These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6398#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [GGTTGTATTTATGGCACATTTTAATTCATAAACCCCAATCTGTACTTATTAGGTTCTTTAAATCTATGAAATTCGCTTTCAAGAGGAATCGGAATGCCACATTGATGAGATGGGTTCCTAACACACCAGTGTAACTTCTGATATCAACTCTCTCAGGTTTGTTACGTCTTAGTTTTTGGCGGACTCATTGTACGAATTACTTTATTAAGCGTGCACTTGTACGTATGTATGCTTATTTTCGTCTGCATGCCCGTTGTAGGACAATACAGTAGATCTTATACTCCAAAATCACTACATAAAAACGGTTTTTTGTGCGCGATTTCCACCATCTATACACAAAGTTCTTATTGGAAATCACATAATCTTTAGAGAGGGGATAAATTCCAAAATTCAAATTCGTCACTGGGTTTCGAAAACTAAAAGACTGATATAATAAGTGGTTTGTACAATAATGAGCTCTAAATCCAAAATAATGCAATATCCTTGATTTCCAGGTGCTTTTTTAAAATCTCGTTTTT] [+] EMBL BF936654 [GGTTGTATTTATGGCACATTTTAATTCATAAACCCCAATCTGTACTTATTAGGTTCTTTAAATCTATGAAATTCGCTTTCAAGAGGAATCGGAATGCCACATTGATGAGATGGGTTCCTAACACACCAGTGTAACTTCTGATATCAACTCTCTCAGGTTTGTTACGTCTTAGTTTTTGGCGGACTCATTGTACGAATTACTTTATTAAGCGTGCACTTGTACGTATGTATGCTTATTTTCGTCTGCATGCCCGTTGTAGGACAATACAGTAGATCTTATACTCCAAAATCACTACATAAAAACGGTTTTTTGTGCGCGATTTCCACCATCTATACACAAAGTTCTTATTGGAAATCACATAATCTTTAGAGAGGGGATAAATTCCAAAATTCAAATTCGTCACTGGGTTTCGAAAACTAAAAGACTGATATAATAAGTGGTTTGTACAATAATGAGCTCTAAATCCAAAATAATGCAATATCCTTGATTTCCAGGTGCTTTTTTAAAATCTCGTTTTT] consensusID : consensus_6398#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 450 fasta sequence [GGAGACTCGGAGATGGCGGCTAACTTTAAATGGGTGAGAAGCTTAACTCGCTTGATTGGAGTTTTGCATTGAATGTGAGTGCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGCTGTGGGATGAACCAAACGTTCGGTTAAGGTGCCTAACACGACGCTCATGAGATACCACAAAAGGTGTTGGTTGGTCTAAACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGACCGTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTATGCATGGAGTGACGGCAACGAGTAGGAGGGTCGCTGTGGCTAGCGGGAAGCCTCAGGCATGGAGTGACGGCAACGAGTAGGAGGGTC] [+] EMBL BG932144 [GGAGACTCGGAGATGGCGGCTAACTTTAAATGGGTGAGAAGCTTAACTCGCTTGATTGGAGTTTTGCATTGAATGTGAGTGCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGCTGTGGGATGAACCAAACGTTCGGTTAAGGTGCCTAACACGACGCTCATGAGATACCACAAAAGGTGTTGGTTGGTCTAAACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGACCGTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTATGCATGGAGTGACGGCAACGAGTAGGAGGGTCGCTGTGGCTAGCGGGAAGC ] [+] EMBL CD088860 [ GTCTAGGCATGGAGTGACGGCAACGAGTAGGAGGGTCGCTGTGGCTAGCGGGAAGCCTCAGGCATGGAGTGACGGCAACGAGTAGGAGGGTC] consensusID : consensus_6398#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence [TATGGATTGTGATGGACGGGGGCTCCTTTAAATGGGTGAGAAGCTTAACTCGCTTGATTGGAGTTTTGCATTGAATGTGAGTGCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGCTGTGGGATGAACCAAACGTTCGGTTAAGGTGCCTAACACGACGCTCATGAGATACCACAAAAGGTGTTGGTTGGTCTAAACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTTACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTTGAGCGTTGGACCTATACCGGACCGTTGTTGTTA] [+] EMBL BG930438 [TATGGATTGTGATGGACGGGGGCTCCTTTAAATGGGTGAGAAGCTTAACTCGCTTGATTGGAGTTTTGCATTGAATGTGAGTGCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGCTGTGGGATGAACCAAACGTTCGGTTAAGGTGCCTAACACGACGCTCATGAGATACCACAAAAGGTGTTGGTTGGTCTAAACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTTACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTTGAGCGTTGGACCTATACCGGACCGTTGTTGTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6398#1 -----------------------------GGAGACTCGGAGATGGCGGCTAA---CTTTA 28 consensus_6398#2 --------------------------TATGGATTGTGATGGACGGGGGCTC----CTTTA 30 consensus_6398#0 GGTTGTATTTATGGCACATTTTAATTCATAAACCCCAATCTGTACTTATTAGGTTCTTTA 60 * * ***** consensus_6398#1 AATGGGTGAGAAGC-TTAACTCGCTTGATTGGAGTTTTGCATTGA--ATGTGAGTGCCAA 85 consensus_6398#2 AATGGGTGAGAAGC-TTAACTCGCTTGATTGGAGTTTTGCATTGA--ATGTGAGTGCCAA 87 consensus_6398#0 AATCTATGAAATTCGCTTTCAAGAGGAATCGGAATGCCACATTGATGAGATGGGTTCCTA 120 *** *** * * * * * ** *** * ****** * ** ** ** * consensus_6398#1 GTGGGCCATTTTTGGTAAGCAGAACTGGCGCTGTGGGATGAACCAAACGTTCGGTTAAGG 145 consensus_6398#2 GTGGGCCATTTTTGGTAAGCAGAACTGGCGCTGTGGGATGAACCAAACGTTCGGTTAAGG 147 consensus_6398#0 ACACACCAGTGTAACTTC-TGATATCAACTCTCTCAGGTTTGTTACGTCTTAGTTTTTGG 179 *** * * * * * ** * * * * ** * ** ** consensus_6398#1 TGCCTAACACGACGCTCATGAGATACCACAAAAGGTGTTGGTTGGTCTAAACAGCAGGAC 205 consensus_6398#2 TGCCTAACACGACGCTCATGAGATACCACAAAAGGTGTTGGTTGGTCTAAACAGCAGGAC 207 consensus_6398#0 CG---GACTCATTGT--ACGAATTACTTTATTAAGCGTGCACTTGTACGTAT-GTATGCT 233 * ** * * * ** *** * * * ** * ** * * * * consensus_6398#1 GGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAAC 265 consensus_6398#2 GGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTTACCTGCCGAATCAAC 267 consensus_6398#0 TATTTTCGTCTGCAT-GCCCGTTGTAGGACAATACAGTAGATCTTATACTCCAAAATCAC 292 * * * * * * * * * * * ** * ** ** ** consensus_6398#1 CAGCCCTGAAAATGGATGGC-GCTCGAGCGTTGGACC-----TATACCGGACCGTTGCTG 319 consensus_6398#2 CAGCCCTGAAAATGGATGGC-GCTTGAGCGTTGGACC-----TATACCGGACCGTTGTTG 321 consensus_6398#0 TA--CATAAAAACGGTTTTTTGTGCGCGATTTCCACCATCTATACACAAAGTTCTTATTG 350 * * * **** ** * * * * ** *** ** ** ** ** consensus_6398#1 TAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTATGCATGGAGTGACGGC 379 consensus_6398#2 TTA--------------------------------------------------------- 324 consensus_6398#0 GAAATCACATAATCTTTAGAGAGGGGATAAATTCCAAAATTCAAATTCGTCACTGGGTTT 410 * consensus_6398#1 AACGAGTAGGAGGGTCGCTGTGGCTAGCGGGAAGCCTCAGGCATGGAGTGACGGCAACGA 439 consensus_6398#2 ------------------------------------------------------------ consensus_6398#0 CGAAAACTAAAAGACTGATATAATAAGTGGTTTGTACAATAATGAGCTCTAAATCCAAAA 470 consensus_6398#1 GTAGGAGGGTC------------------------------------- 450 consensus_6398#2 ------------------------------------------------ consensus_6398#0 TAATGCAATATCCTTGATTTCCAGGTGCTTTTTTAAAATCTCGTTTTT 518 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||