These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_655#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1011 fasta sequence [GAGGTTCAAATCCATTAAATTTTTATGAAGAGAATGTTTCTAACTTACCTACTCAATATTATGATGATACACTTGGTTGCCAACTTCGTCATCATCAACAACATCATAATCCCAATCTGGCTTCACAATTTTATAGTACAGACATTCATCATTTGCTACGATCAGAAGATAATCGCGGTAACTGCGGTAAATATCTAAACAGTGCTTTATCCACATCACCTTCAGGTTATAAACCGAGTGGAATTTTCAACCGAATAAACATCGATAAGGTACAACAATATTCACAGCCTCCTATACTAATTCCCCAAAGTCATCCTGAATACCGAAGGAAATCTCAGATTCATAATCAAACTATAAGTACAATATCAACACAATTAGAGCCGTGGTATGCCTCAGCTGCTATCGGTTTGCCGAACAGTAGTAGTAATAGTAATAGCAATCGTCGATTAATGTCGGATTATGGTACATCACCAATAGATATGACGAATACACATCAATATCGTCATGAACATGTTGTCAGTCGTGATGAAAACAATGATAACAACCATGAGGAAAGCTTTCGATTCCCGCCTAAAATGCCAATCCTATCTGAAAGGCATAAATTATATGACGTCAACTCACAGTCTAGATTGATACCATCATTATCAGTATATTCACACCATTCCTATAGCTCTAACTNTNTAGATGCCGATAATCGATCATCTGTATGGAGTGGAGGTGAAATCATTCCCTTCGAAAGACCATCTACCACACTTAAGAGAACCAATGAATNNTTGAACACAGTCACCTCATACTACNTATTCCTNCCANACGTNNCGCTACATTAATCAGAAACATTNCTTCTCTGTACCNNGTACACTATGNATGACACATGAACCTNGAGCACANNGATGTNATTTTTCTATGACTATTTCAGGTAACAACAGAANNTGGNCCTTTATTACTTTTTCTCGAATTTNCTCTCCNTTAACTCNTTNACCNTGNTACGTNAANNTAAAACATAAAACATAA] [+] EMBL CD081273 [GAGGTTCAAATCCATTAAATTTTTATGAAGAGAATGTTTCTAACTTACCTACTCAATATTATGATGATACACTTGGTTGCCAACTTCGTCATCATCAACAACATCATAATCCCAATCTGGCTTCACAATTTTATAGTACAGACATTCATCATTTGCTACGATCAGAAGATAATCGCGGTAACTGCGGTAAATATCTAAACAGTGCTTTATCCACATCACCTTCAGGTTATAAACCGAGTGGAATTTTCAACCGAATAAACATCGATAAGGTACAACAATATTCACAGCCTCCTATACTAATTCCCCAAAGTCATCCTGAATACCGAAGGAAATCTCAGATTCATAATCAAACTATAAGTACAATATCAACACAATTAGAGCCGTGGTATGCCTCAGCTGCTATCGGTTTGCCGAACAGTAGTAGTAATAGTAATAGCAATCGTCGATTAATGTCGGATTATGGTACATCACCAATAGATATGACGAATACACATCAATATCGTCATGAACATGTTGTCAGTCGTGATGAAAACAATGATAACAACCATGAGGAAAGCTTTCGATTCCCGCCTAAAATGCCAATCCTATCTGAAAGGCATAAATTATATGACGTCAACTCACAGTCTAGATTGATACCATCATTATCAGTATATTCACACCATTCCTATAGCTCTAACTNTNTAGATGCCGATAATCGATCATCTGTATGGAGTGGAGGTGAAATCATTCCCTTCGAAAGACCATCTACCACACTTAAGAGAACCAATGAATNNTTGAACACAGTCACCTCATACTACNTATTCCTNCCANACGTNNCGCTACATTAATCAGAAACATTNCTTCTCTGTACCNNGTACACTATGNATGACACATGAACCTNGAGCACANNGATGTNATTTTTCTATGACTATTTCAGGTAACAACAGAANNTGGNCCTTTATTACTTTTTCTCGAATTTNCTCTCCNTTAACTCNTTNACCNTGNTACGTNAANNTAAAACATAAAACATAA] consensusID : consensus_655#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [TCACAGTCTAGATTGATACCATCATTATCAGTATATTCACACCATTCCTATAGCTCTAACTTTTTAGATGCCGATAATCGATCATCTGTATGGAGTGGAGGTGAATCAATTCCCTTTGAAAGACCATTTAACCCACACTTAAGAGAACCAAATGAATTTTTTGAACAACAGTCACCTTCATCACTACTATTTCCCTCCCCATCACGTCCGCCTCACATTACATCAGAAAACATTCCTTCCTCTGTACCGGTAACAACTTATTGTATGACACCATGAACCTTGGAGCCCAGTGATGTTTATTTTTTTAATGACTATTTTCAGGTTAACAAACAAGACATTGGGCTTTTATTTTACTTTTTTCTCGAATTTTTTTTTTTCCCTTATACTTCTTTCCCCTTGTATACGTTTAAGTTTAAATAACATTAAACATAATACTG] [-] EMBL CD075102 [TCACAGTCTAGATTGATACCATCATTATCAGTATATTCACACCATTCCTATAGCTCTAACTTTTTAGATGCCGATAATCGATCATCTGTATGGAGTGGAGGTGAATCAATTCCCTTTGAAAGACCATTTAACCCACACTTAAGAGAACCAAATGAATTTTTTGAACAACAGTCACCTTCATCACTACTATTTCCCTCCCCATCACGTCCGCCTCACATTACATCAGAAAACATTCCTTCCTCTGTACCGGTAACAACTTATTGTATGACACCATGAACCTTGGAGCCCAGTGATGTTTATTTTTTTAATGACTATTTTCAGGTTAACAAACAAGACATTGGGCTTTTATTTTACTTTTTTCTCGAATTTTTTTTTTTCCCTTATACTTCTTTCCCCTTGTATACGTTTAAGTTTAAATAACATTAAACATAATACTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_655#0 GAGGTTCAAATCCATTAAATTTTTATGAAGAGAATGTTTCTAACTTACCTACTCAATATT 60 consensus_655#1 ------------------------------------------------------------ consensus_655#0 ATGATGATACACTTGGTTGCCAACTTCGTCATCATCAACAACATCATAATCCCAATCTGG 120 consensus_655#1 ------------------------------------------------------------ consensus_655#0 CTTCACAATTTTATAGTACAGACATTCATCATTTGCTACGATCAGAAGATAATCGCGGTA 180 consensus_655#1 ------------------------------------------------------------ consensus_655#0 ACTGCGGTAAATATCTAAACAGTGCTTTATCCACATCACCTTCAGGTTATAAACCGAGTG 240 consensus_655#1 ------------------------------------------------------------ consensus_655#0 GAATTTTCAACCGAATAAACATCGATAAGGTACAACAATATTCACAGCCTCCTATACTAA 300 consensus_655#1 ------------------------------------------------------------ consensus_655#0 TTCCCCAAAGTCATCCTGAATACCGAAGGAAATCTCAGATTCATAATCAAACTATAAGTA 360 consensus_655#1 ------------------------------------------------------------ consensus_655#0 CAATATCAACACAATTAGAGCCGTGGTATGCCTCAGCTGCTATCGGTTTGCCGAACAGTA 420 consensus_655#1 ------------------------------------------------------------ consensus_655#0 GTAGTAATAGTAATAGCAATCGTCGATTAATGTCGGATTATGGTACATCACCAATAGATA 480 consensus_655#1 ------------------------------------------------------------ consensus_655#0 TGACGAATACACATCAATATCGTCATGAACATGTTGTCAGTCGTGATGAAAACAATGATA 540 consensus_655#1 ------------------------------------------------------------ consensus_655#0 ACAACCATGAGGAAAGCTTTCGATTCCCGCCTAAAATGCCAATCCTATCTGAAAGGCATA 600 consensus_655#1 ------------------------------------------------------------ consensus_655#0 AATTATATGACGTCAACTCACAGTCTAGATTGATACCATCATTATCAGTATATTCACACC 660 consensus_655#1 -----------------TCACAGTCTAGATTGATACCATCATTATCAGTATATTCACACC 43 ******************************************* consensus_655#0 ATTCCTATAGCTCTAACTNTNTAGATGCCGATAATCGATCATCTGTATGGAGTGGAGGTG 720 consensus_655#1 ATTCCTATAGCTCTAACTTTTTAGATGCCGATAATCGATCATCTGTATGGAGTGGAGGTG 103 ****************** * *************************************** consensus_655#0 AAATCATTCCCTTCGAAAGACCATCTA--CCACACTTAAGAGAACCAA-TGAATNNTT-G 776 consensus_655#1 AATCAATTCCCTTTGAAAGACCATTTAACCCACACTTAAGAGAACCAAATGAATTTTTTG 163 ** ******** ********** ** ******************* ***** ** * consensus_655#0 AACA-CAGTCACCT-CAT-ACTACNTATTCCTNCCANA---CGTNNCGCT-ACATTA-AT 828 consensus_655#1 AACAACAGTCACCTTCATCACTACTATTTCCCTCCCCATCACGTCCGCCTCACATTACAT 223 **** ********* *** ***** **** ** * *** ** ****** ** consensus_655#0 CAGAAA-CATTNCTTC-TCTGTACCNNGTACA--CTAT-GNATGACAC-ATGAACCTNG- 881 consensus_655#1 CAGAAAACATTCCTTCCTCTGTACCGGTAACAACTTATTGTATGACACCATGAACCTTGG 283 ****** **** **** ******** *** *** * ******* ******** * consensus_655#0 AGCACANNGATGTN-ATTTTTCTA-TGACTATTT-CAGGT-AACAAC--AGAANNTGGNC 935 consensus_655#1 AGCCCAGTGATGTTTATTTTTTTAATGACTATTTTCAGGTTAACAAACAAGACATTGGGC 343 *** ** ***** ****** ** ********* ***** ***** *** *** * consensus_655#0 CTTTATTAC---TTTTTCTCGAATTTNCTCT---CCNTTA-ACTCNTTNACCNTGNTACG 988 consensus_655#1 TTTTATTTTACTTTTTTCTCGAATTTTTTTTTTTCCCTTATACTTCTTTCCCCTTGTATA 403 ****** ************** * * ** *** *** ** ** * ** consensus_655#0 ----TNAANNTAAA--ACATAAAACATAA----- 1011 consensus_655#1 CGTTTAAGTTTAAATAACATTAAACATAATACTG 437 * * **** **** ******** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||