These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6430#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 455 fasta sequence [ATTAAAGTTAGTTGATGTTCTAATTCAGATAAAGTGTATTTTGTATGGTTGTGTGTATGTGTTTGCGTATAGTCTGTTCGCTTACCTATCTAGTCGTTGTTGTATTTCACTTCTTTGAATTAAATCTCTCCCTTGTTCTACAATCTTTTTCTTTTTTCAGACAATCAGTGTTTGTCTTAATTTACTCTTTTGTGGCTTAGCGGTATTTCTTCTTCCAGTTACAATATTGCCTTATTATTATTATTATTATTACTAAGGGGTCATCACATTAGTTACTTTCAACTTTTTATTTTGGCTATACCAGGAATTTTTTTCGTTCTAAATCTTTTTTCAATTTTCAATAAATATTACAACGGTTAAGTCTTGTTGCAACGTCATTAGCTGGCCTTTCTACGACTATATCATTCGAGCATAGTTGTGTGTGAGTGTGTGAGGGTTGTTTGTAACTTTTGAGT] [+] EMBL AI764943 [ATTAAAGTTAGTTGATGTTCTAATTCAGATAAAGTGTATTTTGTATGGTTGTGTGTATGTGTTTGCGTATAGTCTGTTCGCTTACCTATCTAGTCGTTGTTGTATTTCACTTCTTTGAATTAAATCTCTCCCTTGTTCTACAATCTTTTTCTTTTTTCAGACAATCAGTGTTTGTCTTAATTTACTCTTTTGTGGCTTAGCGGTATTTCTTCTTCCAGTTACAATATTGCCTTATTATTATTATTATTATTACTAAGGGGTCATCACATTAGTTACTTTCAACTTTTTATTTTGGCTATACCAGGAATTTTTTTCGTTCTAAATCTTTTTTCAATTTTCAATAAATATTACAACGGTTAAGTCTTGTTGCAACGTCATTAGCTGGCCTTTCTACGACTATATCATTCGAGCATAGTTGTGTGTGAGTGTGTGAGGGTTGTTTGTAACTTTTGAGT] [-] EMBL CD145803 [ TTTCACTTCTNTGAATTAAATCTCTCCCTTGTTCTACAATCTTTTTCTTTTTTCAGAC ATCAGTGTTTGTCTTAATTTACTCTTTTGT GCTTAGC GTATTTCTTCTTCCAGTTACAATATT CC TTATTATTATTATTATTACTAA TGGTCATCACATTAGTTACTTTCAACTTTTTATTTTGGCTATACCAGGAATTTATTTCGTTCTAAATCTTTTTTCAATTTTCATTAATTA ] consensusID : consensus_6430#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 234 fasta sequence [ATCTTATTATTTCACTATAAAGTTTCATTGTCTTTATTCAGTTCATCTTTATAATTGAATGTGAGCATTGACAATATTTCAATATGATATGCATAATTAATATTACTCATGAATACAATTTACTACAAATAAT-AAAGACATTTAACTAACATTCAATTAAAATAATGAATT-AAGTTAGTTTATGTTCATAATTCAGATAAAGTGTATTTTGTATGGT-GTGTGCATGTGTTCGTG] [+] EMBL AI390093 [ATCTTATTATTTCACTATAAAGTTTCATTGTCTTTATTCAGTTCATCTTTATAATTGAATGTGAGCATTGACAATATTTCAATATGATATGCATAATTAATATTACTCATGAATACAATTTACTACAAATAAT AAAGACATTTAACTAACATTCAATTAAAATAATGAATT AAGTTAGTTTATGTTCATAATTCAGATAAAGTGTATTTTGTATGGT GTGTGCATGTG ] [+] EMBL SMAA69227 [ TTTCTCCAAATAATAAAAGACATTTAACTAACATTCAATTAAAATAATGAATTAAAGTTAGTTTATGTTC TAATTCAGATAAAGTGTATTTTGTATGGTGGTGTGTATcgtttcgtg] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6430#0 ATTAAAGTTAGTTGATGTTCTAATTCAGATAAAGTGTATTTTGTATGGTTGTGTGTATGT 60 consensus_6430#1 ------------------------------------------------------------ consensus_6430#0 GTTTGCGTATAGTCTGTTCGCTTACCTATCTAGTCGTTGTTGTATTTCACTTCTTTGAAT 120 consensus_6430#1 ------------------------------------------------------------ consensus_6430#0 TAAATCTCTCCCTTGTTCTACAATCTTTTTCTTTTTTCAGACAATCAGTGTTTGTCTTAA 180 consensus_6430#1 ------------------------------------------------------------ consensus_6430#0 TTTACTCTTTTGTGGCTTAGCGGTATTTCTTCTTCCAGTTACAATATTGCCTTATTATTA 240 consensus_6430#1 ------------------------ATCTTATTATTTCACTATAAAGTTTCATTGTCTTTA 36 ** * * * ** ** ** * ** * *** consensus_6430#0 TTATTATTATTACTAAGGGGTCATCACAT-TAGTTACTTTCAACTTTTTATTTTGGC-TA 298 consensus_6430#1 TTCAGTTCATCTTTA-----TAATTGAATGTGAGCATTGACAATATTTCAATATGATATG 91 ** * ** ** * ** ** * * * *** *** * * ** * consensus_6430#0 TACCAGGAATTTTTTTCGTT--CTAAATCTTTTTTCAATTTTCAATAAATATTACAACGG 356 consensus_6430#1 CATAATTAATATTACTCATGAATACAATTTACTACAAATAATAAAGACATTTAACTAACA 151 * * *** ** ** * *** * * *** * ** * ** * ** * consensus_6430#0 TTAAGTCTTGTTGCAACGTCATTAGCTGGCCTTTCTACGACTATATCATTCGAGCATAGT 416 consensus_6430#1 TTCAAT--TAAAATAATGAATTAAGTTAGTTTATGTTC-ATAATTCAGATAAAGTGTA-T 207 ** * * * ** * * ** * * * * * * * ** * ** ** * consensus_6430#0 TGTGTGTGAGTGTGTGAGGGTTGTTTGTAACTTTTGAGT 455 consensus_6430#1 TTTGTATG-GTGTGTGCATGT-GTTCGTG---------- 234 * *** ** ******* ** *** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||