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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6543#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 753 fasta sequence
[CAAAGAAGCACTAACTTCAACGTGTCACGAGGTGCTCGGCCGCAACAATCATTATCATAAGGAATGGATCTCCATTGAAACCCTCGCCAAGATTCAAGAAAGGAAGAACAAGGAGACAGCAATTAACACCAGTAGAACAAGAACAGAGAAAGTCAATGCACAAACTGAATACACAGAAGCAAACAAGCAAGCGAAGAACAGCATTAGAGCTGACAAATAGAAATATGTGGAAGAGCTAGCAACGACAGTGGAAAAAGCTGTAACAGAAGGAATACGAAACAACTACATGACACAACGAAGAAACTGACAGGGAACTATTGTAAATCAGAGATCAGTCAAAGAAAAAGAGGGAAAGCCAATCACCGAAATTCAAGGACAGGGGAACAGATGGGTAGAACACTTTGAAGATCTCTTGAATAAACCGGCTCCATTGAATCCACCGGACATTGAAGCAGCACCTACAAACCTTCCTATAGATGTTACTCCACCAACGATCGAAGGAATCAGGATGGCCATCAGACTAATCAAGAGTGGGAAAGCAGCAGGATCTGGCAAAATGCCAGCTGAAGCATTGAAGTCAGACACACAAGTATCTGCAAATACGCTCCACATTCTCTCCAGAAATAACTGGGAAGATGTGTAAACTCTCATGTATCCTAGCAGCATCATCGATGAATGTGGAGGAACTGGTGCAGACGTAAAGGCGAAGATTGGAAAAGTAAGGGCCACATTCCTACAATTGTAGAACATATG]
[-] EMBL CD066405 [CAAAGAAGCACTAACTTCAACGTGTCACGAGGTGCTCGGCCGCAACAATCATTATCATAAGGAATGGATCTCCATTGAAACCCTCGCCAAGATTCAAGAAAGGAAGAACAAGGAGACAGCAATTAACACCAGTAGAACAAGAACAGAGAAAGTCAATGCACAAACTGAATACACAGAAGCAAACAAGCAAGCGAAGAACAGCATTAGAGCTGACAAATAGAAATATGTGGAAGAGCTAGCAACGACAGTGGAAAAAGCTGTAACAGAAGGAATACGAAACAACTACATGACACAACGAAGAAACTGACAGGGAACTATTGTAAATCAGAGATCAGTCAAAGAAAAAGAGGGAAAGCCAATCACCGAAATTCAAGGACAGGGGAACAGATGGGTAGAACACTTTGAAGATCTCTTGAA ]
[+] EMBL CD069306 [ cttgtgtgACAACTACATGACACAACGAAGAAACTGACAGGGAACTATTGTAAATCAGAGATCAGTCAAAGAAAAAGGGGGAAAGCCAATCACCGAAATTCAAGGACAGGGGAACAGATGGGTAGAACACTTTGTAGATCTCTTGAATAAACCGGCTCCATTGAATCCACCGGACATTGAAGCAGCACCTACAAACCTTCCTATAGATGTTACTCCACCAACGATCGAAGGAATCAGGATGGCCATCAGACTAATCAAGAGTGGGAAAGCAGCAGGATCTGGCAAAATGCCAGCTGAAGCATTGAAGTCAGACACACAAGTATCTGCAAATACGCTCCACATTCTCTCCAGAAATAACTGGGAAGATGTGTAAACTCTCATGTATCCTAGCAGCATCATCGATGAATGTGGAGGAACTGGTGCAGACGTAAAGGCGAAGATTGGAAAAGTAAGGGCCACATTCCTACAATTGTAGAACATATG]
consensusID : consensus_6543#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 438 fasta sequence
[TCAAGAACATAAGAACAGATGAGTAGAGCATTTTGAATAACTCTCGAATAGGCCAGCTCCATTGAATCCACCGAAAATCGAAACACCACACACAAACCTTTCTATAGATGTCACTCCACCAACGATCGAAGGAATCAGGGTGGCCATCAGACAAATGAAGAGTGGGAAAGCAGTAGGACCTGACAATATACTAGCCGACGCACTAAAGTCAGACATCGAAGAAACTGCGAGTAGGATATGTGCCGACAGACTGGAAGGAGGGATATCAGGTATATCAAGATACAAAAGAAAGCTGATCTGAGCAAGTGTGAGAACTAAGGAGGCATCACACTACTAGCGGTACCAGAAAGCATTTTCAACAGAATGTTCCTCTTTCATGAGGTTTATCAGGCGTAAGTAAGTAATTAGTGACTGGGATGTTTTCGTGATTTAAAAAGT]
[-] EMBL CD187026 [TCAAGAACATAAGAACAGATGAGTAGAGCATTTTGAATAACTCTCGAATAGGCCAGCTCCATTGAATCCACCGAAAATCGAAACACCACACACAAACCTTTCTATAGATGTCACTCCACCAACGATCGAAGGAATCAGGGTGGCCATCAGACAAATGAAGAGTGGGAAAGCAGTAGGACCTGACAATATACTAGCCGACGCACTAAAGTCAGACATCGAAGAAACTGCGAGTAGGATATGTGCCGACAGACTGGAAGGAGGGATATCAGGTATATCAAGATACAAAAGAAAGCTGATCTGAGCAAGTGTGAGAACTAAGGAGGCATCACACTACTAGCGGTACCAGAAAGCATTTTCAACAGAATGTTCCTCTTTCATGAGGTTTATCAGGCGTAAGTAAGTAATTAGTGACTGGGATGTTTTCGTGATTTAAAAAGT]
[-] EMBL CD192313 [ CGAGTAGGATATGTGCCGACAGACTGGAAGGAGGGATATCAGGTATATCAAGATACAAAAGAAAGCTGATCTGAGCAAGTGTGAGAACTAAGGAGGCATCACACTACTAGCGGTACCAGAAAGCATTTTCAACAGAATGTTCCTCTTTCATGAGGTTTATCAGGCGTAAGTAAGTAATT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6543#0 CAAAGAAGCACTAACTTCAACGTGTCACGAGGTGCTCGGCCGCAACAATCATTATCATAA 60
consensus_6543#1 ------------------------------------------------------------
consensus_6543#0 GGAATGGATCTCCATTGAAACCCTCGCCAAGATTCAAGAAAGGAAGAACAAGGAGACAGC 120
consensus_6543#1 ------------------------------------------------------------
consensus_6543#0 AATTAACACCAGTAGAACAAGAACAGAGAAAGTCAATGCACAAACTGAATACACAGAAGC 180
consensus_6543#1 ------------------------------------------------------------
consensus_6543#0 AAACAAGCAAGCGAAGAACAGCATTAGAGCTGACAAATAGAAATATGTGGAAGAGCTAGC 240
consensus_6543#1 ------------------------------------------------------------
consensus_6543#0 AACGACAGTGGAAAAAGCTGTAACAGAAGGAATACGAAACAACTACATGACACAACGAAG 300
consensus_6543#1 ------------------------------------------------------------
consensus_6543#0 AAACTGACAGGGAACTATTGTAAATCAGAGATCAGTCAAAGAAAAAGAGGGAAAGCCAAT 360
consensus_6543#1 ------------------------------------------------------------
consensus_6543#0 CACCGAAATTCAAGGACAGGGGAACAGATGGGTAGAACACTTTGAAGATCTCTTGAATAA 420
consensus_6543#1 ---------TCAAGAACATAAGAACAGATGAGTAGAGCATTTTGAATAACTCTCGAATAG 51
***** *** ********* ***** ** ****** * **** *****
consensus_6543#0 ACCGGCTCCATTGAATCCACCGGACATTGAAGCAGCACCTACAAACCTTCCTATAGATGT 480
consensus_6543#1 GCCAGCTCCATTGAATCCACCGAAAATCGAAACACCACACACAAACCTTTCTATAGATGT 111
** ****************** * ** *** ** *** ********* **********
consensus_6543#0 TACTCCACCAACGATCGAAGGAATCAGGATGGCCATCAGACTAATCAAGAGTGGGAAAGC 540
consensus_6543#1 CACTCCACCAACGATCGAAGGAATCAGGGTGGCCATCAGACAAATGAAGAGTGGGAAAGC 171
*************************** ************ *** **************
consensus_6543#0 AGCAGGATCTGGCAAAATGCCAGCTGAAGCATTGAAGTCAGACACACAAGTATCTGCAAA 600
consensus_6543#1 AGTAGGACCTGACAATATACTAGCCGACGCACTAAAGTCAGACATCGAAGAAACTGCGAG 231
** **** *** *** ** * *** ** *** * ********** *** * **** *
consensus_6543#0 TACGCTCCACATTCTCTCCAGAAATAACTGGGAAGATGTGTAAACTCTCATG-TATCCTA 659
consensus_6543#1 TAGG----ATATGTGCCGACAGACTGGAAGGAGGGATATCAGGTATATCAAGATACAAAA 287
** * * ** * * * ** *** * * *** * ** *
consensus_6543#0 GCAGCATCATCGATGAATGTGGAGGAACTGGTGCAG----ACG-TAAAGGCGAAGATTGG 714
consensus_6543#1 GAAAGCTGATCTGAGCAAGTGTGAGAACTAAGGAGGCATCACACTACTAGCGGTACCAGA 347
* * * *** * * *** ***** * * ** ** *** *
consensus_6543#0 AAAAGTAAGGGCCACATTCCTACAATTGTAGAACATATG--------------------- 753
consensus_6543#1 AAGCATTTTCAACAGAATGTTCCTCTTTCATGAGGTTTATCAGGCGTAAGTAAGTAATTA 407
** * ** * * * * ** * * * *
consensus_6543#0 -------------------------------
consensus_6543#1 GTGACTGGGATGTTTTCGTGATTTAAAAAGT 438
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||