cluster # 6599

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Schistosoma mansoni
cluster # 6599 cluster # 6599 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6599#0 length = 864 sequences # 3

consensus_6599#1 length = 239 sequences # 1

consensusID : consensus_6599#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 864
fasta sequence

                              [ACCTACTATAATTCAAACTCAATCGTCGAGAAACTCATAGAGTGCGTCCTGGTGGTAGGCTGATTTTAGAATGTGAAGCATCCGGCGTTCCACCACCTATGATTATTTGGCGTTTCAATTGGAGATGTCTTCGTGATGAAACACTGAATGAGGACCCAAGCTGTGCCAATGTTCGCTTGAATGTCCGGGTTCAAAAAGTCGTCTAACGATCGAAAACTTCAGGGAAGGTGACGATGGAATTTACAATTGTGAAGCACTGACATCGAAAGAAAGAGCCATGTCCCAGGATATATTTGTTTTCCTATCTCCTTAGTTATGTTTTCATTTTCAAGTGATATTATAAAATATCAAGTTGAATTAATAGTTATATTATCATTTTATCATATATTTTTCAAATTTCTAATTTAATTCTATATGCCAAAATAGCAATGTTCTGAATTTCACAATAGTATATCTTTAAATCATCATACAATTAATTTTGCCCTTTGGAATTTTAATTTTCAAGTTATACGTTATTCTGTTATATGAAATTCTAAATATAATGCTTATTTGAAGAGATTCCAGCTTTTAGTACACCATTTACAAAATTTTAAGCTCAGAGATCAAAGCATACTTACTTATACCTGTTATCCTTCAAGGAGGAGAATAGGCTACCCACCAACATCCCCAATCCAACCTTGTCTTCAGCAATCCTTTCCAGCTCCTTCCAATTGTTATTCATTCTCTCCACGTCTCGGACCAAGTGTGTTTTTTGACTTTCCTCTTTTCCATTTACCTTCAGGATTGCAAATTATCACTTGTCTCGTGATACAGTTTGATGATTTCCGTAATATATGTTCTATCCACTTCCAACGTATTTTCCTA]

[+] EMBL CD069698             [ACCTACTATAATTCAAACTCAATCGTCGAGAAACTCATAGAGTGCGTCCTGGTGGTAGGCTGATTTTAGAATGTGAAGCATCCGGCGTTCCACCACCTATGATTATTTGGCGTTTCAATTGGAGATGTCTTCGTGATGAAACACTGAATGAGGACCCAAGCTGTGCCAATGTTCGCTTGAATGTCCGGGTTCAAAAAGTCGTCTAACGATCGAAAACTTCAGGGAAGGTGACGATGGAATTTACAATTGTGAAGCACTGACATCGAAAGAAAGAGCCATGTCCCAGGATATATTTGTTTTCCTATCTCCTTAGTTATGTTTTCATTTTCAAGTGATATTATAAAATATCAAGTTGAATTAATAGTTATATTATCATTTTATCATATATTTTTCAAATTTCTAATTTAATTCTATATGCCAAAATAGCAATGTTCTGAATTTCACAATAGTATATCTTTAAAT                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD069647             [ACCTACTATAATTCAAACTCAA CGTCAAGAAACTCATAGAGTTCGTCCTGGTGGTAGGCTGATTTTAGAATGTGAAGCATCCGGCGTTCCACCACCTATGATTATTTGGCGTTTCAATTGGAGATGTCTTCGTGATGAAACAC GAATGAGGACCCAAGCTGTGCCAA GTTCGCTTGAATGTAAGGGTTCAAAAAGTCGTCTAACGATCGAAAACTTCAGGGAAGGTGACGATGGAATTTACAATTGTGAAGCACTGACATCGAAAGAAAGAGCCATGTCCCAGGATATATTTGTTTTCCTATCTCCTTAGTTATGTTTTCATTTTCAAGTGATGTTATAAAATATCAAGTTGAATTAATAGTTATATTATCATTTTATCATATATTTTTCAAATTTCTAATTTAATTCTATATGCCAAAATAGCAATGTTCTGAATTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD069645             [                                                                                                                                                                                                                                                                                                                                                                                                                            ATATGCCAAAATAGCAATGTTCTGAATTTCACAATAGTATATCTTTAAATCATCATACAATTAATTTTGCCCTTTGGAATTTTAATTTTCAAGTTATACGTTATTCTGTTATATGAAATTCTAAATATAATGCTTATTTGAAGAGATTCCAGCTTTTAGTACACCATTTACAAAATTTTAAGCTCAGAGATCAAAGCATACTTACTTATACCTGTTATCCTTCAAGGAGGAGAATAGGCTACCCACCAACATCCCCAATCCAACCTTGTCTTCAGCAATCCTTTCCAGCTCCTTCCAATTGTTATTCATTCTCTCCACGTCTCGGACCAAGTGTGTTTTTTGACTTTCCTCTTTTCCATTTACCTTCAGGATTGCAAATTATCACTTGTCTCGTGATACAGTTTGATGATTTCCGTAATATATGTTCTATCCACTTCCAACGTATTTTCCTA]




>consensus_6599#0
ACCTACTATAATTCAAACTCAATCGTCGAGAAACTCATAGAGTGCGTCCTGGTGGTAGGC
TGATTTTAGAATGTGAAGCATCCGGCGTTCCACCACCTATGATTATTTGGCGTTTCAATT
GGAGATGTCTTCGTGATGAAACACTGAATGAGGACCCAAGCTGTGCCAATGTTCGCTTGA
ATGTCCGGGTTCAAAAAGTCGTCTAACGATCGAAAACTTCAGGGAAGGTGACGATGGAAT
TTACAATTGTGAAGCACTGACATCGAAAGAAAGAGCCATGTCCCAGGATATATTTGTTTT
CCTATCTCCTTAGTTATGTTTTCATTTTCAAGTGATATTATAAAATATCAAGTTGAATTA
ATAGTTATATTATCATTTTATCATATATTTTTCAAATTTCTAATTTAATTCTATATGCCA
AAATAGCAATGTTCTGAATTTCACAATAGTATATCTTTAAATCATCATACAATTAATTTT
GCCCTTTGGAATTTTAATTTTCAAGTTATACGTTATTCTGTTATATGAAATTCTAAATAT
AATGCTTATTTGAAGAGATTCCAGCTTTTAGTACACCATTTACAAAATTTTAAGCTCAGA
GATCAAAGCATACTTACTTATACCTGTTATCCTTCAAGGAGGAGAATAGGCTACCCACCA
ACATCCCCAATCCAACCTTGTCTTCAGCAATCCTTTCCAGCTCCTTCCAATTGTTATTCA
TTCTCTCCACGTCTCGGACCAAGTGTGTTTTTTGACTTTCCTCTTTTCCATTTACCTTCA
GGATTGCAAATTATCACTTGTCTCGTGATACAGTTTGATGATTTCCGTAATATATGTTCT
ATCCACTTCCAACGTATTTTCCTA

consensusID : consensus_6599#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 239
fasta sequence

                              [AGCTAGTATAATTCATAAACTCAATGTCAAGAAACTCATAGAGATTCGTCCTGGTGGTACGGCTGATTTGAGAATGTGAAGCGTCCGGCGTTCCACCACCTATGATTATTTGGCGTGGCATTTGGAGATGTCTTCGTGATGAAACACGAATGAGGACCCAAGCTGTGCCACGTTCGCTTGAATGTTAGGGTTCCCAAAGTCGTCTAACGATCGAAAACTTCAGGGCAAGGTGACGATGG]

[+] EMBL CD069642             [AGCTAGTATAATTCATAAACTCAATGTCAAGAAACTCATAGAGATTCGTCCTGGTGGTACGGCTGATTTGAGAATGTGAAGCGTCCGGCGTTCCACCACCTATGATTATTTGGCGTGGCATTTGGAGATGTCTTCGTGATGAAACACGAATGAGGACCCAAGCTGTGCCACGTTCGCTTGAATGTTAGGGTTCCCAAAGTCGTCTAACGATCGAAAACTTCAGGGCAAGGTGACGATGG]




>consensus_6599#1
AGCTAGTATAATTCATAAACTCAATGTCAAGAAACTCATAGAGATTCGTCCTGGTGGTAC
GGCTGATTTGAGAATGTGAAGCGTCCGGCGTTCCACCACCTATGATTATTTGGCGTGGCA
TTTGGAGATGTCTTCGTGATGAAACACGAATGAGGACCCAAGCTGTGCCACGTTCGCTTG
AATGTTAGGGTTCCCAAAGTCGTCTAACGATCGAAAACTTCAGGGCAAGGTGACGATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6599#0      ACCTACTATAATTCA--AACTCAATCGTCGAGAAACTCATAGAG-TGCGTCCTGGTGGTA 57
consensus_6599#1      AGCTAGTATAATTCATAAACTCAAT-GTCAAGAAACTCATAGAGATTCGTCCTGGTGGTA 59
                      * *** *********  ******** *** ************** * *************

consensus_6599#0      -GGCTGATTTTAGAATGTGAAGCATCCGGCGTTCCACCACCTATGATTATTTGGCGTTTC 116
consensus_6599#1      CGGCTGATTTGAGAATGTGAAGCGTCCGGCGTTCCACCACCTATGATTATTTGGCGTGGC 119
                       ********* ************ *********************************  *

consensus_6599#0      AATTGGAGATGTCTTCGTGATGAAACACTGAATGAGGACCCAAGCTGTGCCAATGTTCGC 176
consensus_6599#1      ATTTGGAGATGTCTTCGTGATGAAACAC-GAATGAGGACCCAAGCTGTGCCA-CGTTCGC 177
                      * ************************** ***********************  ******

consensus_6599#0      TTGAATGTCCGGGTTCAAAAAGTCGTCTAACGATCGAAAACTTCAGGG-AAGGTGACGAT 235
consensus_6599#1      TTGAATGTTAGGGTTCCCAAAGTCGTCTAACGATCGAAAACTTCAGGGCAAGGTGACGAT 237
                      ********  ******  ****************************** ***********

consensus_6599#0      GGAATTTACAATTGTGAAGCACTGACATCGAAAGAAAGAGCCATGTCCCAGGATATATTT 295
consensus_6599#1      GG---------------------------------------------------------- 239
                      **                                                          

consensus_6599#0      GTTTTCCTATCTCCTTAGTTATGTTTTCATTTTCAAGTGATATTATAAAATATCAAGTTG 355
consensus_6599#1      ------------------------------------------------------------
                                                                                  

consensus_6599#0      AATTAATAGTTATATTATCATTTTATCATATATTTTTCAAATTTCTAATTTAATTCTATA 415
consensus_6599#1      ------------------------------------------------------------
                                                                                  

consensus_6599#0      TGCCAAAATAGCAATGTTCTGAATTTCACAATAGTATATCTTTAAATCATCATACAATTA 475
consensus_6599#1      ------------------------------------------------------------
                                                                                  

consensus_6599#0      ATTTTGCCCTTTGGAATTTTAATTTTCAAGTTATACGTTATTCTGTTATATGAAATTCTA 535
consensus_6599#1      ------------------------------------------------------------
                                                                                  

consensus_6599#0      AATATAATGCTTATTTGAAGAGATTCCAGCTTTTAGTACACCATTTACAAAATTTTAAGC 595
consensus_6599#1      ------------------------------------------------------------
                                                                                  

consensus_6599#0      TCAGAGATCAAAGCATACTTACTTATACCTGTTATCCTTCAAGGAGGAGAATAGGCTACC 655
consensus_6599#1      ------------------------------------------------------------
                                                                                  

consensus_6599#0      CACCAACATCCCCAATCCAACCTTGTCTTCAGCAATCCTTTCCAGCTCCTTCCAATTGTT 715
consensus_6599#1      ------------------------------------------------------------
                                                                                  

consensus_6599#0      ATTCATTCTCTCCACGTCTCGGACCAAGTGTGTTTTTTGACTTTCCTCTTTTCCATTTAC 775
consensus_6599#1      ------------------------------------------------------------
                                                                                  

consensus_6599#0      CTTCAGGATTGCAAATTATCACTTGTCTCGTGATACAGTTTGATGATTTCCGTAATATAT 835
consensus_6599#1      ------------------------------------------------------------
                                                                                  

consensus_6599#0      GTTCTATCCACTTCCAACGTATTTTCCTA 864
consensus_6599#1      -----------------------------