These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6596#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 784 fasta sequence [TTCACTCATTACAGCACGATGTGGAAGATGAGATGCGTATACAGATGCAACCTGACCAAGTAAGTATTCACTTCCATTAGGACTGAACCATGAACAACTCCAGTTATAATCACTTGATAAATCACACGCTTCAGTATCTGATAATTTATCTGAAGTTGTTTTGTCTATACACCTATCACCAGTACCCATTAGTAGTGAATGAGAGAGGGAATGAGGTATTATGCAACAAAAAGAAGGATAAACACTGAGGGTGAATTCGTAGGTGGCTTCTGTTAGTTTATGGGGACAACTGTCATAAGTTCGCGATCTAATTTTGTCTGCATAGTTAGCAGATTTTGTGGACCGGTACAGCTGAGATATCACTGCAGACGAAATTTGTTCGTGAGAATCCGTGAAAGTCACATGTTCAACACCGCGAGCAGCTCCCCTCAAAAGGCCAATAAGAGTAGGAGCAAGGAACGTACATAGTCGTTCAGCTGCTAACTGTTGGCCTTGAACTTTTACAGCGTCAGGTGAAGTATTTCGAGCCCTTGGCTGCCGAAGAAATGCTGAAACAGCAGCGAAACGATCCAAGGGCTGCTGTAACGACTCATTTATTTGATCAATGATATTACTTGCAGAATCCAAAATACCAGAAATGATTGTTTCTGAACGGTTTGAATCTAAGAGAGCGATTTGAGTCAGTAGACTAGAAAGAGCGAAACTAAAACATTCAGCTTGTGGAAGTTTTTGAAAGTCAGAGCTGACAATATAATCTGTTACATAGCTTTTATGCAATTTTCGT] [+] EMBL CD191953 [TTCACTCATTACAGCACGATGTGGAAGATGAGATGCGTATACAGATGCAACCTGACCAAGTAAGTATTCACTTCCATTAGGACTGAACCATGAACAACTCCAGTTATAATCACTTGATAAATCACACGCTTCAGTATCTGATAATTTATCTGAAGTTGTTTTGTCTATACACCTATCACCAGTACCCATTAGTAGTGAATGAGAGAGGGAATGAGGTATTATGCAACAAAAAGAAGGATAAACACTGAGGGTGAATTCGTAGGTGGCTTCTGTTA ] [+] EMBL CD069390 [ TGCAA CTGACCAAGTAAGTATTCACTTCCATTAGGACTGAACCATGAACAACTCCAGTTATAATCACTTGATAAATCACACGCTTCAGTATCTGATAATTTATCTGAAGTTGTTTTGTCTATACACCTATCACCAGTACCCATTAGTAGTGAATGAGAGAGGGAATGAGGTATTATGCAACAAAAAGAAGGATAAACACTGAGGGTGAATTCGTAGGTGGCTTCTGTTAGTTTATGGGGACAACTGTCATAAGTTCGCGATCTAATTTTGTCTGCATAGTTAGCAGATTTTGTGGACCGGTACAGCTGAGATATCACTGCAGACGAAATTTGTTCGTGAGAATCCGTGAAAGTCACATGTTCAACACCGCGAGCAGCTCCCCTCAAAAGGCCAATAAGAGTAGGAGCAAGGAACGTACATAGTCGTTCAGCTGCTAACTGTTGGCCTTGAACTTTTACAGCGTCAGGTGAAGTATTTCGAGCCCTTGGCTGCCGAAGAAATGCTGAAACAGCAGCGAAACGATCCAAGGGCTGCTGTAACGACTCAT ] [+] EMBL CD185018 [ CAGACGAAATTTGTTCGTGAGAATCCGTGAAAGTCACATGTCCAACACCGCGAGCAGCTCCCCTCAAAAGGCCAATAAGAGTAGGAGCAAGGAACGTACATAGTCGTTCAGCTGCTAACTGTTGGCCTTGAACTTTTACAGCGTCAGGTGAAGTATTTCGAGCCCTTGGCTGCCGAAGAAATGCTGAAACAGCAGCGAAACGATCCAAGGGCTGCTGTAACAACTCATTTATTTGATCAATGATATTACTTGCAGAATCCAAAATACCAGAAATGATTGTTTCTGAACGGTTTGAATCTAAGAGAGCGATTTGAGTCAGTAGACTAGAAAGAGCGAAACTAAAACATTCAGCTTGTGGAAGTTTTTGAAAGTCAGAGCTGACAATATAATCTGTTACATAGCTTTTATGCAATTTTCGT] consensusID : consensus_6596#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 426 fasta sequence [TCCACAAGCTGAACGTTTTAGTTTCGCTCTTTCTAGTCTACTGACTCAAATCGCTCTCTTAGATTCAAACCGTTCAGCTGCTAACTGTTGGCCTTGAACTTTTACAGCGTCAGGTGAAGTATTTCGAGCCCTTGGCTGCCGAAGAAATGCTGAAACAGCAGCGAAACGATCCAAGGGCTGCTGTAACAACTCATTTATTTGATCAATGATATTACTTGCAGAATCCAAAATACCAGAAATGATTGTTTCTGAACGGTTTGAATCTAAGAGAGCGATTTGAGTCAGTAGACTAGAAAGAGCGAAACTAAAACGTTCAGCTTGTGGAAGTTTTAGAAAGTCATAGCTGACAATATTATATGTTAAACAGCTGTTATGCAGTTCTCGTAGCACACTGAGCAGAACGCATATTAACTTGACAACAGACCT] [+] EMBL CD095829 [TCCACAAGCTGAACGTTTTAGTTTCGCTCTTTCTAGTCTACTGACTCAAATCGCTCTCTTAGATTCAAACCGTTCAGCTGCTAACTGTTGGCCTTGAACTTTTACAGCGTCAGGTGAAGTATTTCGAGCCCTTGGCTGCCGAAGAAATGCTGAAACAGCAGCGAAACGATCCAAGGGCTGCTGTAACAACTCATTTATTTGATCAATGATATTACTTGCAGAATCCAAAATACCAGAAATGATTGTTTCTGAACGGTTTGAATCTAAGAGAGCGATTTGAGTCAGTAGACTAGAAAGAGCGAAACTAAAACGTTCAGCTTGTGGAAGTTTTAGAAAGTCATAGCTGACAATATTATATGTTAAACAGCTGTTATGCAGTTCTCGTAGCACACTGAGCAGAACGCATATTAACTTGACAACAGACCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6596#0 TTCACTCATTACAGCACGATGTGGAAGATGAGATGCGTATACAGATGCAACCTGACCAAG 60 consensus_6596#1 ------------------------------------------------------------ consensus_6596#0 TAAGTATTCACTTCCATTAGGACTGAACCATGAACAACTCCAGTTATAATCACTTGATAA 120 consensus_6596#1 ------------------------------------------------------------ consensus_6596#0 ATCACACGCTTCAGTATCTGATAATTTATCTGAAGTTGTTTTGTCTATACACCTATCACC 180 consensus_6596#1 ------------------------------------------------------------ consensus_6596#0 AGTACCCATTAGTAGTGAATGAGAGAGGGAATGAGGTATTATGCAACAAAAAGAAGGATA 240 consensus_6596#1 ------------------------------------------------------------ consensus_6596#0 AACACTGAGGGTGAATTCGTAGGTGGCTTCTGTTAGTTTATGGGGACAACTGTCATAAGT 300 consensus_6596#1 ------------------------------------------------------------ consensus_6596#0 TCGCGATCTAATTTTGTCTGCATAGTTAGCAGATTTTGTGGACCGGTACAGCTGAGATAT 360 consensus_6596#1 ------------------------------------------------------------ consensus_6596#0 CACTGCAGACGAAATTTGTTCGTGAGAATCCGTGAAAGTCACATGTTCAACACCGCGAGC 420 consensus_6596#1 -------------------------------------TCCACAAGCTGAACGTTTTAGTT 23 **** * * *** consensus_6596#0 A-GCTCCCCTCAAAAGGCCAATAAGAGTAGGAGCAAGGAACGTACATAGTCGTTCAGCTG 479 consensus_6596#1 TCGCTCTTTCTAGTCTACTGACTCAAATCGCTCTCTTAGATTCA---AACCGTTCAGCTG 80 **** * * * * * * * * * ********** consensus_6596#0 CTAACTGTTGGCCTTGAACTTTTACAGCGTCAGGTGAAGTATTTCGAGCCCTTGGCTGCC 539 consensus_6596#1 CTAACTGTTGGCCTTGAACTTTTACAGCGTCAGGTGAAGTATTTCGAGCCCTTGGCTGCC 140 ************************************************************ consensus_6596#0 GAAGAAATGCTGAAACAGCAGCGAAACGATCCAAGGGCTGCTGTAACGACTCATTTATTT 599 consensus_6596#1 GAAGAAATGCTGAAACAGCAGCGAAACGATCCAAGGGCTGCTGTAACAACTCATTTATTT 200 *********************************************** ************ consensus_6596#0 GATCAATGATATTACTTGCAGAATCCAAAATACCAGAAATGATTGTTTCTGAACGGTTTG 659 consensus_6596#1 GATCAATGATATTACTTGCAGAATCCAAAATACCAGAAATGATTGTTTCTGAACGGTTTG 260 ************************************************************ consensus_6596#0 AATCTAAGAGAGCGATTTGAGTCAGTAGACTAGAAAGAGCGAAACTAAAACATTCAGCTT 719 consensus_6596#1 AATCTAAGAGAGCGATTTGAGTCAGTAGACTAGAAAGAGCGAAACTAAAACGTTCAGCTT 320 *************************************************** ******** consensus_6596#0 GTGGAAGTTTTTGAAAGTCAGAGCTGACAATATAATCTGTTACATAGCTTTTATGCAATT 779 consensus_6596#1 GTGGAAGTTTTAGAAAGTCATAGCTGACAATATTATATGTTAAACAGCTGTTATGCAGTT 380 *********** ******** ************ ** ***** * **** ******* ** consensus_6596#0 TTCGT----------------------------------------- 784 consensus_6596#1 CTCGTAGCACACTGAGCAGAACGCATATTAACTTGACAACAGACCT 426 **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||