These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6460#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 535 fasta sequence [CTTGTACTACCAAGAAGTTCGAGAAAGCTGTTATCAGGAGACCTTCCAAGACCAAGGACCACACCCAAATCAGGCTCAGCAGTAGATAGAAGACAAACAGAATTGGAGCCACTTATGTTTGCATCATTGGTGGCCGCCACGGAACAGGATATAGCCTGTGTAGTTAACAAAGTGGATAACGTTTGTGGTGAAGTGCTAGACATAAGTGAACCAGTGTTGGTATACGATCCAGGACCCAAGAGATTAATAACACGAGCTCGAACAATATCACCTGGTCTAAAACAGCAGCCTGGTTCTGCCTGATCGCGCTGCGTAGCAGGAATATCCTCACGTCTTATGAGACCTTTGAATGGTCCGGCAAGGTAAACTTCTCCAATCGCGACGATATCGCAGCGAACGAATCGTCGTGTGATACTGGAAACTTTGGCTAACACAATTGACCCGGTGTAAGGAACTATGCCAGGAGTTTTCAATGGTGCAACTGAAAATGTTTTTGTTCCGTCCGTATGGGATTCCTCTTTGACATATCCAAATG] [+] EMBL CD111165 [CTTGTACTACCAAGAAGTTCGAGAAAGCTGTTATCAGGAGACCTTCCAAGACCAAGGACCACACCCAAATCAGGCTCAGCAGTAGATAGAAGACAAACAGAATTGGAGCCACTTATGTTTGCATCATTGGTGGCCGCCACGGAACAGGATATAGCCTGTGTAGTTAACAAAGTGGATAACGTTTGTGGTGAAGTGCTAGACATAAGTGAACCAGTGTTGGTATACGATCCAGGACCCAAAAGATTAATAACACGAGCTCGAACAATATCACCTGGTCT ] [-] EMBL CD125806 [ GCCTGTGTAGTTAACAAAGTGGATAACGTTGGTGGTGAAGTGCTAGACATAAGTGAACCAGTGTTGGTATACGATCCAGGACCCAAGAGATTAATAACACGAGC ] [+] EMBL CD065323 [ aatTGTAGGTATACGCTCCAGGACCCAAGAGATTAATAACACGAGCTCGAACAATATCACCTGGTCTAAAACAGCAGCCTGGTTCTGCCTGATCGCGCTGCGTAGCAGGAATATCCTCACGTCTTATGAGACCTTTGAATGGTCCGGCAAGGTAAACTTCTCCAATCGCGACGATATCGCAGCGAACGAATCGTCGTGTGATACTGGAAACTTTGGCTAACACAATTGACCCGGTGTAAGGAACTATGCCAGGAGTTTTCAATGGTGCAACTGAAAATGTTTTTGTTCCGTCCGTATGGGATTCCTCTTTGACATATCCAAATG] consensusID : consensus_6460#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [ACCAGTGTTGGTATACGATCCAGGACCCAAGAGATTAATAACACGAGCTCGAACAATATCACCTGGTCTAAAACAGCAGCCTGGTTCTGCCTGATCGCGCTGCGTAGCACGAATATCCTCACGTCTTATGAGACCTTTGAATGGTCCGGCAAGGTAAACTTCTCCAATCGCGACGATATCGCAGCGAACGAATCGTCGTGTGATACTGGAAACTTTGGCTAACACAATTGACCCGGTGTAAGGAACTATGCCAGGAGTTTTCAATGGTGCAATGTTCCGTCCGTATGGGATTCCTCTTTGACATATCCAAATGCGCTTGAAAG] [-] EMBL CD170708 [ACCAGTGTTGGTATACGATCCAGGACCCAAGAGATTAATAACACGAGCTCGAACAATATCACCTGGTCTAAAACAGCAGCCTGGTTCTGCCTGATCGCGCTGCGTAGCACGAATATCCTCACGTCTTATGAGACCTTTGAATGGTCCGGCAAGGTAAACTTCTCCAATCGCGACGATATCGCAGCGAACGAATCGTCGTGTGATACTGGAAACTTTGGCTAACACAATTGACCCGGTGTAAGGAACTATGCCAGGAGTTTTCAATGGTGCAATGTTCCGTCCGTATGGGATTCCTCTTTGACATATCCAAATGCGCTTGAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6460#0 CTTGTACTACCAAGAAGTTCGAGAAAGCTGTTATCAGGAGACCTTCCAAGACCAAGGACC 60 consensus_6460#1 ------------------------------------------------------------ consensus_6460#0 ACACCCAAATCAGGCTCAGCAGTAGATAGAAGACAAACAGAATTGGAGCCACTTATGTTT 120 consensus_6460#1 ------------------------------------------------------------ consensus_6460#0 GCATCATTGGTGGCCGCCACGGAACAGGATATAGCCTGTGTAGTTAACAAAGTGGATAAC 180 consensus_6460#1 ------------------------------------------------------------ consensus_6460#0 GTTTGTGGTGAAGTGCTAGACATAAGTGAACCAGTGTTGGTATACGATCCAGGACCCAAG 240 consensus_6460#1 -----------------------------ACCAGTGTTGGTATACGATCCAGGACCCAAG 31 ******************************* consensus_6460#0 AGATTAATAACACGAGCTCGAACAATATCACCTGGTCTAAAACAGCAGCCTGGTTCTGCC 300 consensus_6460#1 AGATTAATAACACGAGCTCGAACAATATCACCTGGTCTAAAACAGCAGCCTGGTTCTGCC 91 ************************************************************ consensus_6460#0 TGATCGCGCTGCGTAGCAGGAATATCCTCACGTCTTATGAGACCTTTGAATGGTCCGGCA 360 consensus_6460#1 TGATCGCGCTGCGTAGCACGAATATCCTCACGTCTTATGAGACCTTTGAATGGTCCGGCA 151 ****************** ***************************************** consensus_6460#0 AGGTAAACTTCTCCAATCGCGACGATATCGCAGCGAACGAATCGTCGTGTGATACTGGAA 420 consensus_6460#1 AGGTAAACTTCTCCAATCGCGACGATATCGCAGCGAACGAATCGTCGTGTGATACTGGAA 211 ************************************************************ consensus_6460#0 ACTTTGGCTAACACAATTGACCCGGTGTAAGGAACTATGCCAGGAGTTTTCAATGGTGCA 480 consensus_6460#1 ACTTTGGCTAACACAATTGACCCGGTGTAAGGAACTATGCCAGGAGTTTTCAATGGTGCA 271 ************************************************************ consensus_6460#0 ACTGAAAATGTTTTTGTTCCGTCCGTATGGGATTCCTCTTTGACATATCCAAATG----- 535 consensus_6460#1 A-------------TGTTCCGTCCGTATGGGATTCCTCTTTGACATATCCAAATGCGCTT 318 * ***************************************** consensus_6460#0 ----- consensus_6460#1 GAAAG 323 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||