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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6732#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 847 fasta sequence
[TCCAGGCCAANAATTTGGCACGAGGTGTAGATTGAGGGTGTTTAGAAGAAGCATCCGATTGCCTTCATACTCCAGTATATCTGTGGTGGACCAAAAAGTATATTAATCAAAAATAGTGACAAAGGTATTACGTCCAAAAGTTTATGTAACAATAAACAACTTATAAGTTATTAACACAAACAAAAGTTTAGGGACGTAACTTAAATTGGCTGGCTATTGCGTGTTCCGTTGCGCTTGGTCCCGAAAATCCACAATTATGGATAATTAATAATTCCAATGAGATAGAATATGGCTCCAATAAGTTGGCCAAACGTAGAACGTAATGATAGTCAATTAATAGTTCAGTTAACATATCCACAGGCACAATAGAACTAGGTATGTGTGTATAATAGTGTATTTATTAATGAGCAGTTACAATGTCATGCTATGTTGAATTCAAAAGCCGGCAGGAAGTTAGTTAGTAAGTGTTCAAGGTCATACACTTAAACAACAAGCACAATTGTTTAGTGATAAATGTACACAATGTGAAAATAAACAAAATAAATGCAAAAGCTATCAAAAAATTGTTTACAAAATAGGTTTAATAAGCTTATCTCCACATATCTGACAGTACGACTTCTCTCATAGACTATGGGGTTACCTTTCTTTTTTGAGTGTTACTGTTCTCCAGCCAAATTATCCTGTTATGATAGCAACTAAAGAGATCAGTTTTCTACTCAATATTAAATCATTTAGGTAGTCTCAAACCCAACTATCACATCCACGTAGCAACTATAATCGAGATTTAACTATA-TCTTTATCGTAATTTGTTCCTATTTTTTTGACTTACCTTTCAATCGATCATGTT]
[+] EMBL CD081105 [TCCAGGCCAANAATTTGGCACGAGGTGTAGATTGAGGGTGTTTAGAAGAAGCATCCGATTGCCTTCATACTCCAGTATATCTGTGGTGGACCAAAAAGTATATTAATCAAAAATAGTGACAAAGGTATTACGTCCAAAAGTTTATGTAACAATAAACAACTTATAAGTTATTAACACAAACAAAAGTTTAGGGACGTAACTTAAATTGGCTGGCTATTGCGTGTTCCGTTGCGCTTGGTCCCGAAAATCCACAATTATGGATAATTAATAATTCCAATGAGATAGAATATGGCTCCAATAAGTTGGCCAAACGTAGAACGTAATGATAGTCAATTAATAGTTCAGTTAACATATCCACAGGCACAATAGAACTAGGTATGTGTGTATAATAGTGTATTTATTAATGAGCAGTTACAATGTCATGCTATGTTGAATTCAAAAGCCGGCAGGAAGTTAGTTAGTAAGTGTTCAAGGTCATACACTTAAACAACAAGCACAATTGTTTAGTGATAAATGTACACAATGTGAAAATAAACAAAATAAATGCAAAAGCTATCAAAAAATTGTTTACAAAATAGGTTTAATAAGCTTATCTCCACATATCTGACAGTACGACTTCTCTCATAGACTATGGGGTTACCTTTCTTTTTTGAGTGTTACTGTTCTCCAGCCAAATTATCCTGTTATGATAGCAACTAAAGAGATCAGTTNTCTACTCAATATTAAATCATTTANGTAGTCTCAAACCC ACTATCACATCCACGTAGCAACTATAATCGAGA TTAACTATANTC TTATCGAANTTNNGTCCTATNNTTTTGACTTACTTTTC ATCGATCAT ]
[-] EMBL CD074928 [ TGCGCTTGGTCCCGAAAATCCACAATTATGGATAATTAATAATTCCAATGAGATAGAATATGGCTCCAATAAGTTGGCCAAACGTAGAACGTAATGATAGTCAATTAATAGTTCAGTTAACATATCCACAGGCACAATAGAACTAGGTATGTGTGTATAATAGTGTATTTATTAATGAGCAGTTACAATGTCATGCTATGTTGAATTCAAAAGCCGGCAGGAAGTTAGTTAGTAAGTGTTCAAGGTCATACACTTAAACAACAAGCACAATTGTTTAGTGATAAATGTACACAATGTGAAAATAAACAAAATAAATGCAAAAGCTATCAAAAAATTGTTTACAAAATAGGTTTAATAAGCTTATCTCCACATATCTGACAGTACGACTTCTCTCATAGACTATGGGGTTACCTTTCTTTTTTGAGTGTTACTGTTCTCCAGCCAAATTATCCTGTTATGATAGCAACTAAAGAGATCAGTTTTCTACTCAATATTAAATCATTTAGGTAGTCTCAAACCCAACTATCACATCCACGTAGCAACTATAATCGAGATTTAACTATA TCTTTATCGTAATTTGTTCCTATTTTTTTGACTTACCTTTCAATCGATCATGT ]
[+] EMBL SMAA8329 [ CAAGGTCATACACTTAAACAACAAGCACAATTGTTTAGTGATAAATGTACACAATGTGAAAATAAACAAAATAAATGCAAAAGCTATCAAAAAATTGTTTACAAAATAGGTTTAATAAGCTTATCTCCACATATCTGACAGTACGACTTCTCTCNTAGACTATGGGGTTACCTTTCCTTTTTGAGTGTTACTGTTCTCCAGCCAAATTATCCTGTTATGATAGCCACTAAAGAGATCAGTTTTCCACTCCATATTAAATCNTTTAGGTAGTCTCAAACCCAACTATCACATCCACGTAGCAACTATAATCGAGATTTAACTATA TCTTTATCGTAATTTGTTCCCATTTTTTTGACTTACCTTTCAATCGATCATGTT]
consensusID : consensus_6732#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence
[GTTCTTGCTAGAAATCAAAAGTTGTCTGAGCATAGTCTCTGTTATCTGTTCAGTGAGCTGATATTTTGAAAAACTTACCTACTTGTCTCCCATTTTGTCTTGCAAGTGTGACATTTTTAGAATCAATCTTTTCCAACCCATTCCTACCATTGTCAAGAGAGCCAGAATCGTTGTAGATTGAGGGTGTTTAGAAGAAGCATCCGATTGCCTTCATACTCCAGTATATCTGTGGTGGACCAAAAAGTATATTAATCAAAAATAGTGACAAAGGTATTACGTCCAAAAGTTTATGTAACAATAAACAACTCATAAGTTATTAACACAAACAAAAGTTTAGGGACGTAACTTAAATTGGCTGGCTATTGCGTGTTCCGTTGCGCTTGGTCCCGAAAATCCACAATTATGGATAATTAATAATTCCAATGAGATAGAATATGGCTCCAATAAGTTGGCCAAACGTAGAACGTAATGATAGTCAATTAATAGTTCAGT]
[-] EMBL CD112483 [GTTCTTGCTAGAAATCAAAAGTTGTCTGAGCATAGTCTCTGTTATCTGTTCAGTGAGCTGATATTTTGAAAAACTTACCTACTTGTCTCCCATTTTGTCTTGCAAGTGTGACATTTTTAGAATCAATCTTTTCCAACCCATTCCTACCATTGTCAAGAGAGCCAGAATCGTTGTAGATTGAGGGTGTTTAGAAGAAGCATCCGATTGCCTTCATACTCCAGTATATCTGTGGTGGACCAAAAAGTATATTAATCAAAAATAGTGACAAAGGTATTACGTCCAAAAGTTTATGTAACAATAAACAACTCATAAGTTATTAACACAAACAAAAGTTTAGGGACGTAACTTAAATTGGCTGGCTATTGCGTGTTCCGTTGCGCTTGGTCCCGAAAATCCACAATTATGGATAATTAATAATTCCAATGAGATAGAATATGGCTCCAATAAGTTGGCCAAACGTAGAACGTAATGATAGTCAATTAATAGTTCAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6732#0 ------------------------------------------------------------
consensus_6732#1 GTTCTTGCTAGAAATCAAAAGTTGTCTGAGCATAGTCTCTGTTATCTGTTCAGTGAGCTG 60
consensus_6732#0 ------------------------------------------------------------
consensus_6732#1 ATATTTTGAAAAACTTACCTACTTGTCTCCCATTTTGTCTTGCAAGTGTGACATTTTTAG 120
consensus_6732#0 --------------------------TCCAGGCCAANAATTTGGCACGAGGTGTAGATTG 34
consensus_6732#1 AATCAATCTTTTCCAACCCATTCCTACCATTGTCAAGAGAGCCAGAATCGTTGTAGATTG 180
* * *** * * * *********
consensus_6732#0 AGGGTGTTTAGAAGAAGCATCCGATTGCCTTCATACTCCAGTATATCTGTGGTGGACCAA 94
consensus_6732#1 AGGGTGTTTAGAAGAAGCATCCGATTGCCTTCATACTCCAGTATATCTGTGGTGGACCAA 240
************************************************************
consensus_6732#0 AAAGTATATTAATCAAAAATAGTGACAAAGGTATTACGTCCAAAAGTTTATGTAACAATA 154
consensus_6732#1 AAAGTATATTAATCAAAAATAGTGACAAAGGTATTACGTCCAAAAGTTTATGTAACAATA 300
************************************************************
consensus_6732#0 AACAACTTATAAGTTATTAACACAAACAAAAGTTTAGGGACGTAACTTAAATTGGCTGGC 214
consensus_6732#1 AACAACTCATAAGTTATTAACACAAACAAAAGTTTAGGGACGTAACTTAAATTGGCTGGC 360
******* ****************************************************
consensus_6732#0 TATTGCGTGTTCCGTTGCGCTTGGTCCCGAAAATCCACAATTATGGATAATTAATAATTC 274
consensus_6732#1 TATTGCGTGTTCCGTTGCGCTTGGTCCCGAAAATCCACAATTATGGATAATTAATAATTC 420
************************************************************
consensus_6732#0 CAATGAGATAGAATATGGCTCCAATAAGTTGGCCAAACGTAGAACGTAATGATAGTCAAT 334
consensus_6732#1 CAATGAGATAGAATATGGCTCCAATAAGTTGGCCAAACGTAGAACGTAATGATAGTCAAT 480
************************************************************
consensus_6732#0 TAATAGTTCAGTTAACATATCCACAGGCACAATAGAACTAGGTATGTGTGTATAATAGTG 394
consensus_6732#1 TAATAGTTCAGT------------------------------------------------ 492
************
consensus_6732#0 TATTTATTAATGAGCAGTTACAATGTCATGCTATGTTGAATTCAAAAGCCGGCAGGAAGT 454
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 TAGTTAGTAAGTGTTCAAGGTCATACACTTAAACAACAAGCACAATTGTTTAGTGATAAA 514
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 TGTACACAATGTGAAAATAAACAAAATAAATGCAAAAGCTATCAAAAAATTGTTTACAAA 574
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 ATAGGTTTAATAAGCTTATCTCCACATATCTGACAGTACGACTTCTCTCATAGACTATGG 634
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 GGTTACCTTTCTTTTTTGAGTGTTACTGTTCTCCAGCCAAATTATCCTGTTATGATAGCA 694
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 ACTAAAGAGATCAGTTTTCTACTCAATATTAAATCATTTAGGTAGTCTCAAACCCAACTA 754
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 TCACATCCACGTAGCAACTATAATCGAGATTTAACTATATCTTTATCGTAATTTGTTCCT 814
consensus_6732#1 ------------------------------------------------------------
consensus_6732#0 ATTTTTTTGACTTACCTTTCAATCGATCATGTT 847
consensus_6732#1 ---------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||