These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_660#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence [TGGAATTAAATGNTGACGTACCAACTCCTGGCAAGAATACTGTATACTTAAAACAAGGAAAAAAGAAAAAAAGGAACAAGCCAAAGAGGGAGTAGCATTTTACCTTCTACAGTGACAGAGGAGATCTTTCTGACTCTCCCCCTGCTCCCCACCCAAAAAAGAAAAGTCTTGTTTCTCTGAGACATGGTCTTATGTAAGTAACCCACTCTGGGTTTGAATCCCATTCATAGCCAAGGATGCCCCTAGCTCCTATTGCTCCCACCTCAGTAATGCTGGGCAAATTGCACCTCCATGCTGGGTTCTCACTGACTTTAGATATTGTATATTTTTAGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCTTGGTGTCCTGGAACTCATCTTGCAGACCAGGCTGGCCTCAAACTCAGAGATTTGCCTGTCTCTGCTTTCTGAGGTTCTGGGATTAAG] [+] EMBL AI964730 [TGGAATTAAATGNTGACGTACCAACTCCTGGCAAGAATACTGTATACTTAAAACAAGGAAAAAAGAAAAAAAGGAACAAGCCAAAGAGGGAGTAGCATTTTACCTTCTACAGTGACAGAGGAGATCTTTCTGACTCTCCCCCTGCTCCCCACCCAAAAAAGAAAAGTCTTGTTTCTCTGAGACATGGTCTTATGTAAGTAACCCACTCTGGGTTTGAATCCCATTCATAGCCAAGGATGCCCCTAGCTCCTATTGCTCCCACCTCAGTAATGCTGGGCAAATTGCACCTCCATGCTGGGTTCTCACTGACTTTAGATATTGTATATTTTTAGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCTTGGTGTCCTGGAACTCATCTTGCAGACCAGGCTGGCCTCAAACTCAGAGATTTGCCTGTCTCTGCTTTCTGAGGTTCTGGGATTAAG] consensusID : consensus_660#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence [TGGAATTAAATGCGTGACGTAACCAACTCCTGGCAAGAATACTGTATACTTAAAAAAAAGAAAAAAAGAAAAAAAGGAACAAGCCAAAGAGGGAGTAGCATTTTACCTTCTACAGTGACAGAGGAGATCTTCTGACTTCCCCTGCTCCCCACCCAAAAAAGAAAGTCTTGTTTCTTGAGACATGGTCTTATGTAAGTAACCACTCTGGGTTTGAATCCCATCCATAGCCAAGGATGCCCCTAGCTCCTATTGCTCCCACCTTCACTAATGCGTGGGCAATTTGGCACTTCCATGGTGGGTTCTCACTTGCTTTAGATATTGGAAAATTTTTAAGTTTTTTTA] [+] EMBL AI974212 [TGGAATTAAATGCGTGACGTAACCAACTCCTGGCAAGAATACTGTATACTTAAAAAAAAGAAAAAAAGAAAAAAAGGAACAAGCCAAAGAGGGAGTAGCATTTTACCTTCTACAGTGACAGAGGAGATCTTCTGACTTCCCCTGCTCCCCACCCAAAAAAGAAAGTCTTGTTTCTTGAGACATGGTCTTATGTAAGTAACCACTCTGGGTTTGAATCCCATCCATAGCCAAGGATGCCCCTAGCTCCTATTGCTCCCACCTTCACTAATGCGTGGGCAATTTGGCACTTCCATGGTGGGTTCTCACTTGCTTTAGATATTGGAAAATTTTTAAGTTTTTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_660#0 TGGAATTAAATGN-TGACGTA-CCAACTCCTGGCAAGAATACTGTATACTTAAAACAAGG 58 consensus_660#1 TGGAATTAAATGCGTGACGTAACCAACTCCTGGCAAGAATACTGTATACTTAAAAAAAAG 60 ************ ******* ********************************* ** * consensus_660#0 AAAAAA-GAAAAAAAGGAACAAGCCAAAGAGGGAGTAGCATTTTACCTTCTACAGTGACA 117 consensus_660#1 AAAAAAAGAAAAAAAGGAACAAGCCAAAGAGGGAGTAGCATTTTACCTTCTACAGTGACA 120 ****** ***************************************************** consensus_660#0 GAGGAGATCTTTCTGACTCTCCCCCTGCTCCCCACCCAAAAAAGAAAAGTCTTGTTTCTC 177 consensus_660#1 GAGGAGATCTT-CTGACTT--CCCCTGCTCCCCACCCAAAAAAGAAA-GTCTTGTTTCT- 175 *********** ****** ************************** *********** consensus_660#0 TGAGACATGGTCTTATGTAAGTAACCCACTCTGGGTTTGAATCCCATTCATAGCCAAGGA 237 consensus_660#1 TGAGACATGGTCTTATGTAAGTAACC-ACTCTGGGTTTGAATCCCATCCATAGCCAAGGA 234 ************************** ******************** ************ consensus_660#0 TGCCCCTAGCTCCTATTGCTCCCACCT-CAGTAATGC-TGGGCAAATTG-CACCTCCATG 294 consensus_660#1 TGCCCCTAGCTCCTATTGCTCCCACCTTCACTAATGCGTGGGCAATTTGGCACTTCCATG 294 *************************** ** ****** ******* *** *** ****** consensus_660#0 CTGGGTTCTCACTGACTTTAGATATTGTATATTTTT--AGTTTTTTGAGACAGGGTTTCT 352 consensus_660#1 GTGGGTTCTCACTTGCTTTAGATATTGGAAAATTTTTAAGTTTTTTTA------------ 342 ************ ************ * * **** ******** * consensus_660#0 CTGTGTAGCCTTGGTGTCCTGGAACTCATCTTGCAGACCAGGCTGGCCTCAAACTCAGAG 412 consensus_660#1 ------------------------------------------------------------ consensus_660#0 ATTTGCCTGTCTCTGCTTTCTGAGGTTCTGGGATTAAG 450 consensus_660#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||