These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6708#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 712 fasta sequence [TAACAGTAGTAGTCTTCGCTACTCTGGTCACGTTTATTTTCGTTTACTTGGTAATTGTTTCAAAGAAAACAACGGGTTTTTATTCAAAAATAACATTTTTTGCTTATTTCTTAAAGAAAATGGAAGACGACCATCTTAAAGATTTTTAAAAAAAAATAACAACAGTAAAACAAGTACAAGTAGTTTAGGGAGATAAAAATAAAATCAAAATTTCATGTTCAAGCATCTGATCATATTGACAGCTAACACAGCAAATATTGGAATAGTCACTAATCAATCAAGAAATGAAATTAAAAAAAAAGCCGTCAAACTCGAAATTATAGATTCAAAAATAGTATATAGTGTCTACAGATTAAAGAATATGACAATATAATAACGAAACTATTTGTAATGTGGAAACTGATTCCTGTTGTAGAGGCAAAAGATATTGTGTCACTTAATTCGATAATTGATATGCATATGCTTCGAACTGTCATCATTACAAGTTATATATATGGTTGTATTACCCAAGAAGAATCACAACTCTCTTGTACAATATTATAAACTGATACAATAAACTAACGAACATGAATACTAAATAATTAATATAGTTGGAATGTATTAGGTCACTAAGGAAAATTAATAATTTTTATACTTTTTTTTTAAAGTATACAAAAATAAACAAGTTGGTTTATGAAGGAAGTTGAAATCTTTGGTGCAGTGTGTACCACAC] [+] EMBL CD074355 [TAACAGTAGTAGTCTTCGCTACTCTGGTCACGTTTATTTTCGTTTACTTGGTAATTGTTTCAAAGAAAACAACGGGTTTTTATTCAAAAATAACATTTTTTGCTTATTTCTTAAAGAAAATGGAAGACGACCATCTTAAAGATTTTTAAAAAAAAATAACAACAGTAAAACAAGTACAAGTAGTTTAGGGAGATAAAAATAAAATCAAAATTTCATGTTCAAGCATCTGATCATATTGACAGCTAACACAGCAAATATTGGAATAGTCACTAATCAATCAAGAAATGAAATTAAAAAAAAAGCCGTCAAACTCGAAATTATAGATTCAAAAATAGTATATAGTGTCTACAGATTAAAGAATATGACAATATAATAACGAAACTATTTGTAATGTGGAAACTGATTCCTGTTGTAGAGGCAAAAGATATTGTGTCACTTAATTCGATAATTGATATGCATATGCTTCGAACTGTCATCATTACAAGTTATATATATGGTTGTATTACCCAAGAAGAATCACAACTCTCTTGTACAATATTATAAACTGATACAATAAACTAACGAACATGAATACTAAATAATTAATATAGTTGGAATGTATTAGGTCACTAAGGAAAATTAATAATTTTTATACTTTTTTTTTAAAGTATACAAAAATAAACAAGTTGGTTTATGAA ] [+] EMBL CD076512 [ taAACATTTTTTGCTTATTTCTTAAAGAAAATGGAAGACGACCATCTTAAAGATTTTTAAAAAAAAATAACAACAGTAAAACAAGTACAAGTAGTTTAGGGAGATAAAAATAAAATCAAAATTTCATGTTCAAGCATCTGATCATATTGACAGCTAACACAGCAAATATTGGAATAGTCACTAATCAATCAAGAAATGAAATTAAAAAAAAAGCCGTCAAACTCGAAATTATAGATTCAAAAATAGTATATAGTGTCTACAGATTAAAGAATATGACAATATAATAACGAAACTATTTGTAATGTGGAAACTGATTCCTGTTGTAGAGGCAAAAGATATTGTGTCACTTAATTCGATAATTGATATGCATATGCTTCGAACTGTCATCATTACAAGTTATATATATGGTTGTATTACCCAAGAAGAATCACAACTCTCTTGTACAATATTATAAACTGATACAATAAACTAACGAACATGAATACTAAATAATTAATATAGTTGGAATGTATTAGGTCACTAAGGAAAATTAATAATTTTTATACTTTTTTTTTAAAGTATACAAAAATAAACAAGTTGGTTTATGAAGGAAGTTGAAATCTTTGGTGCAGTGTGTACCACAC] consensusID : consensus_6708#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 351 fasta sequence [GCCTCTTTGTTTTGAAATAAAAACACACTGCACTCCTGTCATTAGTGTGGGGGAGAGAATAAAACAAAATATATACAGCTGTGCTACTGTCGGCTGCACCACCACTATCGTGTATCGCTAATCATCCTCGAGATGAGATATAAAAAAAGCCGTCGTCACTCGAGATATAGAGTCTCAAATAGTATATAGTGTCTACAGATTAAAGAATATGACCATATAATAACGAAACTATTTGTAATGTGGAAACTGATTCCTGTTGTAGAGGCAAAAGATATTGTGTCACTTAATTCGATAATTGATATGCATATGCTTCGAACTGTCATCATTACAAGTTATATATATGGTTGTATT] [-] EMBL AI444556 [GCCTCTTTGTTTTGAAATAAAAACACACTGCACTCCTGTCATTAGTGTGGGGGAGAGAATAAAACAAAATATATACAGCTGTGCTACTGTCGGCTGCACCACCACTATCGTGTATCGCTAATCATCCTCGAGATGAGATATAAAAAAAGCCGTCGTCACTCGAGATATAGAGTCTCAAATAGTATATAGTGTCTACAGATTAAAGAATATGACCATATAATAACGAAACTATTTGTAATGTGGAAACTGATTCCTGTTGTAGAGGCAAAAGATATTGTGTCACTTAATTCGATAATTGATATGCATATGCTTCGAACTGTCATCATTACAAGTTATATATATGGTTGTATT] [-] EMBL AI447083 [GCCTCTTTGTTTTGAAATAAAAACACACTGCACTCCTGTCATTAGTGTGGGGGAGAGAATAAAACAAAATATATACAGCTGTGCTACTGTCGGCTGCACCACCACTATCGTGTATCGCTAATCATCCTCGAGATGAGATATAAAAAAAGCCGTCGTCACTCGAGATATAGAGTCTCAAATAGTATATAGTGTCTACAGATTAAAGAATATGACCATATAATAACGAAACTATTTGTAATGTGGAAACTGATTCCTGTTGTAGAGGCAAAAGATATTGTGTCACTTAATTCGATAATTGATATGCATATGCTTCGAACTGTCATCATTACAAGTTATATATATGGTTGTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6708#0 TAACAGTAGTAGTCTTCGCTACTCTGGTCACGTTTATTTTCGTTTACTTGGTAATTGTTT 60 consensus_6708#1 ------------------------------------------------------------ consensus_6708#0 CAAAGAAAACAACGGGTTTTTATTCAAAAATAACATTTTTTGCTTATTTCTTAAAGAAAA 120 consensus_6708#1 ------------------------------------------------------------ consensus_6708#0 TGGAAGACGACCATCTTAAAGATTTTTAAAAAAAAATAACAACA-GTAAAACAAGTACAA 179 consensus_6708#1 -------------------GCCTCTTTGTTTTGAAATAAAAACACACTGCACTCCTGTCA 41 * *** ****** **** ** * * consensus_6708#0 GTAGTTTAGGGAGATAAAAATAAAATCAAAATTTCATGTTCAAGCATCTGATCATATTGA 239 consensus_6708#1 TTAGTGTGGGGGA--GAGAATAAAA-CAAAATAT-------ATACAGCTG-TGCTACTGT 90 **** * *** * ******* ****** * * ** *** * ** ** consensus_6708#0 CAGCTAACACAGCAAATATTGGAATAGTCACTAATCAATCAAGAAATGAAATTAAAAAAA 299 consensus_6708#1 CGGCTG-CACCACCACTATCGTG--TATCGCTAATCATCCTCGAGATGAGAT-ATAAAAA 146 * *** *** * * *** * ** ******* * ** **** ** * ***** consensus_6708#0 AAGCCGTCAA-ACTCGAAATTATAGATTCAAAAATAGTATATAGTGTCTACAGATTAAAG 358 consensus_6708#1 AAGCCGTCGTCACTCGAGAT-ATAGAGTCTCAAATAGTATATAGTGTCTACAGATTAAAG 205 ******** ****** ** ***** ** ***************************** consensus_6708#0 AATATGACAATATAATAACGAAACTATTTGTAATGTGGAAACTGATTCCTGTTGTAGAGG 418 consensus_6708#1 AATATGACCATATAATAACGAAACTATTTGTAATGTGGAAACTGATTCCTGTTGTAGAGG 265 ******** *************************************************** consensus_6708#0 CAAAAGATATTGTGTCACTTAATTCGATAATTGATATGCATATGCTTCGAACTGTCATCA 478 consensus_6708#1 CAAAAGATATTGTGTCACTTAATTCGATAATTGATATGCATATGCTTCGAACTGTCATCA 325 ************************************************************ consensus_6708#0 TTACAAGTTATATATATGGTTGTATTACCCAAGAAGAATCACAACTCTCTTGTACAATAT 538 consensus_6708#1 TTACAAGTTATATATATGGTTGTATT---------------------------------- 351 ************************** consensus_6708#0 TATAAACTGATACAATAAACTAACGAACATGAATACTAAATAATTAATATAGTTGGAATG 598 consensus_6708#1 ------------------------------------------------------------ consensus_6708#0 TATTAGGTCACTAAGGAAAATTAATAATTTTTATACTTTTTTTTTAAAGTATACAAAAAT 658 consensus_6708#1 ------------------------------------------------------------ consensus_6708#0 AAACAAGTTGGTTTATGAAGGAAGTTGAAATCTTTGGTGCAGTGTGTACCACAC 712 consensus_6708#1 ------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||