAGCCTTACAAGTTTGCTTCAAAAACTTTATACAATGCATCTGGATCTTACTCTCAGATTGTAGATATATCCCATCTAAAGCCATACACACGGTACAATCTGTCGTTCGCTTTTTATAATGGTCGTTTTTCTGGCC] [+] EMBL CD162977 [GTCGTAATACAAGGTAAGCTAAGTACCTATGTAATTGTTAAGATAAACCGTTCTCTCCAACGTCTATTGTCATCCAGGCACTATCTGAAAGCTCAATGAACGTATCATGGGTCTTCGGAAATAGTCAAAATAGTCCCATTTCTCTTCATACTGTCTATTTACATGACAATAATAGCCTAGTTTTACAAAAGAACGTATCATCCCCTCTGTCCAGTACAACACTTCATAATTTGAAGCCCTATACTTGCTACACTTTGTACATTCGCGCTTTGAATGACATTGGTTGGAGTGAATTCAGTAAACCCAGTCACTCACTCACTCTTCCTGGTTTGCCCGTTGCTCATCCAGCAGTTCACATCATCAATGTATCTAGTCACTCAATTTCTCTAGATGTAGGTATCGCAACTTTAAAGGACGTCATTCAAGATAATGTCAAAAGATGTATAGATCAAGATGCTCGATTTATATCGTTACTACATGGCCCACTGGTCGGTTACATTGTCACGGTTGCTACAACTCAGCCTTACAAGTTTGCTTCAAAAACTTTATACAATGCATCTGGATCTTACTCTCAGATTGTAGATATATCCCATCTAAAGCCATAC ] [+] EMBL CD162911 [ CAATGAACGTATCATGGGTCTTCGGAAATAGTCAAAATAGTCCCATTTCTCTTCATACTGTCTATTTACATGACAATAATAGCCTAGTTTTACAAAAGAACGTATCATCCNCTCTGTCCAGTACAACACTTCATAATTTG ] [-] EMBL CD184918 [ ACTTGCTACACTTTGTACATTCGCGCTTTGAATGACATTGGTTGGAGTGAATTCAGTAAACCCAGTCACTCACTCACTCTTCCTGGTTTGCCCGTTGCTCATCCAGCAGTTCACATCATCAATGTATCTAGTCACTCAATTTCTCTAGATGTAGGTATCGCAGCCTTAAAGGACGTCATTCAAGATAATGTCAAAAGATGTATAGATCAAGATGCTCGATTTATATCGTTACTACATGGCCCACTGGTCGGTTACATTGTCACGGTTGCTACAACTCAGCCTTACAAGTTTGCTTCAAAAACTTTATACAATGCATCTGGATCTTACTCTCAGATTGTAGATATATCCCATCTAAAGCCATACACACGGTACAATCTGTCGTTCGCTTTTTATAATGGTCGTTTTTCTGGCC] consensusID : consensus_6317#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 239 fasta sequence [GCCGATTGTTTCTTATTGGAGACTTGAAGTACCACCAGTCATTACTCGCCGTAATACAAGATAAACCGTTCTCTCCAACGTCTATTGTCATCCAGGCACTATCTGAAAGCTCAATGAACGTATCATGGGTCTCCGGAAATAGTCAAAATAGTCCCATTTCTCTTCATACTGTCTATTTACATGACAATAATAGCCTAGTTTTACAAAAGAACGTATGTAAAACTACGGCCAGTGAAACA] [-] EMBL CD200563 [GCCGATTGTTTCTTATTGGAGACTTGAAGTACCACCAGTCATTACTCGCCGTAATACAAGATAAACCGTTCTCTCCAACGTCTATTGTCATCCAGGCACTATCTGAAAGCTCAATGAACGTATCATGGGTCTCCGGAAATAGTCAAAATAGTCCCATTTCTCTTCATACTGTCTATTTACATGACAATAATAGCCTAGTTTTACAAAAGAACGTATGTAAAACTACGGCCAGTGAAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6317#0 ---------------GTCGTAATACAAGGTAAGCTAAGTACCTAT--GTAATTGT-TAAG 42 consensus_6317#1 GCCGATTGTTTCTTATTGGAGACTTGAAGTACCACCAGTCATTACTCGCCGTAATACAAG 60 * * * * *** *** ** * * * *** consensus_6317#0 ATAAACCGTTCTCTCCAACGTCTATTGTCATCCAGGCACTATCTGAAAGCTCAATGAACG 102 consensus_6317#1 ATAAACCGTTCTCTCCAACGTCTATTGTCATCCAGGCACTATCTGAAAGCTCAATGAACG 120 ************************************************************ consensus_6317#0 TATCATGGGTCTTCGGAAATAGTCAAAATAGTCCCATTTCTCTTCATACTGTCTATTTAC 162 consensus_6317#1 TATCATGGGTCTCCGGAAATAGTCAAAATAGTCCCATTTCTCTTCATACTGTCTATTTAC 180 ************ *********************************************** consensus_6317#0 ATGACAATAATAGCCTAGTTTTACAAAAGAACGTATCATCCCCTCTGTCCAGTACAACAC 222 consensus_6317#1 ATGACAATAATAGCCTAGTTTTACAAAAGAACGTATGTAAAACTACGGCCAGTGAAACA- 239 ************************************ ** * ***** **** consensus_6317#0 TTCATAATTTGAAGCCCTATACTTGCTACACTTTGTACATTCGCGCTTTGAATGACATTG 282 consensus_6317#1 ------------------------------------------------------------ consensus_6317#0 GTTGGAGTGAATTCAGTAAACCCAGTCACTCACTCACTCTTCCTGGTTTGCCCGTTGCTC 342 consensus_6317#1 ------------------------------------------------------------ consensus_6317#0 ATCCAGCAGTTCACATCATCAATGTATCTAGTCACTCAATTTCTCTAGATGTAGGTATCG 402 consensus_6317#1 ------------------------------------------------------------ consensus_6317#0 CAACTTTAAAGGACGTCATTCAAGATAATGTCAAAAGATGTATAGATCAAGATGCTCGAT 462 consensus_6317#1 ------------------------------------------------------------ consensus_6317#0 TTATATCGTTACTACATGGCCCACTGGTCGGTTACATTGTCACGGTTGCTACAACTCAGC 522 consensus_6317#1 ------------------------------------------------------------ consensus_6317#0 CTTACAAGTTTGCTTCAAAAACTTTATACAATGCATCTGGATCTTACTCTCAGATTGTAG 582 consensus_6317#1 ------------------------------------------------------------ consensus_6317#0 ATATATCCCATCTAAAGCCATACACACGGTACAATCTGTCGTTCGCTTTTTATAATGGTC 642 consensus_6317#1 ------------------------------------------------------------ consensus_6317#0 GTTTTTCTGGCC 654 consensus_6317#1 ------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||