These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6616#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 575 fasta sequence [GAAGTCAGCAGTTTCATCTGATTTACGTAAAACCATAAGCGTCACTCGCTCACTCTTTTCCCTGGGGTGGATGATTCTATGTCGTA-AC-GGAAGAGCCCTGTTTGGTCCGTAATATGGATTATTCAGTTGTCATTTTTGATACAGCTCCTACTGGCCACACACTACGATTGTTAGCATTTCCAGAGGCTATGGAGAAAAGCCTTAGCAAAGTAGTATCGATGAAAAATCAGTTCGCTCCAATTTTAAATCAGTTAATGGGCCTGGTCGGAATGAACAGTACACAAGGGGGTGATTTAACAAATGCAATAGAAACACGTTTACCTATCGTTAAAGAAATAACAAAGCAGTTTAAAGATTCCACTCAGACTACATTTGTTTGTGTTTGCATACCAGAATTCTTAAGTATGTACGAAACGGAACGCTTAGTTCAAGAACTCACTGCACACGATATTGATGTCCACAATGTCATTGTNAATCAACTGTTGTTTCCGAATTTATTATCATCATGTGATGCCTCATCTAAAGATCACTCAAATGAACCTCCATCTACTTGTCGGATGTGCTTGGCACGTCAT] [+] EMBL CD059522 [GAAGTCAGCAGTTTCATCTGATTTACGTAAAACCATAAGCGTCACTCGCTCACTCTTTTCCCTGGGGTGGATGATTCTATGTCGTA ACTGGAAGAGCCCTGTTTGGTCCGTAATATGGATTATTCAGTTGTCATTTTTGATACAGCTCCTACTGGCCACACACTACGATTGTTAGCATTTCCAGAGGCTATGGAGAAAAGCCTTAGCAAAGTAGTATCGATGAAAAATCAGTTCGCTCCAATTTTAAATCAGTTAATGGGCCTGGTCGGAATGAACAGTACACAAGGGGGTGATTTAACAA ] [+] EMBL CD154347 [ aTATGTCGTATAC AGAGGTGTTTCGTTTGGTCCGTAATATGGATTATTCAGTTGTCATTTTTGATACAGCTCCTACTGGCCACACACTACGATTGTTAGCATTTCCAGAGGCTATGGAGAAAAGCCTTAGCAAAGTAGTATCGATGAAAAATCAGTTCGCTCCAATTTTAAATCAGTTAATGGGCCTGGTCGGAATGAACAGTACACAAGGGGGTGATTTAACAAATGCAATAGAAACACGTTTACCTATCGTTAAAGAAATAACAAAGCAGTTTAAAGATTCCACTCAGACTACATTTGTTTGTGTTTGCATACCAGAATTCTTAAGTATGTACGAAACGGAACGCTTAGTTCAAGAACTCACTGCA ] [+] EMBL CD110749 [ ATCAGTTAATGGGCCTAGTCGGAATGAACAGTACACAAGGGGGTGATTTAACAAATGCAATAGAAACACGTTTACCTATCGTTAAAGAAATAACAAAGCAGTTTAAAGATTCCACTCAGACTACATTTGTTTGTGTTTGCATACCAGAATTCTTAAGTATGTACGAAACGGAACGCTTAGTTCAAGAACTCACTGCACACGATATTGATGTCCACAATGTCATTGTNAATCAACTGTTGTTTCCGAATTTATTATCATCATGTGATGCCTCATCTAAAGATCACTCAAATGAACCTCCATCTACTTGTCGGATGTGCTTGGCACGTCAT] consensusID : consensus_6616#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 148 fasta sequence [CCAAGCACATCCGACAAGTAGATGGAGGTTCATTTGAGCTGCATCTTTAGATGAGGCATCACATGATGATAATAAATCGGAACACAGTGATTACATGCATGTGCATCATATCGGTGCAGTGGTCTGAGCTAGGCTCGTTGCTACATAC] [+] EMBL SMAA69263 [CCAAGCACATCCGACAAGTAGATGGAGGTTCATTTGAGCTGCATCTTTAGATGAGGCATCACATGATGATAATAAATCGGAACACAGTGATTACATGCATGTGCATCATATCGGTGCAGTGGTCTGAGCTAGGCTCGTTGCTACATAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6616#0 GAAGTCAGCAGTTTCATCTGATTTACGTAAAACCATAAGCGTCACTCGCTCACTCTTTTC 60 consensus_6616#1 ------------------------------------------------------------ consensus_6616#0 CCTGGGGTGGATGATTCTATGTCGTAACGGAAGAGCCCTGTTTGGTCCGTAATATGGATT 120 consensus_6616#1 ------------------------------------------------------------ consensus_6616#0 ATTCAGTTGTCATTTTTGATACAGCTCCTACTGGCCACACACTACGATTGTTAGCATTTC 180 consensus_6616#1 ------------------------------------------------------------ consensus_6616#0 CAGAGGCTATGGAGAAAAGCCTTAGCAAAGTAGTATCGATGAAAAATCAGTTCGCTCCAA 240 consensus_6616#1 ------------------------------------------------------------ consensus_6616#0 TTTTAAATCAGTTAATGGGCCTGGTCGGAATGAACAGTACACAAGGGGGTGATTTAACAA 300 consensus_6616#1 ------------------------------------------------------------ consensus_6616#0 ATGCAATAGAAACACGTTTACCTATCGTTAAAGAAATAACA-AAGCAGTTTAAAGATTCC 359 consensus_6616#1 ---------------------------CCAAGCACATCCGACAAGTAGATGGAGG--TTC 31 ** * ** * *** ** * * * * * consensus_6616#0 ACTCAGACTACATTTGTTTGTGTTTGCATACCAGAATTCTTAAGTATGTACGAAACGGAA 419 consensus_6616#1 ATTTGAGCTGCATCTTTAGATGAG-GCATCACATGATGATAATAAAT---CGGAACACAG 87 * * ** *** * * ** **** ** ** * * ** ** *** * consensus_6616#0 CGCTTAGTTCAAGAACTCACTGCACACGATATTGATGTCCACAATGTCATTGTNAATCAA 479 consensus_6616#1 TGATTA---CATGCA-----TGTGCATCATATCGGTG-CAGTGGTCTGAGC-TAGGCTCG 137 * *** ** * * ** ** **** * ** * * * * * consensus_6616#0 CTGTTGTTTCCGAATTTATTATCATCATGTGATGCCTCATCTAAAGATCACTCAAATGAA 539 consensus_6616#1 TTGCTACATAC------------------------------------------------- 148 ** * * * consensus_6616#0 CCTCCATCTACTTGTCGGATGTGCTTGGCACGTCAT 575 consensus_6616#1 ------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||