These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6469#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 527 fasta sequence [TCAGGAGAGAGTTTGATGGAGAATGCTAGTGGGTGGCCTATGTTCCTTCTCGATAGGTATCAGGCGTATGTAAGTAATTAAGTAAAAATGTTGTATGAAAAGTGAACTTTGAGGTAGCATGTAGAGTCCATGCTTTATAGTTAAACTGGGTTTCGAAAAATGGAGCAACCAGGACTCAGTGTTGTTTAAAATGTAAAACAGTGTCCAACTTTTCAGTTAAAATACTAGTGTTAATATGAAATAATGTTTAATTCTGACATGTCAAGCCAAGTCATTTTCACGGGTATGAATTGTAATTTATATCGTCATTCGGCAACTGAGACACTTCCTCCGTATGGTTAATAACATGACTAAATCAATGAGATCTTTCAACTAAATATGTAAGACGATATAGGAACGAAGCATTGAATAGATTTGTGTGGTAGGACTGCATCATAAGTTAGCTGTTTTTCCAAAGCATCCTAAACGGGGCTTA-CCTTACAAACGGTGATGCTGAAAATAGTTT-ATGTTACAAAAGCTTACGTAAA] [+] EMBL CD087046 [TCAGGAGAGAGTTTGATGGAGAATGCTAGTGGGTGGCCTATGTTCCTTCTCGATAGGTATCAGGCGTATGTAAGTAATTAAGTAAAAATGTTGTATGAAAAGTGAACTTTGAGGTAGCATGTAGAGTCCATGCTTTATAGTTAAACTGGGTTTCGAAAAATGGAGCAACCAGGACTCAGTGTTGTTTAAAATGTAAAACAGTGTCCAACTTTTCAGTTAAAATACTAGTGTTAATATGAAATAATGTTTAATTCTGACATGTCAAGCCAAGTCATTTTCACGGGTATGAATTGTAATTTATATCGTCATTCGGCAACTGAGACACTTCCTCCGTATGGTTAATAACATGACTAAATCAATGAGATCTTTCAACTAAATATGTAAGACGATATANGAACGAAGCATTGAATAGATNTGTGTGGTAGGACTGCATCATAAGTTAGCTGTTTTTCCAAAGCATCCTAAACGGGGCTTACCCTTAC AACCGTGATGCTTAAAATAGTTTAATG TACCAAAGCTTACGTAAA] [-] EMBL CD087030 [ TGTCCAACTTTTCAGTTAAAATACTAGTGTTAATATGAAATAATGTTTAATTCTGACATGTCAAGCCAAGTCATTTTCACGGGTATGAGTTGTAATTTATATCGTCATTCGGCAACTGAGACACTTCCTCCGTATGGTTAATAACATGACTAAATCAATGAGATCTTTCAACTAAATATGTAAGACGATATAGGAACGAAGCATTGAATAGATTTGTGTGGTAGGACTGCATCATAAGTTAGCTGATTTTCCAAAGCATCCTAAACGGGGCTTA CCTTACAAACGGTGATGCTGAAAATAGTTT ATGTTACAAAAGCTTACG ] [-] EMBL CD087035 [ GAGACACTTCCTCCGTATGGTTAATAACATGATTAAATCAATGAGATCTTTCAACTAAATATGTAAGACGATATAGGAACGAAGCATTGAATAGATTTGTGTGGTAGGACTGCATCATAAGTTAGCTGTTTTTCCAAAGCATCTTAAACGGGGCTTA CCTTACAAACGGTGATGATGAAAATAGTTT ATGTTACAAAAGCTTACGTA ] consensusID : consensus_6469#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 521 fasta sequence [CAGAAAAGGATTTGAAGAAAAATTGGTAGGGGTAGCCATATGTTCCTTAGCGATGGGGTCGGGGGGTATTAAAGTATAAAATAAAATGTGTTGAAAAAAGAGTAATTTGGGGAGTAGAATGTAGAGCCCATTTTTAATAGATAAGTGGGTTTAAAAAAAATGGACCACACAGGACTCTTGTTTTTTAAAAAAATGAAAAAAAGTGCCAATTTTTTTAGTTAAAAACTAGAGTGTAAATATGAAAAATTGTTTATTTCAAACAGGCAAAGCAAATTATTTTAAGGGGGAGAGGGTGATATTAAAATCGTCAATGGGCAAAGTGAGACACTTCGTCGGTATGGTTAATAACATGACTAAATCAATGAGATCTTTCAATTAAATATGTAAGACGATATAGGAACAAAGCATTGAATAGATTTGTGTGGTAGGACTGCATCATAAGTTAGTTGTTTTTCCAAAGCATCATAAGAGGGGCTTACCTTACAAACGGTAATGCTGAAAATAGTTTATGTTACAAAAGC] [-] EMBL CD087034 [CAGAAAAGGATTTGAAGAAAAATTGGTAGGGGTAGCCATATGTTCCTTAGCGATGGGGTCGGGGGGTATTAAAGTATAAAATAAAATGTGTTGAAAAAAGAGTAATTTGGGGAGTAGAATGTAGAGCCCATTTTTAATAGATAAGTGGGTTTAAAAAAAATGGACCACACAGGACTCTTGTTTTTTAAAAAAATGAAAAAAAGTGCCAATTTTTTTAGTTAAAAACTAGAGTGTAAATATGAAAAATTGTTTATTTCAAACAGGCAAAGCAAATTATTTTAAGGGGGAGAGGGTGATATTAAAATCGTCAATGGGCAAAGTGAGACACTTCGTCGGTATGGTTAATAACATGACTAAATCAATGAGATCTTTCAATTAAATATGTAAGACGATATAGGAACAAAGCATTGAATAGATTTGTGTGGTAGGACTGCATCATAAGTTAGTTGTTTTTCCAAAGCATCATAAGAGGGGCTTACCTTACAAACGGTAATGCTGAAAATAGTTTATGTTACAAAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6469#0 TCAGGAGAGAGTTTGATGGAGAATGCTAGTGGGTGGCC-TATGTTCCTTCTCGATAGGTA 59 consensus_6469#1 -CAGAAAAGGATTTGAAGAAAAATTGGTAGGGGTAGCCATATGTTCCTTAGCGATGGGGT 59 *** * ** ***** * * *** **** *** ********** **** ** consensus_6469#0 TCAGGCGTATGTAAGTAATTAAGTAAAAATGTTGTATGAAAAGTGAACTTTGAGGTAGCA 119 consensus_6469#1 CGGGGGGTATTAAAGTATAAAATAAAATGTGTTGAAAAAAGAGTAATTTGGGGAGTAGAA 119 ** **** ***** ** *** ***** * ** *** * * * **** * consensus_6469#0 TGTAGAGTCCATGCTTTATAGTTAAACTGGGTTTCGAAAAATGGAGCAACCAGGACTCAG 179 consensus_6469#1 TGTAGAGCCCATTTTTAATAGATAAGTGGGTTTAAAAAAAATGGACCACACAGGACTCT- 178 ******* **** ** **** *** ** ** ********* ** ******** consensus_6469#0 TGTTGTTTAAAA---TGTAAAACAGTGTCCAACTTTTCAGTTAAAATACTAG--TGTTAA 234 consensus_6469#1 TGTTTTTTAAAAAAATGAAAAAAAGTGCCAATTTTTTTAGTTAAAA-ACTAGAGTGTAAA 237 **** ******* ** **** **** * * **** ******** ***** *** ** consensus_6469#0 TATGAAATAATGTTTAATTCTGACATGTCAAGCCAAGTCATTTTCACGGGTATGAATTGT 294 consensus_6469#1 TATGAAAAATTGTTTATTTCAAACA-GGCAAAGCAAATTATTTTAAGGGGGAGAGGGTGA 296 ******* * ****** *** *** * *** *** * ***** * *** * ** consensus_6469#0 AATTTATATCGTCATTCGGCAAC-TGAGACACTTCCTCCGTATGGTTAATAACATGACTA 353 consensus_6469#1 TATTAAAATCGTCAATGGGCAAAGTGAGACACTTCGTCGGTATGGTTAATAACATGACTA 356 *** * ******* * ***** *********** ** ********************* consensus_6469#0 AATCAATGAGATCTTTCAACTAAATATGTAAGACGATATAGGAACGAAGCATTGAATAGA 413 consensus_6469#1 AATCAATGAGATCTTTCAATTAAATATGTAAGACGATATAGGAACAAAGCATTGAATAGA 416 ******************* ************************* ************** consensus_6469#0 TTTGTGTGGTAGGACTGCATCATAAGTTAGCTGTTTTTCCAAAGCATCCTAAACGGGGCT 473 consensus_6469#1 TTTGTGTGGTAGGACTGCATCATAAGTTAGTTGTTTTTCCAAAGCATCATAAGAGGGGCT 476 ****************************** ***************** *** ****** consensus_6469#0 TACCTTACAAACGGTGATGCTGAAAATAGTTTATGTTACAAAAGCTTACGTAAA 527 consensus_6469#1 TACCTTACAAACGGTAATGCTGAAAATAGTTTATGTTACAAAAGC--------- 521 *************** ***************************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||