These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6445#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1133 fasta sequence [AATTCCACTGAAAAACAAATAACTTTTGGGGAAAACATAGTTACTAGAGGTAATAATGCCACACCACCTGTATCAAATAAACCTACACGATCTTACAGTCAACATTCACCTTCAATTCATTATGGTAGTGCACTGGCTACATTACCACGTAAAAAAGGTCCTGCACCTCGTCCACCATCTGTAGATGATCAAATGAATGTTCGGGGTGGAATGCCAAGTAATAGTACTGGTTTTTGGAGTACCTTCAATCGGTTGGACAATAGTCGTACATCATGTTCCTCGATTGATCATGAGAAATCATTGCCTAAAGATCATATTGACATAATCTTGGATGTCTTGGAGGAGAAGCCAATAATTTCTGAATCCCTCAATACTGCTAATCCTATTACAGTTACTAATAAAACTGGTACAATGTCTTCAACGATGAAAAACTCTTGTATTCCTATTACTACTTCCAGTATCAATACATCCCCTGCAATTCCACCTAAGCCAAGTTATTTATCTAATACAATTTATTCAACTTTACCTAATCGAAGTTCACATCTGAATAGAAATAGTTCTGTTCAACCTTGTTCAAATTTACCTGTCCTCTATGATTCTTCTTTCACGGAATCATCCCCAGATGCTTCTGTATCAACCAAAGAATTTCAAATATCAACAGTGAATTCACCTAGTCATTTAGTTGATTCCATTAAATTTTCTTTACCACAACATACAAATGATAAATATGATACCAGTCATTATTCACCATCATCATTGAAATGCCATAAAAGCTCAAATAATTTATCAATATTAAACTGTAAAGTAGGTGATCTATTAGAAGCTTTATATGATTGTGAAGCTGAAAATTCCGATGAATTGACATTTAATCGTGGAGAAATTATACAATTAATTGATAGACCAGATAATGATTGGTGGGAAGGTTTCATTCAATCAGACCCCAGTCGACGTGGAATGTTCCCAGTGACTTATGTAAAACGTTTATCTGATAATTGATTTATGCCAGTGCAATTATATACATGTTCATTTCTACCTTCTTATTTTGATCCTCATCAGCATTTTCATCGAAATCTGTCACTTTCGTGGAGCTACCATCCGCACCATATTTTATATAATCACACAATATTATTTCC] [-] EMBL CD065242 [AATTCCACTGAAAAACAAATAACTTTTGGGGAAAACATAGTTACTAGAGGTAATAATGCCACACCACCTGTATCAAATAAACCTACACGATCTTACAGTCAACATTCACCTTCAATTCATTATGGTAGTGCACTGGCTACATTACCACGTAAAAAAGGTCCTGCACCTCGTCCACCATCTGTAGATGATCAAATGAATGTTCGGGGTGGAATGCCAAGTAATAGTACTGGTTTTTGGAGTACCTTCAATCGGTTGGACAATAGTCGTACATCATGTTCCTCGATTGATCATGAGAAATCATTGCCTAAAGATCATATTGACATAATCTTGGATGTCTTGGAGGAGAAGCCAATAATTTCTGAATCCCTCAATACTGCTAATCCTATTACAGTTACTAATAAAACTGGTACAATGTCTTCAACGATGAAAAACTCTTGTATTCCTATTACTACTTCCAGTATCAATACATCCCCTGCAATTCCACCTAAGCCAAGTTATTTATCTAATACAATTTA ] [+] EMBL BF936960 [ CCCCTGCAATTCCACCTAAGCCAAGTTATTTATCTAATACAATTTATTCAACTTTACCTAATCGAAGTTCACATCTGAATAGAAATAGTTCTGTTCAACCTTGTTCAAATTTACCTGTCCTCTATGATTCTTCTTTCACGGAATCATCCCCAGATGCTTCTGTATCAACCAAAGAATTTCAAATATCAACAGTGAATTCACCTAGTCATTTAGTTGATTCCATTAAATTTTCTTTACCACAACATACAAATGATAAATATGATACCAGTCATTATTCACCATCATCATTGAAATGCCATAAAAGCTCAAATAATTTATCAATATTAAACTGTAAAGTAGGTGATCTATTAGAAGCTTTATATGATTGTGAAGCTGAAAATTCCGATGAATTGACATTTAATCGTGGAGAAATTATACAATTAATTGATAGACCAGATAATGATTGGTGGGAAGGTTTCATTCAATCAGACCCCAGTCGACGTGGAATGTTCCCAGTGACTTATGTAAAACGTTTATCTGATAATTGATTTATGCCAGTGCAATTATATACATGTTCATTTCTACCTTCTTATTTTGATCCTCATCAGCATTTTCATCGAAATCTGTCACTTTCGTGGAGCTACCATCCGCACCATATTTTATATAATCACACAATATTATTTCC] [-] EMBL CD167165 [ TCCTCTATGATTCTTCTTTCACGGAATCATCCCCAGATGCTTCTGTATCAACCAAAGAATTTCAAATATCAACAGTGAATTCACCTAGTCATTTAGTTGATTCCATTAAATTTTCTTTACCACAACATACAAATGATAAATATGATACCAGTCATTATTCACCATCATCATTGAAATGCCATAAAAGCTCAAATAATTTATCAATATTAAACTGTAAAGTAGGTGATCTATTAGAAGCTTTATATGATTGTGAAGCTGAAAATTCCGATGAATTGACATTTAATCGTGGAGAAATTATACAATTAATTGATAGACCAGATAATGATTGGTGGGAAGGTTTCATTCAATCAGACCCCAGTCGACGTGGAATGTTCCCAGT ] consensusID : consensus_6445#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence [GTCAATACTATTATTATCATTTCATCTTTTCTATTATCTAGCTTACAGTCAACATTCACCTTCAATTCATTATGGTAGTGCACTGGCTACATTACCACGTAAAAAAGGTCCTGCACCTCGTCCACCATCTGTAGATGATCAAATGAATGTTCGGGGTGGAATGCCAAGTAATAGTACTGGTGTAAGTAATTAATAGTTTTTGTTTTGTTCAGTTAATAATTGATTATATGCTCACTGCTTCCAACTTCATTTTTGATAAAAATTCATCATAAACTGGTGTAAATAACGCTTTGTTTGATAAATTCCCCTCATTGTTTTACATTAGGTTACCATGCTCATAAAAGAAATGATATTCCAGGGTTTTGAATCTGAGGTGGGTTATACTATATATATGTATANTGTGTGTATATTCAC] [-] EMBL CD112159 [GTCAATACTATTATTATCATTTCATCTTTTCTATTATCTAGCTTACAGTCAACATTCACCTTCAATTCATTATGGTAGTGCACTGGCTACATTACCACGTAAAAAAGGTCCTGCACCTCGTCCACCATCTGTAGATGATCAAATGAATGTTCGGGGTGGAATGCCAAGTAATAGTACTGGTGTAAGTAATTAATAGTTTTTGTTTTGTTCAGTTAATAATTGATTATATGCTCACTGCTTCCAACTTCATTTTTGATAAAAATTCATCATAAACTGGTGTAAATAACGCTTTGTTTGATAAATTCCCCTCATTGTTTTACATTAGGTTACCATGCTCATAAAAGAAATGATATTCCAGGGTTTTGAATCTGAGGTGGGTTATACTATATATATGTATANTGTGTGTATATTCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6445#0 AATTCCACTGAAAAACAAATAACTTTTGGGGAAAACATAGTTACTAGAGGTAATAATGCC 60 consensus_6445#1 ---------------------------------------GTCAATACTATTATTATCATT 21 ** * ** ** ** consensus_6445#0 ACACCACCTGTATCAAATAAACCTACACGATCTTACAGTCAACATTCACCTTCAATTCAT 120 consensus_6445#1 TCATCTTTTCTATTATCTAG-----------CTTACAGTCAACATTCACCTTCAATTCAT 70 ** * * *** * ** ***************************** consensus_6445#0 TATGGTAGTGCACTGGCTACATTACCACGTAAAAAAGGTCCTGCACCTCGTCCACCATCT 180 consensus_6445#1 TATGGTAGTGCACTGGCTACATTACCACGTAAAAAAGGTCCTGCACCTCGTCCACCATCT 130 ************************************************************ consensus_6445#0 GTAGATGATCAAATGAATGTTCGGGGTGGAATGCCAAGTAATAGTACTGGTTTTTGGAGT 240 consensus_6445#1 GTAGATGATCAAATGAATGTTCGGGGTGGAATGCCAAGTAATAGTACTGGTGT---AAGT 187 *************************************************** * *** consensus_6445#0 ACCTTCAATCGGTTGGACAATAGTCGTACATCATGTTCCTCGATTGATCATGAGAAATCA 300 consensus_6445#1 AATT--AATAGTTT------TTGTTTTGT-TCA-GTTAAT-AATTGATTATATGC--TCA 234 * * *** * ** * ** * *** *** * ****** ** * *** consensus_6445#0 TTGCCTA-AAGATCATATT-GACATAATCTTGGATGTCTTGGAGGAGAAGCCAATAATTT 358 consensus_6445#1 CTGCTTCCAACTTCATTTTTGATAAAAATTCA----TCATAAACT-GGTGTAAATAACGC 289 *** * ** **** ** ** * ** * ** * * * * ***** consensus_6445#0 CTGAATCCCTCAATACTGCTAATCCTATTACAGTTACTAATAAAACTGGTACAATGTCTT 418 consensus_6445#1 TTTGTTTGATAAATTCCCCTCATTGTTTTACATTAGGTTACCATGCTCATAAAAGA---- 345 * * * *** * ** ** * ***** * * * * ** ** ** consensus_6445#0 CAACGATGAAAAACTCTTGTATTCCTATTACTACTTCCAGTATCAATACATCCCCTGCAA 478 consensus_6445#1 -AATGATATTCCAGGGTTTTGAATCTGAGGTGGGTTATACTATATATATGTATANTGTGT 404 ** *** * ** * ** ** * *** *** * ** consensus_6445#0 TTCCACCTAAGCCAAGTTATTTATCTAATACAATTTATTCAACTTTACCTAATCGAAGTT 538 consensus_6445#1 GTATATTCAC-------------------------------------------------- 414 * * * consensus_6445#0 CACATCTGAATAGAAATAGTTCTGTTCAACCTTGTTCAAATTTACCTGTCCTCTATGATT 598 consensus_6445#1 ------------------------------------------------------------ consensus_6445#0 CTTCTTTCACGGAATCATCCCCAGATGCTTCTGTATCAACCAAAGAATTTCAAATATCAA 658 consensus_6445#1 ------------------------------------------------------------ consensus_6445#0 CAGTGAATTCACCTAGTCATTTAGTTGATTCCATTAAATTTTCTTTACCACAACATACAA 718 consensus_6445#1 ------------------------------------------------------------ consensus_6445#0 ATGATAAATATGATACCAGTCATTATTCACCATCATCATTGAAATGCCATAAAAGCTCAA 778 consensus_6445#1 ------------------------------------------------------------ consensus_6445#0 ATAATTTATCAATATTAAACTGTAAAGTAGGTGATCTATTAGAAGCTTTATATGATTGTG 838 consensus_6445#1 ------------------------------------------------------------ consensus_6445#0 AAGCTGAAAATTCCGATGAATTGACATTTAATCGTGGAGAAATTATACAATTAATTGATA 898 consensus_6445#1 ------------------------------------------------------------ consensus_6445#0 GACCAGATAATGATTGGTGGGAAGGTTTCATTCAATCAGACCCCAGTCGACGTGGAATGT 958 consensus_6445#1 ------------------------------------------------------------ consensus_6445#0 TCCCAGTGACTTATGTAAAACGTTTATCTGATAATTGATTTATGCCAGTGCAATTATATA 1018 consensus_6445#1 ------------------------------------------------------------ consensus_6445#0 CATGTTCATTTCTACCTTCTTATTTTGATCCTCATCAGCATTTTCATCGAAATCTGTCAC 1078 consensus_6445#1 ------------------------------------------------------------ consensus_6445#0 TTTCGTGGAGCTACCATCCGCACCATATTTTATATAATCACACAATATTATTTCC 1133 consensus_6445#1 ------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||