These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6617#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 608 fasta sequence [CCCAAGGTCACTTTATCGCCGCTCGAAAGCCTGTTTTTTTTGGTCATAGATCTCAAATCATTGAGAAACATGTTTTTGTATTTTTGTTTTTTTAAATGTAGGTTTTTTTAATAGCATTAACTTGATTATATCTGTGCGTTCCAATTTCCCAATATACAGAAATGTCTGGAGCTTTTGCGCAAAATAGCTCTAGATACGTAATCGCTCATGAAGCAACAAGTGCCAAGCGC-------CTTTTAGATGAGAATGAACATATCATCGAATTAGTTGCTGACCTTGCTAGAAAAGGTCGATTCCGTGAATCGGTCCAACTCCAGGCCGTTCTTCAACGTAATTTAGTTTATCTTGTGTCGTTAGTTGATCAGAATAACTTGGATTCAAAGCAGACAGTCGACACTGACACTTGCTAAATAAGTATCCTTTTATTCAGTGTAATTTACTTCAAGCTCAACTAATTCGGCTTCTATTACTTTTGCCACATGATCTTTCATTNTGATAAATTTATGTACACACTCTGTCATCCTACTGATCTTGCTGNTCATCATTTCTTTTGTTTCTTCTTTCAAGACAACCTTTGTTTTAATTCATCCTTTTGACATAATCAGAACTCT] [+] EMBL CD078976 [CCCAAGGTCACTTTATCGCCGCTCGAAAGCCTGTTTTTTTTGGTCATAGATCTCAAATCATTGAGAAACATGTTTTTGTATTTTTGTTTTTTTAAATGTAGGTTTTTTTAATAGCATTAACTTGATTATATCTGTGCGTTCCAATTTCCCAATATACAGAAATGTCTGGAGCTTTTGCGCAAAATAGCTCTAGATACGTAATCGCTCATGAAGCAACAAGTGCCAAGCGC CTTTTAGATGAGAATGAACATATCATCGAATTAGTTGCTGACCTTGCTAGAAAAGGTCGATTCCGTGAATCGGTCCAACTCCAGGCCGTTCTTCAACGTAATTTAGTTTATCTTGTGTCGTTAGTTGATCAGAATAACTTGGATTCAAAGCAGACAGTCGACACTGACACTTGCTAAATAAGTATCCTTTTATTCAGTGTAATTTACTTCAAGCTCAACTAATTCGGCTTCTATTACTTTTGCCACATGATCTTTCATTNTGATAAATTTATGTACACACTCTGTCATCCTACTGATCTTGCTGNTCATCATTTCTTTTGTTTCTTCTTTCAAGACAACCTTTGTTTTAATTCATCCTTTTGACATAATCAGAACTCT] [+] EMBL CD186493 [ ATAGCATTAACTTGATTATATCTGTGCGTTCCAATTTCCCAATATACAGAAATGTCTGGAGCTTTTGCGCAAAATAGCTCTAGATACGTAATCGCTCATGAAGCAACAAGTGCCAAGCGCCTCTTAGCTTTTAGATGAGAATGAACATATCATCGAATTAGTTGCTGACCTTGCTAGAAAAGGTCGATTCCGTGAATCGGTCCAACTCCAGGCCGTTCTTCAACGTAATTTAGTTTATCTTGTGTCGTTAGTTGATCAGAATAACTTGGATTCAAAGCAGACAGTCGACACTGACACTTGCTAAATAAGTATCCTTTTATTCAGTGTAATTTACTTCAAGCTCAACTAATTCGGCTTCT ] [+] EMBL CD071852 [ CGTTCTTCAACGTAATTTAGTTTATCTTGTGTCGTTAGTTGATCAGAATAACTTGGATTCAAAGCAGACAGTCGACACTGACACTTGCTAAATAAGTATCCTTTTATTCAGTGTAATTTACTTCAAGCTCAACTAATTCGGCTTCTATTACTTTTGCCACATGATCTTTCATTTTGA ] consensusID : consensus_6617#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence [CCTAGCTCTAGTAAATAGATGGACACTCCCAAGGTCACTTTATCGCCGCTCGAAAGCTGTTTTTTTTGGTCATAGATCTCAAATCATTGAGAAACATGTTTTTGTATTTTGTTTTTTTAAANGTAGGTTTTTTAATAGCATTAACTTGATTATATCTGTGCGTTCCAATTTCCCAATATACAGAAATGTCTGGAGCTTTTGCGCAAAATAGCTCTAGATACGTAATCGCTCATGAAGCAACAAGTGCCAAGCGCGTAAGTGCTCATAAATTGTCGTTCCTCAAGCTCTTAGCTTTTAGATGAGAATGAACATATCATCGAATTAGTTGCTGACCTTGCTAGAAAAGGTCGATTCCGTGAATCGGTCCAACTCCAGGCCGTTCTTCAACGTAATTTAGTTTATCTTGTGTCGTTAGTTGAT] [-] EMBL CD139649 [CCTAGCTCTAGTAAATAGATGGACACTCCCAAGGTCACTTTATCGCCGCTCGAAAGCTGTTTTTTTTGGTCATAGATCTCAAATCATTGAGAAACATGTTTTTGTATTTTGTTTTTTTAAANGTAGGTTTTTTAATAGCATTAACTTGATTATATCTGTGCGTTCCAATTTCCCAATATACAGAAATGTCTGGAGCTTTTGCGCAAAATAGCTCTAGATACGTAATCGCTCATGAAGCAACAAGTGCCAAGCGCGTAAGTGCTCATAAATTGTCGTTCCTCAAGCTCTTAGCTTTTAGATGAGAATGAACATATCATCGAATTAGTTGCTGACCTTGCTAGAAAAGGTCGATTCCGTGAATCGGTCCAACTCCAGGCCGTTCTTCAACGTAATTTAGTTTATCTTGTGTCGTTAGTTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6617#0 ---------------------------CCCAAGGTCACTTTATCGCCGCTCGAAAGCCTG 33 consensus_6617#1 CCTAGCTCTAGTAAATAGATGGACACTCCCAAGGTCACTTTATCGCCGCTCGAAAGC-TG 59 ****************************** ** consensus_6617#0 TTTTTTTTGGTCATAGATCTCAAATCATTGAGAAACATGTTTTTGTATTTTTGTTTTTTT 93 consensus_6617#1 TTTTTTTTGGTCATAGATCTCAAATCATTGAGAAACATGTTTTTGTATTTT-GTTTTTTT 118 *************************************************** ******** consensus_6617#0 AAATGTAGGTTTTTTTAATAGCATTAACTTGATTATATCTGTGCGTTCCAATTTCCCAAT 153 consensus_6617#1 AAANGTAGGTTTTTT-AATAGCATTAACTTGATTATATCTGTGCGTTCCAATTTCCCAAT 177 *** *********** ******************************************** consensus_6617#0 ATACAGAAATGTCTGGAGCTTTTGCGCAAAATAGCTCTAGATACGTAATCGCTCATGAAG 213 consensus_6617#1 ATACAGAAATGTCTGGAGCTTTTGCGCAAAATAGCTCTAGATACGTAATCGCTCATGAAG 237 ************************************************************ consensus_6617#0 CAACAAGTGCCAAGCGC-------------------------------------CTTTTA 236 consensus_6617#1 CAACAAGTGCCAAGCGCGTAAGTGCTCATAAATTGTCGTTCCTCAAGCTCTTAGCTTTTA 297 ***************** ****** consensus_6617#0 GATGAGAATGAACATATCATCGAATTAGTTGCTGACCTTGCTAGAAAAGGTCGATTCCGT 296 consensus_6617#1 GATGAGAATGAACATATCATCGAATTAGTTGCTGACCTTGCTAGAAAAGGTCGATTCCGT 357 ************************************************************ consensus_6617#0 GAATCGGTCCAACTCCAGGCCGTTCTTCAACGTAATTTAGTTTATCTTGTGTCGTTAGTT 356 consensus_6617#1 GAATCGGTCCAACTCCAGGCCGTTCTTCAACGTAATTTAGTTTATCTTGTGTCGTTAGTT 417 ************************************************************ consensus_6617#0 GATCAGAATAACTTGGATTCAAAGCAGACAGTCGACACTGACACTTGCTAAATAAGTATC 416 consensus_6617#1 GAT--------------------------------------------------------- 420 *** consensus_6617#0 CTTTTATTCAGTGTAATTTACTTCAAGCTCAACTAATTCGGCTTCTATTACTTTTGCCAC 476 consensus_6617#1 ------------------------------------------------------------ consensus_6617#0 ATGATCTTTCATTNTGATAAATTTATGTACACACTCTGTCATCCTACTGATCTTGCTGNT 536 consensus_6617#1 ------------------------------------------------------------ consensus_6617#0 CATCATTTCTTTTGTTTCTTCTTTCAAGACAACCTTTGTTTTAATTCATCCTTTTGACAT 596 consensus_6617#1 ------------------------------------------------------------ consensus_6617#0 AATCAGAACTCT 608 consensus_6617#1 ------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||