These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6425#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 572 fasta sequence [CAGCTGCTTACAGCCTACGAATTATCTTCTTTGCTCTAATATCAAAACCTCGCTACCTACCCCTAATTACACTAAACGAAAATAACCCCAAACTTATAAACCCCATTAAACGCTTAGCCATAGGAAGTATATTTGCAGGATTTATCATGACATACAACATCCCAACTACATCTATTCAAGTAATAACTATACCCTGATACTTAAAAACAACAGCAATCTTAGTCACTCTAATAGGATTCACTATCGCTTTAGAACAAAACAACCTAACATATAATCTAAAATCAAATACATCAACACTAACAAACTTATTCTCCACATCACTAGGGTATTTCACCCTTATCTTCCACCGCTTATTACCCAAAAAATTCCTAACTATAAGCTTTAACACACCCCTAAACATACTAGACTTAACATGACTGGAAACTTCTATCCCCAAAGCCATCTCATATATAAATCTCACAGCCTCCCAAATCCTTGCCAACCAAAAAGGTTTAATTAAACTTTACTTCATATCCTTCCTCATTACTCTCCTTTCGATTCCTATTTTACTAATTAGTTTCCACGAGTAATCT] [+] EMBL CD168705 [CAGCTGCTTACAGCCTACGAATTATCTTCTTTGCTCTAATATCAAAACCTCGCTACCTACCCCTAATTACACTAAACGAAAATAACCCCAAACTTATAAACCCCATTAAACGCTTAGCCATAGGAAGTATATTTGCAGGATTTATCATGACATACAACATCCCAACTACATCTATTCAAGTAATAACTATACCCTGATACTTAAAAACAACAGCAATCTTAGTCACTCTAATAGGATTCACTATCGCTTTAGAACAAAACAACCTAACATATAATCTAAAATCAAATACATCAACACTAACAAACTTATTCTCCACATCACTAGGGTATTTCACCCTTATCTTCCACCGCTTATTACCCAAAAAATTCCTAACTATAAGCTTTAACACACCCCTAAACATACTAGACTTAACATGACTGGAAACTTCTATCCCCAAAGCCATCTCATATATAAATCTCACAGCCTCCCAAATCCTTGCCAACCAAAAAGGTTTAATTAAACTTTACTTCATATCCTTCCTCATTACTCTCCTTTCGATTCCTATTTTACTAATTAGTTTCCACGAGTAATCT] [-] EMBL AI559054 [ GACTGGAAACTTCTATCCCCAAAGCCATCTCATATATAAATCTCACAGCCTCCCAAATCCTTGCCAACCAAAAAGGTTTAATGAAACTTTACTTCATATCCTTCCTCATTACTCTCCTTTCGATTCCTATTTTACTAATTAGTTTCCACGAGTAAT ] [+] EMBL AI413082 [ AACTTCTATCCCCAAAGCCATCTCATATATAAATCTCACAGCCTCCCAAATCCTTGCCAACCAAAAAGGTTTAATTAAACTTTACTTCATATCCTTCCTCATTACTCTCCTTTCGATTCCTATTTTACTAATTAGTTTCCACGAGTAATCT] consensusID : consensus_6425#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 209 fasta sequence [TTGGAAGGGAAACATAAAAGATACAACATGACCATTGACTCCAGTTGTACTTTAAATTTTCTTTTTTAAAAAAAAGATTTAGGACCGGGCAGCTTTAACACACCCCTAAACATACTAGACTTAACATGACTGGAAACTTCTATCCCCAAAGCCATTTCATATATAAATCTCACAGCCTCCCAAATCCTTGCCAACCAAAAAGGTTTAAT] [-] EMBL AW587560 [TTGGAAGGGAAACATAAAAGATACAACATGACCATTGACTCCAGTTGTACTTTAAATTTTCTTTTTTAAAAAAAAGATTTAGGACCGGGCAGCTTTAACACACCCCTAAACATACTAGACTTAACATGACTGGAAACTTCTATCCCCAAAGCCATTTCATATATAAATCTCACAGCCTCCCAAATCCTTGCCAACCAAAAAGGTTTAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6425#0 CAGCTGCTTACAGCCTACGAATTATCTTCTTTGCTCTAATATCAAAACCTCGCTACCTAC 60 consensus_6425#1 ------------------------------------------------------------ consensus_6425#0 CCCTAATTACACTAAACGAAAATAACCCCAAACTTATAAACCCCATTAAACGCTTAGCCA 120 consensus_6425#1 ------------------------------------------------------------ consensus_6425#0 TAGGAAGTATATTTGCAGGATTTATCATGACATACAACATCCCAACTACATCTATTCAAG 180 consensus_6425#1 ------------------------------------------------------------ consensus_6425#0 TAATAACTATACCCTGATACTTAAAAACAACAGCAATCTTAGTCACTCTAATAGGATTCA 240 consensus_6425#1 ------------------------------------------------------------ consensus_6425#0 CTATCGCTTTAGAACAAAACAACCTAACATATAATCTAAAATCAAATACATCAACACTAA 300 consensus_6425#1 -----------------------------------TTGGAAGGGAA-ACATAAAAGATA- 23 * ** ** **** ** ** consensus_6425#0 CAAACTTATTCTCCACATCACTAGGGTATTTCACCCTTATCTTCCACCGCTTATTACCCA 360 consensus_6425#1 CAACATGACCATTGACTCCA-------GTTGTACTTTAAATTTTC----TTTTTTAAAAA 72 *** * * * ** ** ** ** * * ** * ** *** * consensus_6425#0 AAAAATTCCTAACTATA-AGCTTTAACACACCCCTAAACATACTAGACTTAACATGACTG 419 consensus_6425#1 AAAGATTTAGGACCGGGCAGCTTTAACACACCCCTAAACATACTAGACTTAACATGACTG 132 *** *** ** ****************************************** consensus_6425#0 GAAACTTCTATCCCCAAAGCCATCTCATATATAAATCTCACAGCCTCCCAAATCCTTGCC 479 consensus_6425#1 GAAACTTCTATCCCCAAAGCCATTTCATATATAAATCTCACAGCCTCCCAAATCCTTGCC 192 *********************** ************************************ consensus_6425#0 AACCAAAAAGGTTTAATTAAACTTTACTTCATATCCTTCCTCATTACTCTCCTTTCGATT 539 consensus_6425#1 AACCAAAAAGGTTTAAT------------------------------------------- 209 ***************** consensus_6425#0 CCTATTTTACTAATTAGTTTCCACGAGTAATCT 572 consensus_6425#1 --------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||