These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6635#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 768 fasta sequence [GAAGGTTAGAAATAAATACTTGCAACTAAACTTCTCCAAATTTAGATCATTCAGTAAAGAAAATATACAGAAGAATCTAATGCTGCCATTTGCGCTTGATTATGTAGCCGAAGTGTAAGTCCAGCACCAAAGCCCATTCGACCTGGTATCATATTTAATGGTTCAAATGATTTGGTTTTTACATCAACCAATTTACTAAACAAGCAACTTGTAGCTCTCTGGTCAAAACCAGGTCCAAACACTGCAAATCGACAACGCTGACGGCTTATATCATTCGGATGTGAAGGATGGTAGATGGACAATCTACGTCTAAAATTATTCCACCACTTCCAAAATAATTCACAGAAAGATAAAGGACTAGTTGATTGACCTTCATGTGGGGCCGAAGCAAGACTAAGCTGATTGATCTTATTGATCAAAAGTTGGACTTTTGATGCTTCTTTCTGGTCACCAACTAAAAAAGCGATTATTCGACACCGTTTGATACCGGCTCAGTGGTCTAGAGGTTAAGCGTCCGCGCGCGAGACTGTTAGTTCCTGGGTCGGGATTCCGCGAGCGGGGTCGTGAGTGCGCACTGCTGAGGAGTTTCATCCTGGAGCGAGGCGGCCATCCAGTGCTTCCAGGTTTCTCATGGTGTTCTAGCTCGAATTGACTCATGAATTCAATTNTCCAACTTACTTATTTTTGTTNTATATTATTCATTACAGTGCATTTTTGATATGGCTATACTAAATGATTCAAATGTTTTTGGTATATAAAGACTCATTT] [+] EMBL CD080628 [GAAGGTTAGAAATAAATACTTGCAACTAAACTTCTCCAAATTTAGATCATTCAGTAAAGAAAATATACAGAAGAATCTAATGCTGCCATTTGCGCTTGATTATGTAGCCGAAGTGTAAGTCCAGCACCAAAGCCCATTCGACCTGGTATCATATTTAATGGTTCAAATGATTTGGTTTTTACATCAACCAATTTACTAAACAAGCAACTTGTAGCTCTCTGGTCAAAACCAGGTCCAAACACTGCAAATCGACAACGCTGACGGCTTATATCATTCGGATGTGAAGGATGGTAGATGGACAATCTACGTCTAAAATTATTCCACCACTTCCAAAATAATTCACAGAAAGATAAAGGACTAGTTGATTGACCTTCATGTGGGGCCGAAGCAAGACTAAGCTGATTGATCTTATTGATCAAAAGTTGGACTTTTGATGCTTCTTTCTGGTCACCAACTAAAAAAGCGATTATTCGACACCGTTTGATACCGGCTCAGTGGTCTAGAGGTTAAGCGTCCGCGCGCGAGACTGTTAGTTCCTGGGTCGGGATTCCGCGAGCGGGGTCGTGAGTGCGCACTGCTGAGGAGTTTCATCCTGGAGCGAGGCGGCCATCCAGTGCTTCCAGGTTTCTCATGGTGTTCTAGCTCGAATTGACTCATGAATTCAATTNTCCAACTTACTTATTTTTGTTNTATATTATTCATTACAGTGCATTTT ] [-] EMBL CD074537 [ CATTCGGATGTGAAGGATGGTAGATGGACAATCTACGTTTAAAATTATTCCCCCACTTCCAAAATAATTCCCAGAAAGATAAAGGACTAGTTGATTGCCCTTCATGTGGGGCCGAAGCAAGACTAAGCTGATTGATCTTATTGATCAAAAGTTGGACTTTTGATGCTTCTTTTTGGTCCCCAACTAAAAAAGCGATTATTCGACCCCGTTTGATACCGGCTCAGTGGTTTAAAGGTTAAGCGTCCGCGCGCGAGACTGTTAGTTCCTGGGTCGGGATTCCCCGAGCGGGGTCGTGAGTGCGCACTGCTGAGGAGTTTCATCCTGGAGCGAGGCGGCCATCCAGTGCTTCCAGGTTTTTCATGGTGTTTTAGCTCGAATTGACTCATGAATTCAATTTTCCAACTTACTTATTTTTGTTTTATATTATTCATTACAGTGCATTTTTGATATGGCTATACTAAATGATTCAAATGTTTTTGGTATATAAAGACTCATTT] consensusID : consensus_6635#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence [ACTCATTCTCCCCTTCGTGCTACGCTAGCACACGAAGTACCTTTTGGCTAGACACCAACCTCAACAGTTTTGTTGTGCGCATTAGTTAAATTACTTAAGAATCCGGGTTAGAGACATTGCTGATTTATCTATTTTTTAAACTGGTTTTCAGGTTCGAGATAACTCACTAGTCTATAAATGAAGGTTAGAAATAAATACTTGCAACTAAACTTCTCCAAATTTAGATCATTCAGTAAAGTAAGCGAAGAGTTTAGTTTTTCAATGCGTTATCTGTAATACATTTCATTTACAATTAAGTGCATGAACACCTGGAAAATGTATGCCTTTCAATAGAGACGTCTGTCTT] [+] EMBL CD078647 [ACTCATTCTCCCCTTCGTGCTACGCTAGCACACGAAGTACCTTTTGGCTAGACACCAACCTCAACAGTTTTGTTGTGCGCATTAGTTAAATTACTTAAGAATCCGGGTTAGAGACATTGCTGATTTATCTATTTTTTAAACTGGTTTTCAGGTTCGAGATAACTCACTAGTCTATAAATGAAGGTTAGAAATAAATACTTGCAACTAAACTTCTCCAAATTTAGATCATTCAGTAAAGTAAGCGAAGAGTTTAGTTTTTCAATGCGTTATCTGTAATACATTTCATTTACAATTAAGTGCATGAACACCTGGAAAATGTATGCCTTTCAATAGAGACGTCTGTCTT] consensusID : consensus_6635#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 338 fasta sequence [AAAGACAGACGTCTCTATTGAAAGGCATACATTTTCCAGGTGTTCATGCACTTAATTGTAAATGAAATGTATTACAGATAACGCATTGAAAAACTAAACTCTTCGCTTACTTTACTGAATGATCTAAATTTGGATAATTTTAGTTGCAAGTATTTATTTCTAACCTTCATTTATAGACTAGGGAGTTATCTCGAACCTGAAAACCAGTTTAAAAAATATATTAATCAACAATGTCTCTAACCCGGATTCTTAAATATTAAACTAATGCCCACAACAAACTGTTGAGGTTGGTGTTTACCCAAAAGTACTTCTTTTCTTCCGTCCCCAAAGGGAAAATA] [+] EMBL CD073111 [AAAGACAGACGTCTCTATTGAAAGGCATACATTTTCCAGGTGTTCATGCACTTAATTGTAAATGAAATGTATTACAGATAACGCATTGAAAAACTAAACTCTTCGCTTACTTTACTGAATGATCTAAATTTGGATAATTTTAGTTGCAAGTATTTATTTCTAACCTTCATTTATAGACTAGGGAGTTATCTCGAACCTGAAAACCAGTTTAAAAAATATATTAATCAACAATGTCTCTAACCCGGATTCTTAAATATTAAACTAATGCCCACAACAAACTGTTGAGGTTGGTGTTTACCCAAAAGTACTTCTTTTCTTCCGTCCCCAAAGGGAAAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6635#1 ------------------------------------------------------------ consensus_6635#2 ------------------------------------------------------------ consensus_6635#0 GAAGGTTAGAAATAAATACTTGCAACTAAACTTCTCCAAATTTAGATCATTCAGTAAAGA 60 consensus_6635#1 ------------------------------------------------------------ consensus_6635#2 ------------------------------------------------------------ consensus_6635#0 AAATATACAGAAGAATCTAATGCTGCCATTTGCGCTTGATTATGTAGCCGAAGTGTAAGT 120 consensus_6635#1 ------------------------------------------------------------ consensus_6635#2 ------------------------------------------------------------ consensus_6635#0 CCAGCACCAAAGCCCATTCGACCTGGTATCATATTTAATGGTTCAAATGATTTGGTTTTT 180 consensus_6635#1 -----------------------------------------------ACTCATTCTCCCC 13 consensus_6635#2 ---------------------------------------------------------AAA 3 consensus_6635#0 ACATCAACCAATTTACTAAACAAGCAACTTGTAGCTCTCTGGTCAAAACCAGGTCCAAAC 240 consensus_6635#1 TTCGTGCTACGCTAGCAC--ACGAAGTACCTTTT--GGCTAGACACCAACCTCAACAGTT 69 consensus_6635#2 GACAGACGTCTCTATTGA--AAGGCATACATTTTCCAGGTGTTCATGCACTTAATTGTAA 61 consensus_6635#0 ACTGCAAATCGACAACGCTGACGGCTTATATCATTCGGATGTGAAGGATGGTAGATGGAC 300 * * * * ** * * * * * * consensus_6635#1 TTGTTGTGCGCA---TTAGTTAAATTACTTAAGAATCCGGGTTAGAG----ACATTGCTG 122 consensus_6635#2 ATGAAATGTATT---ACAGATAACGCATTGAAAAACTAAACTCTTCGCT-TACTTTACTG 117 consensus_6635#0 AATCTACGTCTAAAATTATTCCACCACTTCCAAAATAATTCACAGAAAGATAAAGGACTA 360 * * * * * ** * ** consensus_6635#1 ATTTATCTATTTTTTAAACTGGTTTTCAGGTTCGAG-ATAACTCACTAGTCTA--TAAAT 179 consensus_6635#2 AATGATCTAAATTTGGA--TAATTTT-AGTTGCAAGTATTTATTTCTAACCTT--CATTT 172 consensus_6635#0 GTTGATTGACCTTCATG--TGGGGCCGAAGCAAGACTA-AGCTGATTGATCTTATTGATC 417 * ** * ** * * * * * * ** consensus_6635#1 GAAGGTTAGAAATAA-ATACTTGCAACTAAACTTC---TCCAAATTTAGATCATTCAGTA 235 consensus_6635#2 ATAGACTAGGGAGTT-AT-CTCGAACCTGAAAACCAGTTTAAAAAATATATTAATCAACA 230 consensus_6635#0 AAAAGTTGGACTTTTGATGCTTCTTTCTGGTCACCAA-CTAAAAAAGCGATTATTCGACA 476 * * * ** ** ** * *** ** * ** * consensus_6635#1 AAGTA-------AGCGAAGAGTTTAGTTTTTCAATGCGTTATCTGTAATACATTTCATTT 288 consensus_6635#2 ATGTCT----CTAACCCGGATTCTTAAATATTAAACTAATGCCCACAACAAACT--GTTG 284 consensus_6635#0 CCGTTTGATACCGGCTCAGTGGTCTAGAGGTTAAGCGTCCGCGCGCGAGACTGTTAGTTC 536 ** * * * ** * * * ** consensus_6635#1 ACAATTAAGTGCATGAACACCTGGAAAATGTATGCCTTTCAATAGAGACGTCTGTCTT-- 346 consensus_6635#2 AGGTTGGTGTTTACCCAAAAGTACTTCTTTTCTTCCGTCCCCAAAGGGAAAATA------ 338 consensus_6635#0 CTGGGTCGGGATTCCGCGAGCGGGGTCGTGAGTGCGCACTGCTGAGGAGTTTCATCCTGG 596 * * * * * * consensus_6635#1 ------------------------------------------------------------ consensus_6635#2 ------------------------------------------------------------ consensus_6635#0 AGCGAGGCGGCCATCCAGTGCTTCCAGGTTTCTCATGGTGTTCTAGCTCGAATTGACTCA 656 consensus_6635#1 ------------------------------------------------------------ consensus_6635#2 ------------------------------------------------------------ consensus_6635#0 TGAATTCAATTNTCCAACTTACTTATTTTTGTTNTATATTATTCATTACAGTGCATTTTT 716 consensus_6635#1 ---------------------------------------------------- consensus_6635#2 ---------------------------------------------------- consensus_6635#0 GATATGGCTATACTAAATGATTCAAATGTTTTTGGTATATAAAGACTCATTT 768 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||