cluster # 6444

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Schistosoma mansoni
cluster # 6444 cluster # 6444 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6444#0 length = 429 sequences # 3

consensus_6444#1 length = 281 sequences # 1

consensusID : consensus_6444#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 429
fasta sequence

                              [AAGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACATTCAACATTCTTTAATCATCCAAATTGGCATAGTTGGAATGTGTTTGAAATTGATAAACTAATGTTACAATAACAAATCAATATTGAGAATATTAGTACTATGTCAACGAAACAAAAATAATTGTAGAAAAAAATAGATGTGGCGAAATACATTTGATGATGAAAACATTTGAACAAAAAACTATTTCATTTATCAAAAATATGCGTCTAAATCACAAGTAAAAAACAGATATTGAAACTGTTTTTACATAAGTTGTGCAGACAATTTTGATTTTCAGAAATCAATTTTTAAAAAAACATGAAAACGTAAAAAAAAAACAAATATGTTTTTTTCAAGTGATCAAGTATT]

[+] EMBL AI068028             [AAGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACATTCAACATTCTTTAATCATCCAAATTGGCATAGTTGGAATGTGTTTGAAATTGATAAACTAATGTTACAATAACAAATCAATATTGAGAATATTAGTACTATGTCAACGAAACAAAAATAATTGTAGAAAAAAATAGATGTGGCGAAATACATTTGATGATGAAAACATTTGAACAAAAAACTATTTCATTTATCAAAAATATGCGTCTAAATCACAAGTAAAAAACAGATATTGAAACTGTTTTTACATAAGTTGTGCAGACAATTTTGATTTTCAGAAATCAATTTTTAAAAAAACATGAAAACGTAAAAAAAAAACAAATATGTTTTTTTCAAGTGATCAAGTATT]
[+] EMBL AI068033             [AAGCAGCTGCATGGCATG  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACATTCAACATTCTTTAATCATCCAAATTGGTATACTTGGAATGTGTTTGAAATTGATAAACTAATGTTACAATAACAAATCAATATTGAGAATATTACTACTATGTCAACGAAACAAAAATAATTGTAAAAAAAACTACATGTGGCGAAATACA                                                                                                                                                                                                     ]
[+] EMBL CD119338             [                                                                                                                                                                                                                                                                                                           TAAAAAATAGATATTGAAACTGTTTTTACATAAGTTGTGCAGACAATTTTGATTTTCAGAAATCAATTTTT AAAAAACATGAAAACGTAAAAAAAAAACAAATATGTTTTTTTAAAGgg          ]




>consensus_6444#0
AAGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTGAGACATTCAACATTCTTTAATCATCCAAATTGGCATAGTTGGAAT
GTGTTTGAAATTGATAAACTAATGTTACAATAACAAATCAATATTGAGAATATTAGTACT
ATGTCAACGAAACAAAAATAATTGTAGAAAAAAATAGATGTGGCGAAATACATTTGATGA
TGAAAACATTTGAACAAAAAACTATTTCATTTATCAAAAATATGCGTCTAAATCACAAGT
AAAAAACAGATATTGAAACTGTTTTTACATAAGTTGTGCAGACAATTTTGATTTTCAGAA
ATCAATTTTTAAAAAAACATGAAAACGTAAAAAAAAAACAAATATGTTTTTTTCAAGTGA
TCAAGTATT

consensusID : consensus_6444#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence

                              [AGTACTATGTCNACCGNACCCGNAATNATTGTAGNANAAGATAGATGTGNCGANANACANTTGATGATGNNAACATNTGNACCGAAAACTATTTCANTTATCCANAAAANANANCTAAATCANCCANTNAAGNGAAGATATTGAAACTGTTTTTACATAAATTGTNCAGACAATTTTGATTTTCAGAAATCAATTTTTANACANACATGAANACGTANTAAAGAAAANCNAAAATCNNCCCNNTNCAANCTCNTTCCGTATTCCNGGNANCCCCGNGGGAT]

[-] EMBL SM396                [AGTACTATGTCNACCGNACCCGNAATNATTGTAGNANAAGATAGATGTGNCGANANACANTTGATGATGNNAACATNTGNACCGAAAACTATTTCANTTATCCANAAAANANANCTAAATCANCCANTNAAGNGAAGATATTGAAACTGTTTTTACATAAATTGTNCAGACAATTTTGATTTTCAGAAATCAATTTTTANACANACATGAANACGTANTAAAGAAAANCNAAAATCNNCCCNNTNCAANCTCNTTCCGTATTCCNGGNANCCCCGNGGGAT]




>consensus_6444#1
AGTACTATGTCNACCGNACCCGNAATNATTGTAGNANAAGATAGATGTGNCGANANACAN
TTGATGATGNNAACATNTGNACCGAAAACTATTTCANTTATCCANAAAANANANCTAAAT
CANCCANTNAAGNGAAGATATTGAAACTGTTTTTACATAAATTGTNCAGACAATTTTGAT
TTTCAGAAATCAATTTTTANACANACATGAANACGTANTAAAGAAAANCNAAAATCNNCC
CNNTNCAANCTCNTTCCGTATTCCNGGNANCCCCGNGGGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6444#0      AAGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_6444#1      ------------------------------------------------------------
                                                                                  

consensus_6444#0      TTTTTTTTTTTTTTGAGACATTCAACATTCTTTAATCATCCAAATTGGCATAGTTGGAAT 120
consensus_6444#1      ------------------------------------------------------------
                                                                                  

consensus_6444#0      GTGTTTGAAATTGATAAACTAATGTTACAATAACAAATCAATATTGAGAATATTAGTACT 180
consensus_6444#1      ------------------------------------------------------AGTACT 6
                                                                            ******

consensus_6444#0      ATGTCAAC-GAAACAAAAATAATTGTAGAAAAAAATAGATGTGGCGAAATACATTTGATG 239
consensus_6444#1      ATGTCNACCGNACCCGNAATNATTGTAGNANAAGATAGATGTGNCGANANACANTTGATG 66
                      ***** ** * * *   *** ******* * ** ********* *** * *** ******

consensus_6444#0      ATGAAAACATTTGAACAAAAAACTATTTCATTTATCAAAAATATGCGTCTAAATCACA-A 298
consensus_6444#1      ATGNNAACATNTGNACCGAAAACTATTTCANTTATCCANAAAANANANCTAAATCANCCA 126
                      ***  ***** ** **  ************ ***** * ** *     ********   *

consensus_6444#0      GTAAAAAACAGATATTGAAACTGTTTTTACATAAGTTGTGCAGACAATTTTGATTTTCAG 358
consensus_6444#1      NTNAAGNGAAGATATTGAAACTGTTTTTACATAAATTGTNCAGACAATTTTGATTTTCAG 186
                       * **    ************************* **** ********************

consensus_6444#0      AAATCAATTTTTAAAAAAACATGAAAACGTAA--AAAAAAAACAAATATGTTT--TTTTC 414
consensus_6444#1      AAATCAATTTTTANACANACATGAANACGTANTAAAGAAAANCNAAAATCNNCCCNNTNC 246
                      ************* * * ******* *****   ** **** * ** **        * *

consensus_6444#0      AAG-TGATCAAGTATT------------------- 429
consensus_6444#1      AANCTCNTTCCGTATTCCNGGNANCCCCGNGGGAT 281
                      **  *  *   *****