These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6733#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 619 fasta sequence [AAATTTATTGTTCACATAAATATAATACACAATTACAGGAACTGATTATTTACAAATGTGTACAACGGTCACTTTGATCTCTTACCAAAACCACCAAATCCCATAGCTGCTGCGACGTCAGAATCTTCAAACTGTTCGTCATTTCTACGCCTTTTCTCTTTGCGTTTTTCTTGCTTATAAGCCCTAAATTTCTCTTCTTCCTCAGCGATTTGTCTCATTCTTTCATCTAAACTGTACTCTTCTGCCTTTTCTTCAGATTTTTGCTTGTGAAGCTGAAACCTTTCTTTAACTTCTTCTAAAGTTGACCTTTTAATTCTCATCGACATTCCCATATTCCTTTGATGTTTTTTACCATTTATATGGTCCAAATAGTTAATTGAATCTTTCACAACACAGTCACAAACTTCACAGTAGTAGCCTGCTTGTGAAGATCCTGGTCCGGTCTTTGCAATTACTTGAGATTTGTTCAGGTTAGATTCTAAGTCAATTGTATAATCACGAGCTTTTAAATACTCTTTTTTCATAGTTTCCTTTTCTTTCCGAGCATTTCGCATAGCCTCTAACTCATTGCTAAGTTTATCACTCGCCAATTTCTCAAAATGAGCTTTGTCCCATTTTC] [+] EMBL CD074948 [AAATTTATTGTTCACATAAATATAATACACAATTACAGGAACTGATTATTTACAAATGTGTACAACGGTCACTTTGATCTCTTACCAAAACCACCAAATCCCATAGCTGCTGCGACGTCAGAATCTTCAAACTGTTCGTCATTTCTACGCCTTTTCTCTTTGCGTTTTTCTTGCTTATAAGCCCTAAATTTCTCTTCTTCCTCAGCGATTTGTCTCATTCTTTCATCTAAACTGTACTCTTCTGCCTTTTCTTCAGATTTTTGCTTGTGAAGCTGAAACCTTTCTTTAACTTCTTCTAAAGTTGACCTTTTAATTCTCATCGACATTCCCATATTCCTTTGATGTTTTTTACCATTTATATGGTCCAAATAGTTAATTGAATCTTTCACAACACAGTCACAAACTTCACAGTAGTAGCCTGCTTGTGAAGATCCTGGTCCGGTCTTTGCAATTACTTGAGATTTGTTCAGGTTAGATTCTAAGTCAATTGTATAATCACGAGCTTTTAAATACTCTTTTTTCATAGTTTCCTTTTCTTTCCGAGCATTTCGCATAGCCTCTAACTCATTGCTAAGTTTATCACTCGCCAATTTCTCAAAATGAGCTTTGTCCCATTTT ] [-] EMBL CD081126 [ AATTTATTGTTCACATAAATATAATACACAATTACAGGAACTGATTATTTACAAATGTGTACAACGGTCACTTTGATCTCTTACCAAAACCACCAAATCCCATAGCTGCTGCGACGTCAGAATCTTCAAACTGTTCGTCATTTCTACGCCTTTTCTCTTTGCGTTTTTCTTGCTTATAAGCCCTAAATTTCTCTTCTTCCTCAGCGATTTGTCTCATTCTTTCATCTAAACTGTACTCTTCTGCCTTTTCTTCAGATTTTTGCTTGTGAAGCTGAAACCTTTCTTTAACTTCTTCTAAAGTTGACCTTTTAATTCTCATCGACATTCCCATATTCCTTTGATGTTTTTTACCATTTATATGGTCCAAATAGTTAATTGAATCTTTCACAACACAGTCACAAACTTCACAGTAGTAGCCTGCTTGTGAAGATCCTGGTCCGGTCTTTGCAATTACTTGAGATTTGTTCAGGTTAGATTCTAAGTCAATTGTATAATCACGAGCTTTTAAATACTCTTTTTTCATAGTTTCCTTTTCTTTCCGAGCATTTCGCATAGCCTCTAACTCATTGCTAAGTTTATCACTCGCCAATTTCTCAAAATGAGCTTTGTCCCATTT ] [-] EMBL CD077380 [ TCATTTCTACGCCTTTTCTCTTTGCGTTTTTCTTGCTTATAAGCCCTAAATTTCTCTTCTTCCTCAGCGATTTGTCTCATTCTTTCATCTAAACTGTACTCTTCTGCCTTTTCTTCAGATTTTTGCTTGTGAAGCTGAAACCTTTCTTTAACTTCTTCTAAAGTTGACCTTTTAATTCTCATCGACATTCCCATATTCCTTTGATGTTTTTTACCATTTATATGGTCCAAATAGTTAATTGAATCTTTCACAACACAGTCACAAACTTCACAGTAGTAGCCTGCTTGTGAAGATCCTGGTCCGGTCTTTGCAATTACTTGAGATTTGTTCAGGTTAGATTCTAAGTCAATTGTATAATCACGAGCTTTTAAATACTCTTTTTTCATAGTTTCCTTTTCTTTCCGAGCATTTCGCATAGCCTCTAACTCATTGCTAAGTTTATCACTCGCCAATTTCTCAAAATGAGCTTTGTCCCATTTTC] consensusID : consensus_6733#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 137 fasta sequence [TGCGCCATATAAATGGTAAAAAACATCAAAGGAATATGGGAATGTCGATGAGAATTAAAAGGTCAACTTTAGAAGAAGTTAAAGAAAGGTATTACTGCGGTATTATAACTCTGCTATAGGTTTCAGCTTCACAAGCA] [+] EMBL CD083684 [TGCGCCATATAAATGGTAAAAAACATCAAAGGAATATGGGAATGTCGATGAGAATTAAAAGGTCAACTTTAGAAGAAGTTAAAGAAAGGTATTACTGCGGTATTATAACTCTGCTATAGGTTTCAGCTTCACAAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6733#0 AAATTTATTGTTCACATAAATATAATACACAATTACAGGAACTGATTATTTACAAATGTG 60 consensus_6733#1 -------TGCGCCATATAAATGGTAAAAAACATCAAAGGA-------ATATGGGAATGTC 46 * ** ****** * * * ** * **** ** * ***** consensus_6733#0 TACAACGGTCACTTTGATCTCTTACCAAAACCACCAAATCCCATAGCTGCTGCGACGTCA 120 consensus_6733#1 GATGAGAATTAAAA-GGTCAACTTTAGAAGAAGTTAAAGAAAGGTATTACTGCGGTATTA 105 * * * * * ** * ** *** * ***** * * consensus_6733#0 GAATCTTCAAACTGTTCGTCATTTCTACGCCTTTTCTCTTTGCGTTTTTCTTGCTTATAA 180 consensus_6733#1 TAACTCTGCTATAGGTT-TCAGCTTCACAAGCA--------------------------- 137 ** * * * * *** * ** consensus_6733#0 GCCCTAAATTTCTCTTCTTCCTCAGCGATTTGTCTCATTCTTTCATCTAAACTGTACTCT 240 consensus_6733#1 ------------------------------------------------------------ consensus_6733#0 TCTGCCTTTTCTTCAGATTTTTGCTTGTGAAGCTGAAACCTTTCTTTAACTTCTTCTAAA 300 consensus_6733#1 ------------------------------------------------------------ consensus_6733#0 GTTGACCTTTTAATTCTCATCGACATTCCCATATTCCTTTGATGTTTTTTACCATTTATA 360 consensus_6733#1 ------------------------------------------------------------ consensus_6733#0 TGGTCCAAATAGTTAATTGAATCTTTCACAACACAGTCACAAACTTCACAGTAGTAGCCT 420 consensus_6733#1 ------------------------------------------------------------ consensus_6733#0 GCTTGTGAAGATCCTGGTCCGGTCTTTGCAATTACTTGAGATTTGTTCAGGTTAGATTCT 480 consensus_6733#1 ------------------------------------------------------------ consensus_6733#0 AAGTCAATTGTATAATCACGAGCTTTTAAATACTCTTTTTTCATAGTTTCCTTTTCTTTC 540 consensus_6733#1 ------------------------------------------------------------ consensus_6733#0 CGAGCATTTCGCATAGCCTCTAACTCATTGCTAAGTTTATCACTCGCCAATTTCTCAAAA 600 consensus_6733#1 ------------------------------------------------------------ consensus_6733#0 TGAGCTTTGTCCCATTTTC 619 consensus_6733#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||