These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6660#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 960 fasta sequence [CCTAATTTAGGATGTCGCTTAACACAGCTTACGCTAGTACAATACCAGCAGTTTTCAAGATCGTTGAGATTATTCTCAATATTATACTAATCATTCTTGTTGCTGTTTCACCTAATTACGTGATTCCTGGTCCTGGAGGATGGTTATTCTTCGTTGCAATCTTGACTACATTGATTTCATTGTTTTTCTATTGTATTCACCTAACGAATGCGATCTACAAATTTTCGGGGCCTATGACACTTATTGAATTTATATGCATCGCAATATGTTCAGGTTTTCATTTAATCGCTATGATTGTATGCGCGTGTACAGTATCAGGTTATGGGACGGCAATTGCTGCAGCTGTATTTTTCGCGATTAATTTTCTTCTTTATGGTGTCGATGCATTTTTCCTATTTGCATTATACCGAGTAAATGGTGCTTATTTACATGAACATACAAATCCAAATCCACAAATTGCTCCAAAAACAAATCAAATGCCAACTTATGAAAATACAGCTTATAATCCACAATAAATTCAAGACTCAACAATATGAAAAACACCCTCACACACAGAAGTAAATAAATGAGTGAAGCAATAACTAACTATATATTGAAAAAAAATTGAACATTNTATCAACANATTTTCACATATCAATTCATATAATAGATCATAACTATTTTCTCTCCCAAATTGAACTAACCATATCATAATTAACCTCAATACCTATATATACATTTNGTATATTAAAAAATTAATCGCTCACCGTACGTACTCTTTTCTTAGGCATGAATTAAACATATCAAGAATGGTATTTTATACTACTCCATTTTGCTATGTTGAGTAGATGCAAAAACAAAANAACCACCCATACTTCTTCTCCTTGCACCTACCCTATTCACCTTCCACTTAAAACATACTTCCCTCGCNGCCACTCTACACCCCCCGCTAGCTCACATACTCCTGGCGGTAATACTTCT] [+] EMBL CD079363 [CCTAATTTAGGATGTCGCTTAACACAGCTTACGCTAGTACAATACCAGCAGTTTTCAAGATCGTTGAGATTATTCTCAATATTATACTAATCATTCTTGTCGCCGTTTCACCTAATTACGTGATTCCTGGTCCTGGAGGATGGTTATTCTTCGTTGCAATCTTGACTACATTGATTTCATTGTTTTTCTATTGTATTCACCTAACGAATGCGATTTACAAATTTTCGGGGCCTATGACACTTATTGAATTTATATGCATCGCAATATGTTCAGGTTTTCATTTAATCGCTATGATTGTATGCGCGTGTACAGTATCAGGTTATGGGACGGCAATTGCTGCAGCTGTATTTTTCGCGATTAATTTTCTTCTTTATGGTGTCGATGCATTTTTCCTATTTGCATTATACCGAGTAAATGGTGCTTATTTACATGAACATACAAATCCAAATCCACAAATTGCTCCAAAAACAAATCAAATGCCAACTTATGAAAATACAGCTTATAATCCACAATAAATTCAAGACTCAACAATATGAAAAACACCCTCACACACAGAAGTAAATAAATGAGTGAAGCAATAACTAACTATATATTGAAAAAAAATTGAACATTNTATCAACANATTTTCACATATCAATTCATATAATAGATCATAACTATTTTCTCTCCCAAATTGAACTAACCATATCATAATTAACCTCAATACCTATATATACATTTNGTATATTAAAAAATTAATCGCTCACCGTACGTACTCTTTTCTTAGGCATGAATTAAACATATCAAGAATGGTATTTTATACTACTCCATTTTGCTATGTTGAGTAGATGCAAAAACAAAANAACCACCCATACTTCTTCTCCTTGCACCTACCCTATTCACCTTCCACTTAAAACATACTTCCCTCGCNGCCACTCTACACCCCCCGCTAGCTCACATACTCCTGGCGGTAATACTTCT] [+] EMBL AI977005 [ TTAACACAGCTTACGCTAGTACAATACCAGCAGTTTTCAAGATCGTTGAGATTATTCTCAATATTATACTAATCATTCTTGTTGCTGTTTCACCTAATTACGTGATTCCTGGTCCTGGAGGATGGTTATTCTTCGTTGCAATCTTGACTACATTGATTTCATTGTTTTTCTATTGTATTCACCTAACGAATGCGATCTACAAATTTTCGGGGCCTATGACACTTATTGAATTTATATGCATCGCAATATGTTCAGGTTTTCATTTAATCGCTATGATTGTATGCGCGTGTACAGTATCAGGTTATGGGACGGCAATTGCTGCAGCTGTATTTTTCGCGATTAATTTTCTTCTTTATGGTGTCGATGCATTTTTCCTATTTGCATTATACCGAGTAAATGGTGCTTATTTACATGAACATACAAATCCAAAT ] [+] EMBL AI067267 [ CAGCTTACGCTAGTACAATACCAGCAGTTTTCAAGATCGTTGAGATTATTCTCAATATTATACTAATCATTCTTGTTGCTGTTTCACCTAATTACGTGATTCCTGGTCCTGGAGGATGGTTATTCTTCGTTGCAATCTTGACTACATTGATTTCATTGTTTTTCTATTGTATTCACCTAACGAATGCGATCTACAAATTTTCGGGGCCTATGACACTTATTGAATTTATATGCATCGCAATATGTTCAGGTTTTCATTTAATCGCTATGATTGTATGCGCGTGTACAGTATCAGGTTATGGGACGGCAATTGCTGCAGCTGTATTTTTCGCGATTAATTTTCTTCTTTATGGTGTCGATGCATTTTTCCTATTTGCATTATACCGAGTAAATGGTGCTTATTTACATGAACATACAAATCCAAATCCACAAATTGCTCCAAAAACAAATCAAATGCCAACTTATGAAAATACAGCTTATAATCCACAATAAATTCAAGACTCAACAATATGAAAAACACCCTCACACACAGGAGTAAATAAATGAGTGAAGCATTAACTAACTATATATTGAAAAAAAATTGACCATTTTATCAACAAATTTTCACATAT ] consensusID : consensus_6660#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence [ACAAATCCAAATCCACAAATTGCTCCAAAAACAAATCAAATGCCAACTTATGAAAATACAGCTTATAATCCGCAATAAATTCAAGACTCACCAATATGAAAAACACCCTCACACACAGAAGTAAATAAATGAGTGAAGCAATAACTAACTATATATTGAAAAAAAATTGAACATTTTATCAACAAATTTTCACATATCAATTCATATAATAGATCATAACTATTTCCTCTCCCAAATTGAACTAACCATATCATAATTAACTCAATAACATATATATACATTTGTAATATTAAAAAAATTAATCGCTCACCGTACGTACTCTTTTCTAGGCATGAAATTAAACATATCAAGATTGTTATTTATACTACTCAATTTTGCTATGTTGAGTAGTTGTAGTAGTAGTAGTAGTACTACTACTACTACTACTGTCAACTAACAACTGTAACATTAAACTTATATACATATCTACACTGGGCTTCCATTTATACATATCGTATAACTGGTAATAATAATAATGATAATAAAACTTTTCAG] [-] EMBL CD073640 [ACAAATCCAAATCCACAAATTGCTCCAAAAACAAATCAAATGCCAACTTATGAAAATACAGCTTATAATCCGCAATAAATTCAAGACTCACCAATATGAAAAACACCCTCACACACAGAAGTAAATAAATGAGTGAAGCAATAACTAACTATATATTGAAAAAAAATTGAACATTTTATCAACAAATTTTCACATATCAATTCATATAATAGATCATAACTATTTCCTCTCCCAAATTGAACTAACCATATCATAATTAACTCAATAACATATATATACATTTGTAATATTAAAAAAATTAATCGCTCACCGTACGTACTCTTTTCTAGGCATGAAATTAAACATATCAAGATTGTTATTTATACTACTCAATTTTGCTATGTTGAGTAGTTGTAGTAGTAGTAGTAGTACTACTACTACTACTACTGTCAACTAACAACTGTAACATTAAACTTATATACATATCTACACTGGGCTTCCATTTATACATATCGTATAACTGGTAATAATAATAATGATAATAAAACTTTTCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6660#0 CCTAATTTAGGATGTCGCTTAACACAGCTTACGCTAGTACAATACCAGCAGTTTTCAAGA 60 consensus_6660#1 ------------------------------------------------------------ consensus_6660#0 TCGTTGAGATTATTCTCAATATTATACTAATCATTCTTGTTGCTGTTTCACCTAATTACG 120 consensus_6660#1 ------------------------------------------------------------ consensus_6660#0 TGATTCCTGGTCCTGGAGGATGGTTATTCTTCGTTGCAATCTTGACTACATTGATTTCAT 180 consensus_6660#1 ------------------------------------------------------------ consensus_6660#0 TGTTTTTCTATTGTATTCACCTAACGAATGCGATCTACAAATTTTCGGGGCCTATGACAC 240 consensus_6660#1 ------------------------------------------------------------ consensus_6660#0 TTATTGAATTTATATGCATCGCAATATGTTCAGGTTTTCATTTAATCGCTATGATTGTAT 300 consensus_6660#1 ------------------------------------------------------------ consensus_6660#0 GCGCGTGTACAGTATCAGGTTATGGGACGGCAATTGCTGCAGCTGTATTTTTCGCGATTA 360 consensus_6660#1 ------------------------------------------------------------ consensus_6660#0 ATTTTCTTCTTTATGGTGTCGATGCATTTTTCCTATTTGCATTATACCGAGTAAATGGTG 420 consensus_6660#1 ------------------------------------------------------------ consensus_6660#0 CTTATTTACATGAACATACAAATCCAAATCCACAAATTGCTCCAAAAACAAATCAAATGC 480 consensus_6660#1 -----------------ACAAATCCAAATCCACAAATTGCTCCAAAAACAAATCAAATGC 43 ******************************************* consensus_6660#0 CAACTTATGAAAATACAGCTTATAATCCACAATAAATTCAAGACTCAACAATATGAAAAA 540 consensus_6660#1 CAACTTATGAAAATACAGCTTATAATCCGCAATAAATTCAAGACTCACCAATATGAAAAA 103 **************************** ****************** ************ consensus_6660#0 CACCCTCACACACAGAAGTAAATAAATGAGTGAAGCAATAACTAACTATATATTGAAAAA 600 consensus_6660#1 CACCCTCACACACAGAAGTAAATAAATGAGTGAAGCAATAACTAACTATATATTGAAAAA 163 ************************************************************ consensus_6660#0 AAATTGAACATTNTATCAACANATTTTCACATATCAATTCATATAATAGATCATAACTAT 660 consensus_6660#1 AAATTGAACATTTTATCAACAAATTTTCACATATCAATTCATATAATAGATCATAACTAT 223 ************ ******** ************************************** consensus_6660#0 TTTCTCTCCCAAATTGAACTAACCATATCATAATTAACCTCAATACCTATATATACATTT 720 consensus_6660#1 TTCCTCTCCCAAATTGAACTAACCATATCATAATTAACTCAATAACATATATATACATTT 283 ** *********************************** * ** ************* consensus_6660#0 NGTATATTAAAAAA-TTAATCGCTCACCGTACGTACTCTTTTCTTAGGCATGAA-TTAAA 778 consensus_6660#1 GTAATATTAAAAAAATTAATCGCTCACCGTACGTACTCTTTTCT-AGGCATGAAATTAAA 342 *********** ***************************** ********* ***** consensus_6660#0 CATATCAAGAATGGTATTTTATACTACTCCATTTTGCTATGTTGAGTAGATGCAAAAACA 838 consensus_6660#1 CATATCAAGATTGTTATTT-ATACTACTCAATTTTGCTATGTTGAGTAGTTGTAGTAGTA 401 ********** ** ***** ********* ******************* ** * * * consensus_6660#0 AAANAACCACCCATACTTCTTCTCCTTGCACCTACCCTAT-TCACCTTCCACTTAAA-AC 896 consensus_6660#1 GTAGTAGTACTACTACTACTACTACTGTCAACTAACAACTGTAACATTAAACTTATATAC 461 * * ** **** ** ** ** ** *** * * * ** ** ***** * ** consensus_6660#0 ATACTTCC-CTCGCNGCCACTCTACACCCCCCGC-TAGCTCACA----TACTCCTGGCGG 950 consensus_6660#1 ATATCTACACTGGGCTTCCATTTATACATATCGTATAACTGGTAATAATAATAATGATAA 521 *** * * ** * * * ** ** ** ** ** * ** * ** consensus_6660#0 TAATACTTCT--- 960 consensus_6660#1 TAAAACTTTTCAG 534 *** **** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||