These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6567#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 710 fasta sequence [TCGATTGGTATCGCAATCTTGAAACACCAACCTCAGTAGTTCGAATACGTGTTATAAGTATCATCCCAGCAGTTTTCGCATCGTACGTTTTTTGCCAACTCTCAGGCTGAAATGCTGATTCGTGAATCTGGTGAAATGCTCAAGTTGACATGATTTAAAATTGGTTTGTCCCGTACATAATGAAAACAGACTTCATCAAGTTGTAACAAAGGAGGAGAAAGTTTCTCACAATCTGGCAGTCGAATCACAACTCTTAATTCTTTTTCAGGAGGAATTAATGGTGGCAACTTTTCTAAATGCTTAATTCTACTTTGTACGAGGGATGCACGTTTTGCATTGTAACGAAATTTATCTATAAATTGCTGTATATGCTCTCGTTCAGCTTTCAATGACTCGTACTCCCTTTGTCGATTTAGCAATCTTTCAGAACGAGCTTGCTCAAAAGCATCATAATTGCCTCGGTATGCATCCAAACGCTTGCAATTCAAGTGAATTATATCAGTTGCGACTGTATNTAAAAAACTTCGATCGTGTGAGACAATCAAAAGGATGTTGGACGAGGACTGCAAATAGTCTTCTAACCAAATTATTGCGCGCATATCAAGCATATTGGTAGGTTCATCCAGCAAAAGTAGGTCTGGTTTTGCAAAAAGTGCTTGTGCTAAAGCTAAACGCATACGCCATCCGCCGGAAAATTCTTTTGTAGGCCC] [+] EMBL CD195162 [TCGATTGGTATCGCAATCTTGAAACACCAACCTCAGTAGTTCGAATACGTGTTATAAGTATCATCCCAGCAGTTTTCGCATCGTACGTTTTTTGCCAACTCTCAGGCTGAAATGCTGATTCGTGAATCTGGTGAAATGCTCAAGTTGACATGATTTAAAATTGGTTTGTCCCGTACATAATGAAAACAGACTTCATCAAGTTGTAACAAAGGAGGAGAAAGTTTCTCACAATCTGGCAGTCGAATCACAACTCTTAATTCTTTTTCAGGAGGAATTAATGGTGGCAACTTTTCTAAATGCTTAATTCTACTTTGTACGAGGGATGCACGTTTTGCATTGTAACGAAATTTATCTATAAATTGCTGTATATGCTCTCGTTCAGCTTTCAATGACTCGTACTCCCTTTGTCGATTTAGCAATCTTTCAGAACGAGCTTGCTCAAAAGCATCATAATTGCCTCGGTATGCATCCAAACGCTTGCAATTCAAGTGAATTATATCAGTTGCGACTGTATNTAAAAAACTTCGATCGTGTGAGACA ] [-] EMBL CD067440 [ CAATTCAAGTGAATTATATCAGTTGGGACTGTATTTAAAAAACTTCGATCGTGTGAGACAATCAAAAGGATGTTGGACGAGGACTGCAAATAGTCTTCTAACCAAATTATTGCGCGCATATCAAGCATATTGGTAGGTTCATCCAGCAAAAGTAGGTCTGGTTTTGCAAAAAGTGCTTGTGCTAAAGCTAAACGCATACGCCATCCGCCGGAAAATTCTTTTGTAGGCCC] consensusID : consensus_6567#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [TTCCACATCTAGATGATTTGTCGGTTCATCGAGAACAAGCAAATTTGGACTGGACATACACATAGCAACAAATGCAACTCTTGATTTTTGTCCTCCTGACAAACTACCGATTGGTTGAAGAGCAAGCATTTCCGTTATATTGAAATTCGCCAACTGAGAACGATAAACTTGTTCAGTCTGGTTTGGGAACTTCCTCATCAAAAATTCTAAACTGCTTAATTTTAAATCCAGCTGGTCAACATGATGTTGGCTAAAGTAGCCAATACGTAAACTGCGATGTGCGTGGCGTAATCCTGAAGTCGGTTCTAACTCACCTAGAAGAAGCCGAAGTAATGTCGTTTTACCTGCACCATTTTCACCAACAATGCTGATTCGTGAATCTGGTGAAGTGCTCAANGTGACATGATTTAAAATTGGTTTGTCCAGTACATAATGAAAACAGACTTTCATCAGTTGTTACAAAGGAGGAGAAAGTTTCTCACAATCTGGCAGTCGAATCACAACTTTTAATTCT] [+] EMBL CD202043 [TTCCACATCTAGATGATTTGTCGGTTCATCGAGAACAAGCAAATTTGGACTGGACATACACATAGCAACAAATGCAACTCTTGATTTTTGTCCTCCTGACAAACTACCGATTGGTTGAAGAGCAAGCATTTCCGTTATATTGAAATTCGCCAACTGAGAACGATAAACTTGTTCAGTCTGGTTTGGGAACTTCCTCATCAAAAATTCTAAACTGCTTAATTTTAAATCCAGCTGGTCAACATGATGTTGGCTAAAGTAGCCAATACGTAAACTGCGATGTGCGTGGCGTAATCCTGAAGTCGGTTCTAACTCACCTAGAAGAAGCCGAAGTAATGTCGTTTTACCTGCACCATTTTCACCAACAATGCTGATTCGTGAATCTGGTGAAGTGCTCAANGTGACATGATTTAAAATTGGTTTGTCCAGTACATAATGAAAACAGACTTTCATCAGTTGTTACAAAGGAGGAGAAAGTTTCTCACAATCTGGCAGTCGAATCACAACTTTTAATTCT] consensusID : consensus_6567#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 218 fasta sequence [TCTGGCAGTCGAATCACAACTTTTAATTCTTTTTCAGGAGGAATTAATGGTGGCAACTTTTCTAAATGCTTAATTCTACTTTGTACGAGGGATGCACGTTTTGCATTGTAGCACGAATTTATCTATAAATTGCTGTATATGCTCTCGTTCAGCTTTCAATGAACTGCGATGTGCGTGGCGTAATCCTGAAGTCGGTTCTAACTCACCTAGAAGAAGCC] [-] EMBL CD190477 [TCTGGCAGTCGAATCACAACTTTTAATTCTTTTTCAGGAGGAATTAATGGTGGCAACTTTTCTAAATGCTTAATTCTACTTTGTACGAGGGATGCACGTTTTGCATTGTAGCACGAATTTATCTATAAATTGCTGTATATGCTCTCGTTCAGCTTTCAATGAACTGCGATGTGCGTGGCGTAATCCTGAAGTCGGTTCTAACTCACCTAGAAGAAGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6567#0 TCGATTGGTATCGCAATCTTGAAACACCAACCTCAGTAGTTCGAATACGTGTTATAAGTA 60 consensus_6567#2 ------------------------------------------------------------ consensus_6567#1 ------------------------------------------------------------ consensus_6567#0 TCATCCCAGCAGTTTTCGCATCGTACGTTTTTTGCCAACTCTCAGGCTGAAATGCTGATT 120 consensus_6567#2 ------------------------------------------------------------ consensus_6567#1 -----------------------------------------------------------T 1 consensus_6567#0 CGTGAATCTGGTGAAATGCTCAAGTTGACATGATTTAAAATTGGTTTGTCCCGTACATAA 180 consensus_6567#2 ------------------------------------------------------------ consensus_6567#1 TCCACATCTAGATGATTTGTCGGTTCATCGAGAAC--AAGCAAATTTGGACTGGACATAC 59 consensus_6567#0 TGAAAACAGACTTCATCAAGTTGTAACAAAGGAGGAGAAAGTTTCTCACAATCTGGCAGT 240 consensus_6567#2 ---------------------------------------------------TCTGGCAGT 9 consensus_6567#1 ACATAGCAAC--------AAATGCAACTCTTGATTTTTGTCCTCCTGACAAACTACCGAT 111 ** * * consensus_6567#0 CGAATCACAACTCTTAATTCTTTTTCAGGAGGAATTAATGGTGGCAACTTTTCTAAATGC 300 consensus_6567#2 CGAATCACAACTTTTAATTCTTTTTCAGGAGGAATTAATGGTGGCAACTTTTCTAAATGC 69 consensus_6567#1 TGGTTGAAGAGCAAGCATTTCCGTTATATTGAAATTCGCCAACTGAGAACGATAAACTTG 171 * * * * *** ** * **** * ** * consensus_6567#0 TTAATTCTACTTTGTACGAGGGATGCACGTTTTGCATTGTAACG-AAATTTATCTATA-- 357 consensus_6567#2 TTAATTCTACTTTGTACGAGGGATGCACGTTTTGCATTGTAGCACGAATTTATCTATA-- 127 consensus_6567#1 TTCAGTCTGGTTTG---GGAACTTCCTCATCAAAAATTCTAAACTGCTTAATTTTAAATC 228 ** * *** **** * * * * * *** ** * * ** * consensus_6567#0 -AATTGCTGTATATGCTCTCGTTCAGCTT--TCAATG----ACTCGTACTCCCTTTGTCG 410 consensus_6567#2 -AATTGCTGTATATGCTCTCGTTCAGCTT--TCAATG----AACTGCGATGTGCGTGGCG 180 consensus_6567#1 CAGCTGGTCAACATGATGTTGGCTAAAGTAGCCAATACGTAAACTGCGATGTGCGTGGCG 288 * ** * * *** * * * * * **** * * * ** ** consensus_6567#0 ATTTAGCAATCTTTCAGAACGAGCTTGCTCAAAAGCATCATAATTGCCTCGGTATGCATC 470 consensus_6567#2 TAATCCTGAAG--TCGGTTCTAACTCACCTAGAAGAAGCC-------------------- 218 consensus_6567#1 TAATCCTGAAG--TCGGTTCTAACTCACCTAGAAGAAGCCGAAGTAATGTCGTTTTACCT 346 * * ** * * * ** * * *** * * consensus_6567#0 CAAACGCTTGCAATTCAAGTGAATTATATCAGTTGCGACTGTATNTAAAAAACTTCGATC 530 consensus_6567#2 ------------------------------------------------------------ consensus_6567#1 GCACCATTTTCACCAACAATGCTGATTCGTGAATCTGGTGAAGTGCTCAANGTGACATGA 406 consensus_6567#0 GTGTGAGACAATCAAAAGGATGTTGGACGAGGACTGCAAATAGTCTTCTAACCAAATTAT 590 consensus_6567#2 ------------------------------------------------------------ consensus_6567#1 TTTAAAATTGGTTTGTCCAGTACATAATGAAAACAGACTTTCATCAGTTGTTACAAAGGA 466 consensus_6567#0 TGCGCGCATATCAAGCATATTGGTAGGTTCATCCAGCAAAAGTAGGTCTGGTTTTGCAAA 650 consensus_6567#2 ------------------------------------------------------------ consensus_6567#1 GGAGAAAGTTTCTCACAATCTGGCAG-TCGAATCACAACTTTTAATTCT----------- 514 consensus_6567#0 AAGTGCTTGTGCTAAAGCTAAACGCATACGCCATCCGCCGGAAAATTCTTTTGTAGGCCC 710 consensus_6567#2 ------------------------------------------------------------ consensus_6567#1 ------------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||