These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6388#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 951 fasta sequence [GTAATTTAGCGACTAGCTGTAGATTTAGTGCAATTATTTTTATATGCGCAACTGTGATCCTGACGTATTTGCAGAATAAACCAATACAAGAAAATATGATTCATCAAGCAAATTAATCCAAGAATCATTTATAAACCTACACATTAATTAACGGATATTAGTATAAATAATGTTACGATCAAGAAAGTCTGCACCTGTCCAGTCTACCAATACCAAAGATGAACTAGCAACTGGTGGTTTGTCATCTGTAGATATTGGCTGGGTGGGACCTATAACTTTACGCAGACGTGCTAAACCGGAATTGGAAAATGAACAACACAAAGATGTATCACTTCGAATATCTATACAAGAAGTTAAAAATCTTTCAGCTAAAGGACGATACTTTTGTGAAATATGTTTGGATCGTACATTATATGCGCGTACAACTAGTAAACTGTCAGATGGAACTGTATTCTGGGGGGAACAATTTGACTTAAACAATTTGCCTATAATATCCATTATGACAATATATTTATTCAGGCAAGCAACTTCTGTAAAAGACAAACGACAAAGGAACAAAAATCAGAATCAATTTATCGGTTATGTTACTATTCCATTGAACGATGATTCACAACAATGTGAGATACAAAAATGGTTTATAATGCAACCTCCACAAATTAACTCAAATTTAAATTTTCTAGAGAATCTACAAGTTTGTCATCAACAACATCAGCAACAGACAGATACAAATCAAACTCCGTCGATCAATTCTTCAACTGGAGTATCGGGACGACTTCGTAAACATTCTATTCCAGCTTCATGTTTTGGATATTCTAATTCATTTTCAATTATACCCAATTCACAGTATACTACTAATAGTAATAATAAATTAAATGATGATAATGAACTAAAGTATAACCATATGGAACTGTCGAAAAAGAAATGTTCATGGACTGCTGGTGTCACTACTTG] [+] EMBL CD121034 [GTAATTTAGCGACTAGCTGTAGATTTAGTGCAATTATTTTTATATGCGCAACTGTGATCCTGACGTATTTGCAGAATAAACCAATACAAGAAAATATGATTCATCAAGCAAATTAATCCAAGAATCATTTATAAACCTACACATTAATTAACGGATATTAGTATAAATAATGTTACGATCAAGAAAGTCTGCACCTGTCCAGTCTACCAATACCAAAGATGAACTAGCAACTGGTGGTTTGTCATCTGTAGATATTGGCTGGGTGGGACCTATAACTTTACGCAGACGTGCTAAACCGGAATTGGAAAATGAACAACACAAAGATGTATCACTTCGAATATCTATACAAGAAGTTAAAAATCTTTCAGCTAAAGGACGATACTTTTGTGAAATATGTTTGGATCGTACATTATATGCGCGTACAACTAGTAAACTGTCAGATGGAACTGTATTCTGGGGGGAACAATTTGACTTAAACAATTTGCCTATAATATCCATTATGACAATATA ] [+] EMBL CD117489 [ ACTGTCAGATGGAACTGTATTCTGGGGGGAACAATTTGACTTAAACAATTTGCCTATAATATCCATTATGACAATAAATTTATTCAGGCAAGCAACTTCTGTAAAAGACAAACGACAAAGGAACAAAAATCAGAATCAATTTATCGGTTATGTTACTATTCCATTGAACGATGATTCACAACAATGTGAGATACAAAAATGGTTTATAATGCAACCTCCACAAATTAACTCAAATTTAAATTTTCTAGAGAATCTACAAGTTTGTCATCAACAACATCAGCAACAGACAGATACAAATCAAACTCCGTCGATCAATTCTTCAACTGGAGTATCGGGACGACTTCGTAAACATTCTATTCCAGCTTCATGTTTTGGATATTCTAATTCATTTTCAATTATACCCAATTCACAGTATACTACTAATAGTAATAATAAATTAAATGATGATAATGAACTAAAGTATAACCATATGGAACTGTCGAAAAAGAAATGTTCATGGACTGCTGGTGTCACTACTTG] consensusID : consensus_6388#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 313 fasta sequence [ATCATTGGAACAGAATTACCAACTTCACCAAGATCTCGTAGTTCACAAAAAATCAAAATAATCCATTTTATTCAAAACCAAATAAAAATTTAACGAAAAAATTCTGTGAATCAATTAGCAACGTTGAAACCAATATCGAAATACCTTTTCCTAAACAATAACTCAGAATATAATGAACAGTTTCAAAAATGAAAAATCGATCAGTCATTCAGTTAACATTGGATCATTTGTTTTACGCAGACGTGCTAAACCGGAATTGGAAAATGAACAACACATAGATGTATCACTTCGAATATCTAATACAAGAAGTTAA] [+] EMBL CD180145 [ATCATTGGAACAGAATTACCAACTTCACCAAGATCTCGTAGTTCACAAAAAATCAAAATAATCCATTTTATTCAAAACCAAATAAAAATTTAACGAAAAAATTCTGTGAATCAATTAGCAACGTTGAAACCAATATCGAAATACCTTTTCCTAAACAATAACTCAGAATATAATGAACAGTTTCAAAAATGAAAAATCGATCAGTCATTCAGTTAACATTGGATCATTTGTTTTACGCAGACGTGCTAAACCGGAATTGGAAAATGAACAACACATAGATGTATCACTTCGAATATCTAATACAAGAAGTTAA] consensusID : consensus_6388#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence [GAGATCTTGGTGAAGTTGGTAATTCTGTTCCAATGATAGTCTTGACAGGTCTCTGTCTTATAGGTTTCACTGAAGCTTTCGGGATTTCAAGTGATTTACGAGAATTTGAACTAATGCTACGATTTTTTGGAAAGGATTGTGGATTAAGCTGGAGATTAGATATTTCCGAAGTACGGTTAGATTCAC] [+] EMBL CD185480 [GAGATCTTGGTGAAGTTGGTAATTCTGTTCCAATGATAGTCTTGACAGGTCTCTGTCTTATAGGTTTCACTGAAGCTTTCGGGATTTCAAGTGATTTACGAGAATTTGAACTAATGCTACGATTTTTTGGAAAGGATTGTGGATTAAGCTGGAGATTAGATATTTCCGAAGTACGGTTAGATTCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6388#0 GTAATTTAGCGACTAGCTGTAGATTTAGTGCAATTATTTTTATATGCGCAACTGTGATCC 60 consensus_6388#1 --------------------------------ATCATTGGAACA-GAATTACCAACTTCA 27 consensus_6388#2 ------------------------------------------------------------ consensus_6388#0 TGACGTATTTGCAGAATAAACCAATACAAGAAAATATGATTCATCAAGCAAATTAATCCA 120 consensus_6388#1 CCAAGATCTCGTAGTTCACAAAAAATCAAAATAATCCATTTTATTCA--AAACCAAATAA 85 consensus_6388#2 -----------GAGATCTTGGTGAAGTTGGTAATTCTGTTCCAATGA-TAGTCTTGACAG 48 ** * * * * * * * consensus_6388#0 AGAATCATTTATAAA--CCTACACATTAATTAACGGATATTAGTATAAATAATGTTACGA 178 consensus_6388#1 AAATTTAACGAAAAAATTCTGTGAATCAATTAGCA-ACGTTGAAACCAATATCG------ 138 consensus_6388#2 GTCTCTGTCTTATAGGTTTCACTGA--AGCTTTCGGGATTTCAAGTGATTTACG------ 100 * * * * * ** * * * consensus_6388#0 TCAAGAAAGTCTGCACCTGTCCAGT--CTACCAATACCAAAGATGAACTAGCAACTGGTG 236 consensus_6388#1 ----AAATACCTTTTCCTAAACAATAACTCAGAATATAATGAACAGTTTCAAAAATGAAA 194 consensus_6388#2 -----AGAATTTGAACTAATGCTACGATTTTTTGGA-AAGGATTGTGGATTAAGCTGGAG 154 * * * * * * * * ** consensus_6388#0 GTTTGTCATCTGTAGATATTGGCTGGGTGGGACCTATAACTTTACGCAGACGTGCTAAAC 296 consensus_6388#1 AATCG--ATCAGTC-ATTCAGTTAACATTGGATCATTTGTTTTACGCAGACGTGCTAAAC 251 consensus_6388#2 ATTAGATATTTCCGAAGTACGGTTAGATTCAC---------------------------- 186 * * ** * * * consensus_6388#0 CGGAATTGGAAAATGAACAACACAAAGATGTATCACTTCGAATATCTA-TACAAGAAGTT 355 consensus_6388#1 CGGAATTGGAAAATGAACAACACATAGATGTATCACTTCGAATATCTAATACAAGAAGTT 311 consensus_6388#2 ------------------------------------------------------------ consensus_6388#0 AAAAATCTTTCAGCTAAAGGACGATACTTTTGTGAAATATGTTTGGATCGTACATTATAT 415 consensus_6388#1 AA---------------------------------------------------------- 313 consensus_6388#2 ------------------------------------------------------------ consensus_6388#0 GCGCGTACAACTAGTAAACTGTCAGATGGAACTGTATTCTGGGGGGAACAATTTGACTTA 475 consensus_6388#1 ------------------------------------------------------------ consensus_6388#2 ------------------------------------------------------------ consensus_6388#0 AACAATTTGCCTATAATATCCATTATGACAATATATTTATTCAGGCAAGCAACTTCTGTA 535 consensus_6388#1 ------------------------------------------------------------ consensus_6388#2 ------------------------------------------------------------ consensus_6388#0 AAAGACAAACGACAAAGGAACAAAAATCAGAATCAATTTATCGGTTATGTTACTATTCCA 595 consensus_6388#1 ------------------------------------------------------------ consensus_6388#2 ------------------------------------------------------------ consensus_6388#0 TTGAACGATGATTCACAACAATGTGAGATACAAAAATGGTTTATAATGCAACCTCCACAA 655 consensus_6388#1 ------------------------------------------------------------ consensus_6388#2 ------------------------------------------------------------ consensus_6388#0 ATTAACTCAAATTTAAATTTTCTAGAGAATCTACAAGTTTGTCATCAACAACATCAGCAA 715 consensus_6388#1 ------------------------------------------------------------ consensus_6388#2 ------------------------------------------------------------ consensus_6388#0 CAGACAGATACAAATCAAACTCCGTCGATCAATTCTTCAACTGGAGTATCGGGACGACTT 775 consensus_6388#1 ------------------------------------------------------------ consensus_6388#2 ------------------------------------------------------------ consensus_6388#0 CGTAAACATTCTATTCCAGCTTCATGTTTTGGATATTCTAATTCATTTTCAATTATACCC 835 consensus_6388#1 ------------------------------------------------------------ consensus_6388#2 ------------------------------------------------------------ consensus_6388#0 AATTCACAGTATACTACTAATAGTAATAATAAATTAAATGATGATAATGAACTAAAGTAT 895 consensus_6388#1 ------------------------------------------------------------ consensus_6388#2 ------------------------------------------------------------ consensus_6388#0 AACCATATGGAACTGTCGAAAAAGAAATGTTCATGGACTGCTGGTGTCACTACTTG 951 consensus_6388#1 -------------------------------------------------------- consensus_6388#2 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||