These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6621#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 667 fasta sequence [TCACCACCGTCTAGATTGCCCATTGCATCTATTTCATCTAAAAGACGAGCACGTCTGACCATAGGTCCAAGAAGAGTTGGACCACCAGATTCAGAGCGCTCGGAAACTTCTTTATAGACGACTTGAGCCACACGATGATAATGTGTTAGTGCTGCTTCACAATCTTCTTCAACACCAACACCGGTCCAGTAACGATAGCCCAAAGCCATGTCAGCAAAATTATCTCCTCCAAGACTCGAAAATGTTAAATATATCAATGCGTGTGGAATGCTTGCATTTACATGTAATCCAGACGCATACAAAAATCCAAGGCCAAACTGACCCCGAGGGTTGCCTTCATTGGAGAGCTCTTCGAACGCAGAATATGCGCTTTGAAAGGGATCTGCAGTGTAACCTCCAAGTAATGTGAGCATAGCCACCTGTTCCCTTGCTTTTGTATGCCCCTGTCTGGAAGCTTCGCTCAAGAGTTCCAGTGCGGTCTTATCAGCAGATGTCTTGTGACTTTCCGTCTCCAAAATACTCATAGCTTCGTCATACAAATGTTGAGCAACACTTGGTTCCGAATCTTCATGCTTATCAGGTGGTGAATGAATGCTTTTTACTGTTTTTTTCATCATTAATCGATGNGATGCTTTGGGAGGCCGGGACATTGTCCGCAGNTGAATCA] [+] EMBL CD097866 [TCACCACCGTCTAGATTGCCCATTGCATCTATTTCATCTAAAAGACGAGCACGTCTGACCATAGGTCCAAGAAGAGTTGGACCACCAGATTCAGAGCGCTCGGAAACTTCTTTATAGACGACTTGAGCCACACGATGATAATGTGTTAGTGCTGCTTCACAATCTTCTTCAACACCAACACCGGTCCAGTAACGATAGCCCAAAGCCATGTCAGCAAAATTATCTCCTCCAAGACTCGAAAATGTTAAATATATCAATGCGTGTGGAATGCTTGCATTTACATGTAATCCAGACGCATACAAAAATCCAAGGCCAAACTGACCCCGAGGGTTGCCTTCATTGGAGAGCTCTTCGAACGCAGAATATGCGCTTTGAAAGGGATCTGCAGTGTAACCTCCAAGTAATGTGAGCATAGCCACCTGTTCCCTTGCTTTTGTATGC ] [-] EMBL CD123060 [ AGAGCTCTTCGAACGCAGAATATGCGCTTTGAAAGGGATCTGCAGTGTAACCTCCAAGTAATGTGAGCATAGCCACCTGTTCCCTTGCTTTTGTATGCCCCTGTCTGGAAGCTTCGCTCAAGAGTTCCAGTGCGGTCTTATCAGCAGATGTCTTGTGACTTTCCGTCTCCAAAATACTCATAGCTTCGTCATACAAATGTTGAGCAACACTTGGTTCCGAATCTTCATGCTTATCAGGTGGTGAATGAATGCTTTTTACTGT ] [+] EMBL CD072241 [ TGCAGTGTAACCTCCAAGTAATGTGAGCATAGCCACCTGTTCCCTTGCTTTTGTATGCCCCTGTCTGGAAGCTTCGCTCAAGAGTTCCAGTGCAGTCTTATCAGCAGATGTCTTGTGACTTTCCGTCTCCAAAATACTCATAGCTTCGTCATACAAATGTTGAGCAACACTTGGTTCCGAATCTTCATGCTTATCAGGTGGTGAATGAATGCTTTTTACTGTTTTTTTCATCATTAATCGATGNGATGCTTTGGGAGGCCGGGACATTGTCCGCAGNTGAATCA] consensusID : consensus_6621#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 94 fasta sequence [CTTTTTGTAAGCCATAAACTGATAATATTGGAACAGATCCTCACTGATTGTAAGATCACCACCGTCTAGATCGCCCATTGCATCTATTTCATCT] [+] EMBL CD150376 [CTTTTTGTAAGCCATAAACTGATAATATTGGAACAGATCCTCACTGATTGTAAGATCACCACCGTCTAGATCGCCCATTGCATCTATTTCATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6621#0 TCACCACCGTCTAGATTGCCCATTGCATCTATTTCATCTAAAAGACGAGCACGTCTGACC 60 consensus_6621#1 --------------------------CTTTTTGTAAGCCATAAACTGATAATATTGGAAC 34 * * * * * * * ** ** * * ** * consensus_6621#0 ATAGGTCCAAGAAGAGTTGGACCACCAG-ATTCAGAGCGCTCG--GAAACTTCTTTATAG 117 consensus_6621#1 AGATCCTCACTGATTGTAAGATCACCACCGTCTAGATCGCCCATTGCATCTATTTCATCT 94 * * ** * ** ** ***** * *** *** * * * ** ** ** consensus_6621#0 ACGACTTGAGCCACACGATGATAATGTGTTAGTGCTGCTTCACAATCTTCTTCAACACCA 177 consensus_6621#1 ------------------------------------------------------------ consensus_6621#0 ACACCGGTCCAGTAACGATAGCCCAAAGCCATGTCAGCAAAATTATCTCCTCCAAGACTC 237 consensus_6621#1 ------------------------------------------------------------ consensus_6621#0 GAAAATGTTAAATATATCAATGCGTGTGGAATGCTTGCATTTACATGTAATCCAGACGCA 297 consensus_6621#1 ------------------------------------------------------------ consensus_6621#0 TACAAAAATCCAAGGCCAAACTGACCCCGAGGGTTGCCTTCATTGGAGAGCTCTTCGAAC 357 consensus_6621#1 ------------------------------------------------------------ consensus_6621#0 GCAGAATATGCGCTTTGAAAGGGATCTGCAGTGTAACCTCCAAGTAATGTGAGCATAGCC 417 consensus_6621#1 ------------------------------------------------------------ consensus_6621#0 ACCTGTTCCCTTGCTTTTGTATGCCCCTGTCTGGAAGCTTCGCTCAAGAGTTCCAGTGCG 477 consensus_6621#1 ------------------------------------------------------------ consensus_6621#0 GTCTTATCAGCAGATGTCTTGTGACTTTCCGTCTCCAAAATACTCATAGCTTCGTCATAC 537 consensus_6621#1 ------------------------------------------------------------ consensus_6621#0 AAATGTTGAGCAACACTTGGTTCCGAATCTTCATGCTTATCAGGTGGTGAATGAATGCTT 597 consensus_6621#1 ------------------------------------------------------------ consensus_6621#0 TTTACTGTTTTTTTCATCATTAATCGATGNGATGCTTTGGGAGGCCGGGACATTGTCCGC 657 consensus_6621#1 ------------------------------------------------------------ consensus_6621#0 AGNTGAATCA 667 consensus_6621#1 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||