These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6648#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 613 fasta sequence [AGTATAGATGTATATTTGTCTTGTAAAATAAGTCAATATAATTTTAAACAAATGGAAACAAATATTATATTTAACAGTATAATAATATTAGTAACTGAACGTCTGATCTAATTTCACATTAAGTAGATTGAAAGAAGCATATAAATTATTACGTAACTGTCTTTAAATTATTGATTAGTCAATAGGGTAATGTATATAATTTAATCAATCCCCATACTATGTGCAACAACTTCACGCCACATCTTTTGTACTGGAAGTGGATAGAATTCATTGTAAAATGATACTAAAAAGATACAGTCTGCAAGTAAACCTTCTTCTTTTGCAGGTTTCAAGTTCAAATAACTATGTCCATCTTGAAATCGCAACCTTGGTATACCTAGATTTTGGGCTAAAATTCCTGTTACATAGACATCATCTATCCATATAGGGGGTTGAAACATTGAACACCAATATAAGTAGGGTGCCAGTTTCATATCCATAATATATCCAAAACCTTCGCAATATGTTGGAAATATTTTTTCGGGATATTCTTTATCACTTATTTCCCACTTGGAATGTTTGATACTGTTTGGTCGTACAACCTTAATATTACTTGTAGCAGTACAGTAGAATA] [+] EMBL CD074046 [AGTATAGATGTATATTTGTCTTGTAAAATAAGTCAATATAATTTTAAACAAATGGAAACAAATATTATATTTAACAGTATAATAATATTAGTAACTGAACGTCTGATCTAATTTCACATTAAGTAGATTGAAAGAAGCATATAAATTATTACGTAACTGTCTTTAAATTATTGATTAGTCAATAGGGTAATGTATATAATTTAATCAATCCCCATACTATGTGCAACAACTTCACGCCACATCTTTTGTACTGGAAGTGGATAGAATTCATTGTAAAATGATACTAAAAAGATACAGTCTGCAAGTAAACCTTCTTCTTTTGCAGGTTTCAAGTTCAAATAACTATGTCCATCTTGAAATCGCAACCTTGGTATACCTAGATTTTGGGCTAAAATTCCTGTTACATAGACATCATCTATCCATATAGGGGGTTGAAACATTGAACACCAATATAAGTAGGGTGCCAGTTTCATATCCATAATATATCCAAAACCTTCGCAATATGTTGGAAATATTTTTTCGGGATATTCTTTATCACTTATTTCCCACTTGGAATGTTTGATACTGTTTGGTCGTACAACCTTAATATTACTTGTAGCAGTACAGTAGAATA] [+] EMBL CD073419 [AGTATAGATGTATATTTGTCTTGTAAAATAAGTCAATATAATTTTAAATAAATGGAAACAAATATTATATTTAACAGTATAATAATATTAGTAACTGAACGTTTGATCTAATTTCACATTAAGTAGATTGAAAGAAGCATATAAATTATTACGTAACTGTCTTTAAATTATTGATTAGTCAATAGGGTAATGTATATAATTTAATCAATCCCCATACTATGTGCAACAACTTCACGCCACATCTCTTGTACTGTAAGTGGATAGAATTCATTGTAAAATGATACTAAAAAGATACAGTCTGCAAGTAAACCTTCTTCTTTTGCAGGTTTCAAGTTCAAATAACTATGTCCATCTTGAAATCGCAACCTTGGTATACCTAGATTTTGTGCTAAAATTCCTGTTACATAGACATCATCTATCCATATAGGTGGTTGAAACATTGAACACCAATATAAGTAGGGTGCCAGTTTCATATCCATAATATATCCAAAACCTTCGCAATATGTTGGAAATATTTTTTCGGGATATTCTTTATCACTTATTTCCCACTTGGAATGTTTAATACTGTTTGGTCGTACAACCTTAATATTAC ] consensusID : consensus_6648#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 425 fasta sequence [TACGAGCCAANAATTTGGCACGAGGTTTATCAAGAATGGCCGACAACAATCCATAGGAAATTAGAGTTACATAATAAAAATTCAAATTTTAATGATATAAGTAAAGTATTTAATTTATGCGCCAAAAATAAAGATGCTATACCTATACTTATTGAAAATAGTGATTTTATATTTAGTCAATCAACATATTGTTATAAACAAACGAATCTATGGATATTAATCGCTGTACATACACATCCAAATCATCGTCAAAAAAGAGATTTAATTCGTGGAACATGGGGATCATTAAGACGTGTTAATAATCGTAAAATTGGTATTCTTTTTTTTATGGGTTTATCAAATGATTTAAAAGAACAAAAATTAATTGAAGAAGAAGAACGAATTTATGGTGACATTGTTCAACGAGCATTTCTGGAAAATTACTA] [+] EMBL CD079788 [TACGAGCCAANAATTTGGCACGAGGTTTATCAAGAATGGCCGACAACAATCCATAGGAAATTAGAGTTACATAATAAAAATTCAAATTTTAATGATATAAGTAAAGTATTTAATTTATGCGCCAAAAATAAAGATGCTATACCTATACTTATTGAAAATAGTGATTTTATATTTAGTCAATCAACATATTGTTATAAACAAACGAATCTATGGATATTAATCGCTGTACATACACATCCAAATCATCGTCAAAAAAGAGATTTAATTCGTGGAACATGGGGATCATTAAGACGTGTTAATAATCGTAAAATTGGTATTCTTTTTTTTATGGGTTTATCAAATGATTTAAAAGAACAAAAATTAATTGAAGAAGAAGAACGAATTTATGGTGACATTGTTCAACGAGCATTTCTGGAAAATTACTA] [+] EMBL CD078966 [ AAAAATTCAAATTTTAATGATATAAGTAAAGTATTTAATTTATGCGCCAAAAATAAAGATGCTATACCTATACTTATTGAAAATAGTGATTTTATATTTAGTCAATCAACATATTGTTATAAACAAACGAATCTATGGATATTAATCGCTGTACATACACATCCAAATCATCGTCAAAAAAGAGATTTAATTCGTGGAACATGGGGATCATTAAGACGTGTTAATAATCGTAAAATTGGTATTCTTTTTTTTATGGGTTTATCAAATGATTTAAAAGAACAAAAATTAATTGAAGAAGAAGAACGAATTTATGGTGACGTTGTTCAACGAGCATTTCTGGAAAATTACTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6648#0 AGTATAGATGTATATTTGTCTTGTAAAATAAGTCAATATAATTTTAAACAAATGGAAACA 60 consensus_6648#1 ------------------------------------------------------------ consensus_6648#0 AATATTATATTTAACAGTATAATAATATTAGTAACTGAACGTCTGATCTAATTTCACATT 120 consensus_6648#1 -------------------------------------TACGAGCCAAN-AATTTGGCACG 22 *** * ***** ** consensus_6648#0 AAGTAGATTGAAAGAAGCATATAA--ATTATTACGTAACTGTCTTTAAATTATTGATTAG 178 consensus_6648#1 AGGTTTATCAAGAATGGCCGACAACAATCCATAGGAAATTAGAGTTACAT-AATAAAAAT 81 * ** ** * * ** * ** ** ** * ** * *** ** * * * * consensus_6648#0 TCAA--TAGGGTAATGTATATAATTTAATCAATCCCCATACTATGTGCAACAACTTCACG 236 consensus_6648#1 TCAAATTTTAATGATATAAGTAAAGTATTTAATTTATGCGCCAAAAATAAAGATGCTATA 141 **** * * ** ** *** ** * *** * * ** * * consensus_6648#0 CCACATCTTTTGTACTGGAAGTGGATAGAATTCATTGTAAAATGATACTAAAAAGATACA 296 consensus_6648#1 CC-TATACT---TATTGAAAATAG-------TGATTTTATATTTAGTCAATCAACATATT 190 ** ** * ** ** ** * * * *** ** * * * * * ** *** consensus_6648#0 GTCTGCAAGTAAACCTTCTTCTTTTGCAGGTTTCAAGTTCAAATAACTATGTCCATCTTG 356 consensus_6648#1 GT-TATAAACAAAC-----GAATCTATGGATATTAATCGCTG-----TACATACACATCC 239 ** * ** **** * * * * * ** * ** * ** * consensus_6648#0 AAATCGCAACCTTGGTATACCTAGATTTTGGGCTAAAATTCCTGTTACATAGACATCATC 416 consensus_6648#1 AAATCATCGTCA----AAAAAGAGATTT--------AATTCGTGGAACATGGGGATCATT 287 ***** * * * ****** ***** ** **** * ***** consensus_6648#0 TATCCATATAGGGGGTTGAAACATTGAACACCAATATAAGTAGGGTGCCAGTTTCATATC 476 consensus_6648#1 AAGACGTGTTAATAATCGTAAAATTGG-TATTCTTTTTTTTATGGGTTTA---TCAAATG 343 * * * * * * ** **** * * * ** ** * *** ** consensus_6648#0 CATAATATATCCAAAACCTTCGCAATATGTTGGAAATATTTTTTCGGGATATTCTTTATC 536 consensus_6648#1 ATTTAAAAGAACAAAAATTAATTGAAGAAGAAGAACGAATTTATGGTGACATTGTTCAAC 403 * * * ***** * * *** * *** * * ** *** ** * * consensus_6648#0 ACTTATTTCCCACTTGGAATGTTTGATACTGTTTGGTCGTACAACCTTAATATTACTTGT 596 consensus_6648#1 GAGCATTTC-----TGGAAAATT-ACTA-------------------------------- 425 ***** ***** ** ** consensus_6648#0 AGCAGTACAGTAGAATA 613 consensus_6648#1 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||