These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6578#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence [CGACTTAATAATCTCCTCGACAACAGTTACTAACAAATAACTTTGCGAAAAAGCGTATATTCACTCATCCATTTAGTGGATATCAGCGTGAGATCTCAACCACTCTAAGTCCTCAGAATACATATGGATTCAACCCGCCATCGAATAACCATAACATATTCCTGTCGGGTCCTCAAAATCATTCTCTGTCTAATAAAACTGACACATTGGAAACTAACCGAACACACTATCTTATCCGCAATCTGCACAGTACAAGTTTACCAAACAATGAACAGACATATGATTCGGTAAGGCAGTCAGGTATAGAGAACAAAAACAATATTTTATTACATGAGTACCAGAATAATAGTAGCAATATTAATAAAAGTTCTCAAATTCAATATCAGACTACGTATGCTTCGGATTATGAGGGGATAGATTTATCTCTCATGGGA] [+] EMBL CD202419 [CGACTTAATAATCTCCTCGACAACAGTTACTAACAAATAACTTTGCGAAAAAGCGTATATTCACTCATCCATTTAGTGGATATCAGCGTGAGATCTCAACCACTCTAAGTCCTCAGAATACATATGGATTCAACCCGCCATCGAATAACCATAACATATTCCTGTCGGGTCCTCAAAATCATTCTCTGTCTAATAAAACTGACACATTGGAAACTAACCGAACACACTATCTTATCCGCAATCTGCACAGTACAAGTTTACCAAACAATGAACAGACATATGATTCGGTAAGGCAGTCAGGTATAGAGAACAAAAACAATATTTTATTACATGAGTACCAGAATAATAGTAGCAATATTAATAAAAGTTCTCAAATTCAATATCAGACTACGTATGCTTCGGATTATGAGGGGATAGATTTATCTCTCATGGGA] consensusID : consensus_6578#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 301 fasta sequence [ACCTCAATTGATAAAACATATCCTACAACACGAATAAATTCCAGTAGAATAAATAAAGTACAAGGTTATGCTGATCTGTTAATTGGTCGACCTAAACTGCATGATGACTTTTTAATCCCTCGACAACAGTTACTAACAAATAACTTTTCGTTAAATCGTTTATTTACTCATCCATTTAATGGATATCAACATGAGAACTCAACCACACTAAGTCCTCAGAATACATATCGATTCAACCCGCCATCGAATAACCATAACATATTCCTGTCTGGTCCTCAAAATCATTCTCTGTCTAATAAAA] [-] EMBL CD068154 [ACCTCAATTGATAAAACATATCCTACAACACGAATAAATTCCAGTAGAATAAATAAAGTACAAGGTTATGCTGATCTGTTAATTGGTCGACCTAAACTGCATGATGACTTTTTAATCCCTCGACAACAGTTACTAACAAATAACTTTTCGTTAAATCGTTTATTTACTCATCCATTTAATGGATATCAACATGAGAACTCAACCACACTAAGTCCTCAGAATACATAT ] [-] EMBL CD195605 [ AAGTACAAGGTTATGCTGATCTGTTAATTGGTCGACCTAAACTGCATGATGACTTTTTAATCCCTCGACAACAGTTACTAACAAATAACTTTTCGTTAAATCGTTTATTTACTCATCCATTTAATGGATATCAACATGAGAACTCAACCACACTAAGTCCTCAGAATACATATCGATTCAACCCGCCATCGAATAACCATAACATATTCCTGTCTGGTCCTCAAAATCATTCTCTGTCTAATAAAA] [-] EMBL CD195798 [ CACTAAGTCCTCAGAATACATATCGATTCAACCCGCCATCGAATAACCATAACATATTCCTGTCTGGTCCTCAAAATCATTCTCTGTCTAATAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6578#0 ------------------------------------------------------------ consensus_6578#1 ACCTCAATTGATAAAACATATCCTACAACACGAATAAATTCCAGTAGAATAAATAAAGTA 60 consensus_6578#0 --------------------------------------------CGACTTAATAATCTCC 16 consensus_6578#1 CAAGGTTATGCTGATCTGTTAATTGGTCGACCTAAACTGCATGATGACTTTTTAATC-CC 119 ***** ***** ** consensus_6578#0 TCGACAACAGTTACTAACAAATAACTTTGCGAAAAAGCGTATATTCACTCATCCATTTAG 76 consensus_6578#1 TCGACAACAGTTACTAACAAATAACTTTTCGTTAAATCGTTTATTTACTCATCCATTTAA 179 **************************** ** *** *** **** ************* consensus_6578#0 TGGATATCAGCGTGAGATCTCAACCACTCTAAGTCCTCAGAATACATATGGATTCAACCC 136 consensus_6578#1 TGGATATCAACATGAGAACTCAACCACACTAAGTCCTCAGAATACATATCGATTCAACCC 239 ********* * ***** ********* ********************* ********** consensus_6578#0 GCCATCGAATAACCATAACATATTCCTGTCGGGTCCTCAAAATCATTCTCTGTCTAATAA 196 consensus_6578#1 GCCATCGAATAACCATAACATATTCCTGTCTGGTCCTCAAAATCATTCTCTGTCTAATAA 299 ****************************** ***************************** consensus_6578#0 AACTGACACATTGGAAACTAACCGAACACACTATCTTATCCGCAATCTGCACAGTACAAG 256 consensus_6578#1 AA---------------------------------------------------------- 301 ** consensus_6578#0 TTTACCAAACAATGAACAGACATATGATTCGGTAAGGCAGTCAGGTATAGAGAACAAAAA 316 consensus_6578#1 ------------------------------------------------------------ consensus_6578#0 CAATATTTTATTACATGAGTACCAGAATAATAGTAGCAATATTAATAAAAGTTCTCAAAT 376 consensus_6578#1 ------------------------------------------------------------ consensus_6578#0 TCAATATCAGACTACGTATGCTTCGGATTATGAGGGGATAGATTTATCTCTCATGGGA 434 consensus_6578#1 ---------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||