These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6359#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 863 fasta sequence [TAGTGATTTTTTGAAAGTAACAGGAAAATTGGTTGGTTGGATTTGTCTGGAAGAGATATTTAGTGAAAAGATGTGATGCCTTTAAACTTGTAAATTCTTTTAAAACGTGCTTAAGTGGAGAGTTATATAAAATGTACCTACCTTTATATGTTTGAAGTCAAACATATTTCGTTTTACAAATGTCTCCTTGATTTTTTGATTAGTCCACGAGATAAACAACTTGTAATACTCATTAGCTTTTTCAGCCATTCCCATGGAGAAGTAAATTGGGACGGAAATATTCATTCTTTCCCAATATGTTTCAAGCAATATACAAAGTTCTTGAGCTCGACCTAAGGCAAAGACAGGGATCAAGACTTTACCGCCAGCCTCAACGCGAGCATGTATCTTTTCCAAAAATTCCCGTTCTCTTGTACGTTTTGAATCTCGTATTGTCGTTGCGTAAGTGCTTTCCGTAATGAGAAGATCTGGACGACAACGAGAAACCCAAGCTGCACCAAGATGTCTATCGGGTGTCATGTTGTAATCGCCGGTATACAAGACAGAATTCGTTCCTACGCGTACAAGAAACATTGCTGCTCCCAGAACGTGGCCAGCATAAAATGCCTGTATTTCGAGCTCATCATCTACTTTGACTGTTTGATGTATGTACGCACACCTAACTTTCGTCATACACCGATATATCATATCAGAAGTGAAAAAGTTTTGATCTCCTCTCCTCTCAACATTGATTTTACGATAATCTTCCAAAAGTATCGAGCAAATTGCCTTGGTAGGATGAGTCATATAGATTGGACCATCGTAGCCTATTACTTCGGTCATATAAGGAAGAGCTCCACAGTGGTCGAGATGGAAATGACTAA] [+] EMBL CD127489 [TAGTGATTTTTTGAAAGTAACAGGAAAATTGGTTGGTTGGATTTGTCTGGAAGAGATATTTAGTGAAAAGATGTGATGCCTTTAAACTTGTAAATTCTTTTAAAACGTGCTTAAGTGGAGAGTTATATAAAATGTACCTACCTTTATATGTTTGAAGTCAAACATATTTCGTTTTACAAATGTCTCCTTGATTTTTTGATTAGTCCACGAGATAAACAACTTGTAATACTCATTAGCTTTTTCAGCCATTCCCATGGAGAAGTAAATTGGGACGGAAATATTCATTCTTTCCCAATATGTTTCAAGCAATATACAAAGTTCTTGAGCTCGACCTAAGGCAAAGACAGGGATCAAGACTTTACCGCCAGCCTCAACGCGAGCATGTATCTTTTCCAAAAATTCCCGTTCTCTTGTACGTTTTGAATCTCGTATTGTCGTTGCGTAAGTGCTTTCCGTAATGAGAAGATCTGGACGACAACGAGAAACCCAAGCTGCACCAAGATGTCTATCGGGTGTCATGTTGTAATCGCCGGTATACAAGACAGAATTTGTTCCTACGCGTACAAGATACATTGCTGCTCCCAGAACGTGGCCAGCATAAAATGCCTGTATTT ] [+] EMBL CD124997 [ GTGTCATGTTGTAATCGCCGGTATACAAGACAGAATTCGTTCCTACGCGTACAAGAAACATTGCTGCTCCCAGAACGTGGCCAGCATAAAATGCCTGTATTTCGAGCTCATCATCTACTTTGACTGTTTGATGTATGTACGCACACCTAACTTTCGTCATACACCGATATATCATATCAGAAGTGAAAAAGTTTTGATCTCCTCTCCTCTCAACATTGATTTTACGATAATCTTCCAAAAGTATCGAGCAAATTGCCTTGGTAGGATGAGTCATATAGATTGGACCATCGTAGCCTATTACTTCGGTCATATAAGGAAGAGCTCCACAGTGGTCGAGATGGAAATGACTAA] [+] EMBL CD124989 [ GTGTCATGTTGTAATCGCCGGTATACAAGACAGAATTCGTTCCTACGCGTACAAGAAACATTGCTGCTCCCAGAACGTGGCCAGCATAAAATGCCTGTATTTCGAGCTCATCATCTACTTTGACTGTTTGATGTATGTACGCACACCTAACTTTCGTCATACACCGATATATCATATCAGAAGTGAAAAAGTTTTGATCTCCTCTCCTCTCAACATTGATTTTACGATAATCTTCCAAAAGTATCGAGCAAATTGCCTTGGTAGGATGAGTCATATAGATTGGACCATCGTAGCCTATTACTTCGGTCATATAAGGAAGAGCTCCACAGTGGTCGAGATGGAAATGACTAA] consensusID : consensus_6359#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 505 fasta sequence [TATCAACTGCATAATACCACGAGCATCTGCATGAGCTGAGAACGATAAGTATTCAACTGCCATTTTCACTTCTAAAACTTGTTTATCAAATTCAAGACGCCTGACTCCATTTAAAATCTTGTAACCTACAGTCCCAGCAACACAATATCCTGGAATTACAACCATATTTCTTTCATCTGAAGCCCATTTACGAAATATATACAAAGATTGTCCAGCGTGAAGCATACCTGGTGTGGCGAAGACTACCATTGGTCCTGGATTATCGACTGTCCCTTGCCCAAGAGGCTTTATATGTTTGAAGTCAAACATATTTCGTTTTACAAATGTCTCCTTGATTTTTTGATTAGTCCACGAGATAAACAACTTGTAATACTCACTAGCTTTTTCAGCCATTCCCATGGAGAAGTAAATTGGGACGGAAATATTCATTCTTTCCCAATATGTTTCAAGCAATATACAAAGTTCTTGAGCTCGACCTAAGGCAAAGACAGGGATCAAGACTTTA] [+] EMBL CD161023 [TATCAACTGCATAATACCACGAGCATCTGCATGAGCTGAGAACGATAAGTATTCAACTGCCATTTTCACTTCTAAAACTTGTTTATCAAATTCAAGACGCCTGACTCCATTTAAAATCTTGTAACCTACAGTCCCAGCAACACAATATCCTGGAATTACAACCATATTTCTTTCATCTGAAGCCCATTTACGAAATATATACAAAGATTGTCCAGCGTGAAGCATACCTGGTGTGGCGAAGACTACCATTGGTCCTGGATTATCGACTGTCCCTTGCCCAAGAGGCTTTATATGTTTGAAGTCAAACATATTTCGTTTTACAAATGTCTCCTTGATTTTTTGATTAGTCCACGAGATAAACAACTTGTAATACTCACTAGCTTTTTCAGCCATTCCCATGGAGAAGTAAATTGGGACGGAAATATTCATTCTTTCCCAATATGTTTCAAGCAATATACAAAGTTCTTGAGCTCGACCTAAGGCAAAGACAGGGATCAAGACTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6359#0 ------------------------------------------------------------ consensus_6359#1 TATCAACTGCATAATACCACGAGCATCTGCATGAGCTGAGAACGATAAGTATTCAACTGC 60 consensus_6359#0 ------------------------------------------------------------ consensus_6359#1 CATTTTCACTTCTAAAACTTGTTTATCAAATTCAAGACGCCTGACTCCATTTAAAATCTT 120 consensus_6359#0 -------------------TAGTGATTTTTTGAAAGTAACAGGAAAATTGGTTGGTTGGA 41 consensus_6359#1 GTAACCTACAGTCCCAGCAACACAATATCCTGGAATTACAACCATATTTCTTTCATCTGA 180 ** * ** ** ** * * * ** ** * ** consensus_6359#0 TTTGTCTGGAAGAGATATTTAGTGAAAAGATGTGATGCCTTTAAACTTGTAAATTCTTTT 101 consensus_6359#1 AGCCCATTTACGAAATATATA--CAAAGATTGTCCAGCGTGAAGCATACCTGGTGTGGCG 238 * * ** **** ** *** *** ** * * * * consensus_6359#0 AAAACGTGCTTAAGTGGAGAGTTATATAAAATG---TACCTAC----CTTTATATGTTTG 154 consensus_6359#1 AAGACTACCATTGGTCCTGGATTATCGACTGTCCCTTGCCCAAGAGGCTTTATATGTTTG 298 ** ** * * ** * **** * * * ** * ************* consensus_6359#0 AAGTCAAACATATTTCGTTTTACAAATGTCTCCTTGATTTTTTGATTAGTCCACGAGATA 214 consensus_6359#1 AAGTCAAACATATTTCGTTTTACAAATGTCTCCTTGATTTTTTGATTAGTCCACGAGATA 358 ************************************************************ consensus_6359#0 AACAACTTGTAATACTCATTAGCTTTTTCAGCCATTCCCATGGAGAAGTAAATTGGGACG 274 consensus_6359#1 AACAACTTGTAATACTCACTAGCTTTTTCAGCCATTCCCATGGAGAAGTAAATTGGGACG 418 ****************** ***************************************** consensus_6359#0 GAAATATTCATTCTTTCCCAATATGTTTCAAGCAATATACAAAGTTCTTGAGCTCGACCT 334 consensus_6359#1 GAAATATTCATTCTTTCCCAATATGTTTCAAGCAATATACAAAGTTCTTGAGCTCGACCT 478 ************************************************************ consensus_6359#0 AAGGCAAAGACAGGGATCAAGACTTTACCGCCAGCCTCAACGCGAGCATGTATCTTTTCC 394 consensus_6359#1 AAGGCAAAGACAGGGATCAAGACTTTA--------------------------------- 505 *************************** consensus_6359#0 AAAAATTCCCGTTCTCTTGTACGTTTTGAATCTCGTATTGTCGTTGCGTAAGTGCTTTCC 454 consensus_6359#1 ------------------------------------------------------------ consensus_6359#0 GTAATGAGAAGATCTGGACGACAACGAGAAACCCAAGCTGCACCAAGATGTCTATCGGGT 514 consensus_6359#1 ------------------------------------------------------------ consensus_6359#0 GTCATGTTGTAATCGCCGGTATACAAGACAGAATTCGTTCCTACGCGTACAAGAAACATT 574 consensus_6359#1 ------------------------------------------------------------ consensus_6359#0 GCTGCTCCCAGAACGTGGCCAGCATAAAATGCCTGTATTTCGAGCTCATCATCTACTTTG 634 consensus_6359#1 ------------------------------------------------------------ consensus_6359#0 ACTGTTTGATGTATGTACGCACACCTAACTTTCGTCATACACCGATATATCATATCAGAA 694 consensus_6359#1 ------------------------------------------------------------ consensus_6359#0 GTGAAAAAGTTTTGATCTCCTCTCCTCTCAACATTGATTTTACGATAATCTTCCAAAAGT 754 consensus_6359#1 ------------------------------------------------------------ consensus_6359#0 ATCGAGCAAATTGCCTTGGTAGGATGAGTCATATAGATTGGACCATCGTAGCCTATTACT 814 consensus_6359#1 ------------------------------------------------------------ consensus_6359#0 TCGGTCATATAAGGAAGAGCTCCACAGTGGTCGAGATGGAAATGACTAA 863 consensus_6359#1 ------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||