These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6687#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 629 fasta sequence [TTGNGCACGAGGGACCCTACTTCCAGTGATGACATTTACTGTCGTTTTAAATATCGTAATGTTATGCCAAATGATTTTGGCTTAAGCACGGAAGAAATATTAAAAGCTGATCCTAAAGAATTGAATGCATGGGTATCATTAAAACGTATCACAGCTTATTTGTCACATGATGAAGAAATAAAAGCCCAAGACCTATATAGTTCTAATTATCAAATGAAACGTAAAATGAGTGTTATAGGTTCATTAAATAATCCAAACGCTACTTGGTATCCTAATGAAAATCATGATATTGAAAGTAGTGAACCATCGAAAAAGAAGCGGAGACGTCATAAAAAGAAAAAATCACTTCATTCAGAGGCGCAGGGAGTCAAACTCAGTGATAATGGCAATAATAATAGCAACGGTGTTAATCCAATAGAACAAAATGAGAAAGATACCGAAAATTCAGAAAAGCTGATGAAATTAGGGAAAAAGAAAAAGAAGTATGTTAAAGACACGAACAAACTAAACATAAAAGATATCTTTAAATCTCGTCTTCAAGCAGCTGGTATAACCTTGAAAGAATATCATCGTACAATGCGGCGAGAAAACAGTTGTAAATCTGAAAGCGTCAATAAATAGATTATCAC] [+] EMBL CD079801 [TTGNGCACGAGGGACCCTACTTCCAGTGATGACATTTACTGTCGTTTTAAATATCGTAATGTTATGCCAAATGATTTTGGCTTAAGCACGGAAGAAATATTAAAAGCTGATCCTAAAGAATTGAATGCATGGGTATCATTAAAACGTATCACAGCTTATTTGTCACATGATGAAGAAATAAAAGACCAAGAACTATATAGTTCTAATTATCAAATGAAACGTAAAATGAGTGTTATAGGTTCATTAAATAATCCAAACGCTACTTGGTATCCTAATGAAAATCATGATATTGAAAGTAGTGAACCATCGAAAAAGAAGCGGAGACGTCATAAAAAGAAAAAATCACTTCATTCAGAGGCGCAGGGAGTCAAACTCAGTGATAATGGCAATAATAATAGCAACGGTGTTAATCCAATAGAACAAAATGAGAAAGATACCGAAAATTCAGAAAAGCTGATGAAATTAGGGAAAAAGAAAAAGAAGTATGTTAAAGACACGAACAAACTAAACATAAAAGATATCTTTAAATCTCGTCTTCAAGCAGCTGGTATAACCTTGAAAGAATATCATCGTACAATGCGGCGAGAAAACAGTTGTAAATCTGAAAGCGTCAATAAATAGATTATCA ] [-] EMBL CD074059 [ TACTTCCAGTGATGACATTTACTGTCGTTTCAAATATCGTAATGTTATGCCAAATGATTTTGGCTTAAGCACGGAAGAAATATTAAAAGCTGATCCTAAAGAATTGAATGCATGGGTATCATTAAAACGTATCACAGCTTATTTGTCACATGATGAAGAAATAAAAGCCCAAGACCTATATAGTTCTAATTATCAAATGAAACGTAAAATGAGTGTTATAGGTTCATTAAATAATCCAAACGCTACTTGGTATCCTAATGAAAATCATGATATTGAAAGTAGTGAACCATCGAAAAAGAAGCGGAGACGTCATAAAAAGAAAAAATCACTTCATTCAGAGGCGCAGGGAGTCAAACTCAGTGATAATGGCAATAATAATAGCAACGGTGTTAATCCAATAGAACAAAATGAGAAAGATACCGAAAATTCAGAAAAGCTGATGAAATTAGGGAAAAAGAAAAAGAAGTATGTTAAAGACACGAACAAACTAAACATAAAAGATATCTTTAAATCTCGTCTTCAAGCAGCTGGTATAACCTTGAAAGAATATCATCGTACAATGCGGCGAGAAAACAGTTGTAAATCTGAAAGCGTCAATAAATAGATTATCAC] [-] EMBL CD076556 [ TGAATGCATGGGTATCATTAAAACGTATCACAGCTTATTTGTCACATGATGAAGAAATAAAAGCCCAAGACCTATATAGTTCTAATTATCAAATGAAACGTAAAATGAGTGTTATAGGTTCATTAAATAATCCAAACGCTACTTGGTATCCTAATGAAAATCATGATATTGAAAGTAGTGACCCATCGAAAAAGAAGCGGAGACGTCATAAAAAGAAAAAATCACTTCATTCAGAGGCGCAGGGAGTCAAACTCAGTGATAATGGCAATAATAATAGCACCGGTGTTAATCCAATAGACCAAAATGAGAAAGATCCCGAAAATTCAGAAAAGCTGATGAAATTAGGGAAAAAGAAAAAGAAGTATGTTAAAGACACGACCAAACTAAACATAAAAGATATCTTTAAATCTCGTCTTCAAGCAGCTGGTATACCCTTGAAAGAATATCATCGTCCAATGCGGCGAGAAAACAGTTGTAAATCTGAAAGCGTCAATAAATAGATTATCAC] consensusID : consensus_6687#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 261 fasta sequence [CTGATGATTATCCAGACTATGAGAAATACTTTGAAGAATTTTATCAGTTACATTGTGAAGATATTATACCCGGTCCTACTTCCAGTGATGACATTTACTGTCGTTTCAAATATCGTAATGTTATGCCAAATGATTTTGGCTTAAGCACGGAAGAAATATTAAAAGCTGATCCTAAAGAATTGAATGCATGGGTATCATTAAAACGTATCACAGCTTATTTGTCACATGATGAAGAAATAAAAGACCNAGAACTATATAGTT] [+] EMBL CD139830 [CTGATGATTATCCAGACTATGAGAAATACTTTGAAGAATTTTATCAGTTACATTGTGAAGATATTATACCCGGTCCTACTTCCAGTGATGACATTTACTGTCGTTTCAAATATCGTAATGTTATGCCAAATGATTTTGGCTTAAGCACGGAAGAAATATTAAAAGCTGATCCTAAAGAATTGAATGCATGGGTATCATTAAAACGTATCACAGCTTATTTGTCACATGATGAAGAAATAAAAGACCNAGAACTATATAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6687#0 -----------------------------------------------------------T 1 consensus_6687#1 CTGATGATTATCCAGACTATGAGAAATACTTTGAAGAATTTTATCAGTTACATTGTGAAG 60 consensus_6687#0 TGNGCACGAGGGACCCTACTTCCAGTGATGACATTTACTGTCGTTTTAAATATCGTAATG 61 consensus_6687#1 ATATTATACCCGGTCCTACTTCCAGTGATGACATTTACTGTCGTTTCAAATATCGTAATG 120 * * ******************************** ************* consensus_6687#0 TTATGCCAAATGATTTTGGCTTAAGCACGGAAGAAATATTAAAAGCTGATCCTAAAGAAT 121 consensus_6687#1 TTATGCCAAATGATTTTGGCTTAAGCACGGAAGAAATATTAAAAGCTGATCCTAAAGAAT 180 ************************************************************ consensus_6687#0 TGAATGCATGGGTATCATTAAAACGTATCACAGCTTATTTGTCACATGATGAAGAAATAA 181 consensus_6687#1 TGAATGCATGGGTATCATTAAAACGTATCACAGCTTATTTGTCACATGATGAAGAAATAA 240 ************************************************************ consensus_6687#0 AAGCCCAAGACCTATATAGTTCTAATTATCAAATGAAACGTAAAATGAGTGTTATAGGTT 241 consensus_6687#1 AAGACCNAGAACTATATAGTT--------------------------------------- 261 *** ** *** ********** consensus_6687#0 CATTAAATAATCCAAACGCTACTTGGTATCCTAATGAAAATCATGATATTGAAAGTAGTG 301 consensus_6687#1 ------------------------------------------------------------ consensus_6687#0 AACCATCGAAAAAGAAGCGGAGACGTCATAAAAAGAAAAAATCACTTCATTCAGAGGCGC 361 consensus_6687#1 ------------------------------------------------------------ consensus_6687#0 AGGGAGTCAAACTCAGTGATAATGGCAATAATAATAGCAACGGTGTTAATCCAATAGAAC 421 consensus_6687#1 ------------------------------------------------------------ consensus_6687#0 AAAATGAGAAAGATACCGAAAATTCAGAAAAGCTGATGAAATTAGGGAAAAAGAAAAAGA 481 consensus_6687#1 ------------------------------------------------------------ consensus_6687#0 AGTATGTTAAAGACACGAACAAACTAAACATAAAAGATATCTTTAAATCTCGTCTTCAAG 541 consensus_6687#1 ------------------------------------------------------------ consensus_6687#0 CAGCTGGTATAACCTTGAAAGAATATCATCGTACAATGCGGCGAGAAAACAGTTGTAAAT 601 consensus_6687#1 ------------------------------------------------------------ consensus_6687#0 CTGAAAGCGTCAATAAATAGATTATCAC 629 consensus_6687#1 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||