cluster # 6423

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Schistosoma mansoni
cluster # 6423 cluster # 6423 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6423#0 length = 548 sequences # 3

consensus_6423#1 length = 175 sequences # 1

consensusID : consensus_6423#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 548
fasta sequence

                              [GCCTTTTGAAAATGCTGGGATATGTGTACATCATTGGGAATTCAGTGATGGTTCACCTCCACCCGAGAATATTCTCACAGAATGGTTCACTCTCCTCAGAAATCGATTTTATGGGGAAAATAATACCGCTCATGTTGATCAAAACCACCTGGTACCTGGGCCAATCGCTGTTCATTGTATAGCTGGATATGGAAGGGCTCCGGTCCTGGTAGCTGTTGCGTTAATGGAACTTGGAATGTCCAGCGAAGATGCAATAGAATTGATTCGCAGTAAACGTAAAGGTGCGTTTAACGATCGCCAAATTCATTATCTCACTAACTATCATGCCCATTCTCGTTTACGTCGTCACAATCATCGTTGTTTTATTGTATAATCT-TATGTATTCATTCAAAGTGTACATAATATGTACACATCCATTTATCACCATTTCTAATTCCTTGTGTAACTGCTAACATACAGCATACAATGATATTAGTAATGTATTTGTTTGTGTACTGATGATATAATTTTTGTTGTCTTATTTCTTAGAGGTACTATTTCCTTTATGT]

[+] EMBL CD088328             [GCCTTTTGAAAATGCTGGGATATGTGTACATCATTGGGAATTCAGTGATGGTTCACCTCCACCCGAGAATATTCTCACAGAATGGTTCACTCTCCTCAGAAATCGATTTTATGGGGAAAATAATACCGCTCATGTTGATCAAAACCACCTGGTACCTGGGCCAATCGCTGTTCATTGTATAGCTGGATATGGAAGGGCTCCGGTCCTGGTAGCTGTTGCGTTAATGGAACTTGGAATGTCCAGTGAAGATGCAATAGAATTGATTCGCAGTAAACGTAAAGGTGCGTTTAACGATCGCCAAATTCATTATCTCACTAACTATCATGCCCATTCTCGTTTACGTCGTCACAATCATCGTTGTTTTATTGTATAATCT TATGTATTCATTCAAAGTGTACATAATATGTACACATCCATTTATCACCATTTCTAATTCCTTGTGTAACTGCTAACATACAGCATACA                                                                                   ]
[-] EMBL CD068071             [                                                                                                                                                                                                                            TTAATGGAACTTGGAATGTCCAGCGAAGATGCAATAGAAGTGATTCGCAGTAAACGTAAAGGTGCGTTTAACGATCGCCAAATTCATTATCTCACTAACTATCATGCCCATTCGCGTGTACGTCGTCACAATCATCGTTGTTTTATTGTATATTCTATATATACTCATTCAAAGTGTACATAATATGTACACATCCATTTATCACCATTTCTAATTCCTTGTGTAACTGCTAACATACAGCATACAATGATATTAGTAATGTATTTGTTTGTGTACTGATGATATAATTTTTGTTGTCTTATTTCTTAGAGGTACTATTTCCTTTATGT]
[+] EMBL CD158397             [                                                                                                                                                                                                                            TTAATGGAACTTGGAATGTCCAGCGAAGATGCAATAGAGTTGATTCGCAGTAAACGTAAAGGTGCGTTTAACGATCGCCAAATTCATTATCTCACTAACTATCATGCCCATTCTCGTTTATGTCGTCACAATCATCGTTGTTTTATTGTATAATCT TATGTATTCATTCAAAGTGTACATAATATGTACACATCCATTTATCACCATTTCTAATTCCTTGTGTAACTGCTAACATACAGCATACAATGATATTAGTAATGTATTTGTTTGTGTACTGATGATATAATTTTTGTTGTCTTATTTCTTAGAGGTACTATTTCCTTTATG ]




>consensus_6423#0
GCCTTTTGAAAATGCTGGGATATGTGTACATCATTGGGAATTCAGTGATGGTTCACCTCC
ACCCGAGAATATTCTCACAGAATGGTTCACTCTCCTCAGAAATCGATTTTATGGGGAAAA
TAATACCGCTCATGTTGATCAAAACCACCTGGTACCTGGGCCAATCGCTGTTCATTGTAT
AGCTGGATATGGAAGGGCTCCGGTCCTGGTAGCTGTTGCGTTAATGGAACTTGGAATGTC
CAGCGAAGATGCAATAGAATTGATTCGCAGTAAACGTAAAGGTGCGTTTAACGATCGCCA
AATTCATTATCTCACTAACTATCATGCCCATTCTCGTTTACGTCGTCACAATCATCGTTG
TTTTATTGTATAATCTTATGTATTCATTCAAAGTGTACATAATATGTACACATCCATTTA
TCACCATTTCTAATTCCTTGTGTAACTGCTAACATACAGCATACAATGATATTAGTAATG
TATTTGTTTGTGTACTGATGATATAATTTTTGTTGTCTTATTTCTTAGAGGTACTATTTC
CTTTATGT

consensusID : consensus_6423#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 175
fasta sequence

                              [GGGAAACTGACCGAACGGTCATGGTCAAAATCCAAAGAACACAAAAAAGATAAATCGCACCATAAGGAGAAGCACAAAGACGGTCATAGTCATCACAGATCGGTCAAAACTCTGCTGCTGATCGCTCTCATCATCGATCAGCATAAAGAGTAATGCATGATATAGTAGAGCGTTC]

[+] EMBL AA917142             [GGGAAACTGACCGAACGGTCATGGTCAAAATCCAAAGAACACAAAAAAGATAAATCGCACCATAAGGAGAAGCACAAAGACGGTCATAGTCATCACAGATCGGTCAAAACTCTGCTGCTGATCGCTCTCATCATCGATCAGCATAAAGAGTAATGCATGATATAGTAGAGCGTTC]




>consensus_6423#1
GGGAAACTGACCGAACGGTCATGGTCAAAATCCAAAGAACACAAAAAAGATAAATCGCAC
CATAAGGAGAAGCACAAAGACGGTCATAGTCATCACAGATCGGTCAAAACTCTGCTGCTG
ATCGCTCTCATCATCGATCAGCATAAAGAGTAATGCATGATATAGTAGAGCGTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6423#0      GCCTTTTGAAAATGCTGGGATATGTGTACATCATTGGGAATTCAGTGATGGTTCACCTCC 60
consensus_6423#1      ------------------------------------------------------------
                                                                                  

consensus_6423#0      ACCCGAGAATATTCTCACAGAATGGTTCACTCTCCTCAGAAATCGATTTTATGGGGAAAA 120
consensus_6423#1      ------------------------------------------------------------
                                                                                  

consensus_6423#0      TAATACCGCTCATGTTGATCAAAACCACCTGGTACCTGGGCCAATCGCTGTTCATTGTAT 180
consensus_6423#1      ------------------------------------------------------------
                                                                                  

consensus_6423#0      AGCTGGATATGGAAGGGCTCCGGTCCTGGTAGCTGTTGCGTTAATGGAACTTGGAATGTC 240
consensus_6423#1      --------------------------GGGAAACTGACCGAACGGTCATGGTCAAAAT--C 32
                                                 ** * ***         *     *   ***  *

consensus_6423#0      CAGCGAAGATGCAATAGAATTGATTCGCAGTAAACGTAAAGGTGCGTTTAACGATCGCCA 300
consensus_6423#1      CAAAGAACA--CAAAAAAGATAAATCGCACCATAAGGAGAAGCAC----AAAGACGGTCA 86
                      **  *** *  *** * *  * * *****  * * * * * *  *    ** **  * **

consensus_6423#0      AATTCATTATC--TCACTAACTATCATGCCCATTCTCGTTTACGTCGTCACAATCATCGT 358
consensus_6423#1      TAGTCATCACAGATCGGTCAAAACTCTGCTGCTGATCGCTCTCATCATCG--ATCAGCAT 144
                       * **** *    **  * *  *   ***   *  *** *  * ** **   **** * *

consensus_6423#0      TGTTT-TATTGTATAATCTTATGTATTCATTCAAAGTGTACATAATATGTACACATCCAT 417
consensus_6423#1      AAAGAGTAATGCATGATATAGTAGAG-CGTTC---------------------------- 175
                            ** ** ** ** *  *  *  * ***                            

consensus_6423#0      TTATCACCATTTCTAATTCCTTGTGTAACTGCTAACATACAGCATACAATGATATTAGTA 477
consensus_6423#1      ------------------------------------------------------------
                                                                                  

consensus_6423#0      ATGTATTTGTTTGTGTACTGATGATATAATTTTTGTTGTCTTATTTCTTAGAGGTACTAT 537
consensus_6423#1      ------------------------------------------------------------
                                                                                  

consensus_6423#0      TTCCTTTATGT 548
consensus_6423#1      -----------