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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6745#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 853 fasta sequence
[AAATGAAAAAACAAACAAGTAAACACAGACTATTAGAAAAAAGTTTTTTTGTTTAATGAATACATATTTTCAATTCGGTAGTTAGTTAATTTTATAAAGGACATAGTATNAAATTCGTTGGATTTCGAATAGACGAACATTGGTTTCATACCAGATAGGTGGAGTGATATTCCTTAAATATATTATACCCCATAAATAATTACGAAACNATATGGTTGTACCAGTATTTGACTGATATTTACGGATAAGTATTGGATGTGGTACAGGCAACAAGCCAACAAGAGTACCATTTTGAAGGAAACGAACAATCTCAGTTTCATCTGTTAATCCTTTATCAATGCAGA-TTTTTTCAACTTGAGGCACTAATACCTGTAATAAACGCATAATTGTTTGAAAAGGCATTTTTAATTTCCAACTATGAACCCATTCTGATGTTGGTTCCCAAGTTGATGAATTTATTTCATTTAATTTTTGTAGTTTGTCGCTATTGTCATTCATTGAATGAGATGAATTACTTTGTTTACATGTGATTGTTTCAATGGAATGAAAAGATTGTGTATCAGAAGTTAATAGTGAACTGTTTTGTGTTTCTTTCGTCTGATTTGTACTTGTCAGAGAACTCTCTGATATTCCAGATCTATTTATTGGGTATTCTTGAACATTATGTATTGTTAAATCTCTATCAGATTCATCGTTATTATTAGTAGTAGTACTATCCACTGGAGTACGCTGACTANGTGAAGAATGTGATATTAAATTATTCTCAATTTCTGCATGATAATTTGAGAAACGTTCATCTAATTGAGTAGCATTGCCTAAACGTTTACCTGTCATTTTATGTAATGGAGGAACA]
[-] EMBL CD084364 [AAATGAAAAAACAAACAAGTAAACACAGACTATTAGAAAAAAGTTTTTTTGTTTAATGAATACATATTTTCAATTCGGTAGTTAGTTAATTTTATAAAGGACATAGTATNAAATTCGTTGGATTTCGAATAGACGAACATTGGTTTCATACCAGATAGGTGGAGTGATATTCCTTAAATATATTATACCCCATAAATAATTACGAAACNATATGGTTGTACCAGTATTTGACTGATATTTACGGATAAGTATTGGATGTGGTACAGGCAACAAGCCAACAAGAGTACCATTTTGAAGGAAACGAACAATCTCAGTTTCATCTGTTAATCCTTTATCAATGCAGA TTTTTTCAACTTGAGGCACTAATACCTGTAATAAACGCATAATTGTTTGAAAAGGCATTTTTAATTTCCAACTATGAACCCATTCTGATGTTGGTTCCCAAGTTGATGAATTTATTTCATTTAATTTTTGTAGTTTGTCGC ]
[+] EMBL CD183802 [ CCATTTTGAAGGAAACGGACAATCTCAGTTTCATCTGTTAATCCTTTATCAATGCAGATTTTTTTCAACTTGAGGCACTAATACCTGTAATAAACGCATAATTGTTTGAAAAGGCATTTTTAATTTCCAACTATGAACCCATTCTGATGTTGGTTCCCAAGTTGATGAATTTATTTCATTTAATTTTTGTAGTTTGTCGTTATTGTCATTCATTGAATGAGATGAATTACTTTGTTTACATGTGATTGTTTCAATGGAATGAAAAGATTGTGTATCAGAAGTTAATAGTGAACTGTTTTGTGTTTCTTTCGTCTGATTTGTACTTGTCAGAGAACTCTCTGATATTCCAGATCTATTTATTGGGTATTCTTGAACATTATGTATTGTTAAATCTCTATCAGATTCATCGTTATTATTAGTAGTAGTACTATCCACTGGAGTACGCTGACTANGTGAAGAATGTGATATTAAATTATTCTCAATTTCTGCATGATAATTTGAGAAACGTTCATCTAATTGAGTAGCATTGCCTAAACGTTTACCTGTCATTTTATGTAATGGAGGAACA]
consensusID : consensus_6745#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 786 fasta sequence
[TTTTCGAACCGGAGTGTGAAAGAATATAATAACAATAGCATGAATAGATTGATATTTTAAAAGTACACAGATACGAATTGGGTGTATATATATGTATATTATTAGTAGAAAAGTATATCAGTAGTATGAATAAGTACAAACTGAATTGGAAAGAATATTTTTTGTAATTCAGTGAAGATGAAAAAACAAAACCAACACTTGAGAGTAAGTAGTACACAAACAAAGTCTATAACTATTCTTTTTTAACACAGTGGATATATCTATTTATTCAAAGACATGATGTATGTATAAATGTAATAATGAAGTGAAATGAAAAAACAAACAAGTAAACACAGACTATTAGAAAAAAGTTTTTTTGTTTAATGAATACATATTTTCAATTCGGTAGTTAGTTAATTTTATTAAGGACATAGTATTAAATTCGTTGGATTTCGAATAGACGAACATTGGTTTCATACCAGATAGGTGGAGTGATATTCCTTAAATATATTATACCCCATAAATAATTACGAAACCATATGGTTGTACCAGTATTTGACTGATATTTACGGATAAGTATTGGATGTGGTACAGGCAACAAGCCAACAAGAGTACCATTTTGAAGGAAACGAACAATCTCAGTTTCATCTGTTAATCCTTTATCAATGCAGATTTTTTCAACTTGAGGCACTAATACCTGTAATAAACGCATAATTGTTTGAAAAGGCATTTTTAATTTCCAACTATGAACCCATTCTGATGTTGGTTCCNCAAGTTGATCCTCGTGCCGCATTNTTGGCCTCGGAG]
[+] EMBL CD075090 [TTTTCGAACCGGAGTGTGAAAGAATATAATAACAATAGCATGAATAGATTGATATTTTAAAAGTACACAGATACGAATTGGGTGTATATATATGTATATTATTAGTAGAAAAGTATATCAGTAGTATGAATAAGTACAAACTGAATTGGAAAGAATATTTTTTGTAATTCAGTGAAGATGAAAAAACAAAACCAACACTTGAGAGTAAGTAGTACACAAACAAAGTCTATAACTATTCTTTTTTAACACAGTGGATATATCTATTTATTCAAAGACATGATGTATGTATAAAT ]
[-] EMBL CD081259 [ AATAGCATGAATAGATTGATA TTTAAAAGTACACAGATACGAATGGTGTGTATATATATGTATATTATTAGTAGAAAAGTATATCAGTAGTATGAATAAGTACAAACTGAATTGGAAAGAATATTTTTTGTAATTCAGTGAAGATGAAAAAACAAAACCAACACTTGAGAGTAAGTAGTACACAAACAAAGTCTATAACTATTCTTTTTTAACACAGTGGATATATCTATTTATTCAAAGACATGATGTATGTATAAATGTAATAATGAAGTGAAATGAAAAAACAAACAAGTAAACACAGACTATTAGAAAAAAGTTTTTTTGTTTAATGAATACATATTTTCAATTCGGTAGTTAGTTAATTTTATTAAGGACATAGTATTAAATTCGTTGGATTTCGAATAGACGAACATTGGTTTCATACCAGATAGGTGGAGTGATATTCCTTAAATATATTATACCCCATAAATAATTACGAAACCATATGGTTGTACCAGTATTTGACTGATATTTACGGATAAGTATTGGATGTGGTACAGGCAACAAGCCAACAAGAGTACCATTTTGAAGGAAACGAACAATCTCAGTTTCATCTGTTAATCCTTTATCAATGCAGATTTTTTCAACTTGAGGCACTAATACCTGTAATAAACGCATAATTGTTTGAAAAGGCATTTTTAATTTCCAACTATGAACCCATTCTGATGTTGGTTCCNCAAGTTGATCCTCGTGCCGCATTNTTGGCCTCGGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6745#0 ------------------------------------------------------------
consensus_6745#1 TTTTCGAACCGGAGTGTGAAAGAATATAATAACAATAGCATGAATAGATTGATATTTTAA 60
consensus_6745#0 ------------------------------------------------------------
consensus_6745#1 AAGTACACAGATACGAATTGGGTGTATATATATGTATATTATTAGTAGAAAAGTATATCA 120
consensus_6745#0 ------------------------------------------------------------
consensus_6745#1 GTAGTATGAATAAGTACAAACTGAATTGGAAAGAATATTTTTTGTAATTCAGTGAAGATG 180
consensus_6745#0 ------------------------------------------------------------
consensus_6745#1 AAAAAACAAAACCAACACTTGAGAGTAAGTAGTACACAAACAAAGTCTATAACTATTCTT 240
consensus_6745#0 ------------------------------------------------------------
consensus_6745#1 TTTTAACACAGTGGATATATCTATTTATTCAAAGACATGATGTATGTATAAATGTAATAA 300
consensus_6745#0 -------AAATGAAAAAACAAACAAGTAAACACAGACTATTAGAAAAAAGTTTTTTTGTT 53
consensus_6745#1 TGAAGTGAAATGAAAAAACAAACAAGTAAACACAGACTATTAGAAAAAAGTTTTTTTGTT 360
*****************************************************
consensus_6745#0 TAATGAATACATATTTTCAATTCGGTAGTTAGTTAATTTTATAAAGGACATAGTATNAAA 113
consensus_6745#1 TAATGAATACATATTTTCAATTCGGTAGTTAGTTAATTTTATTAAGGACATAGTATTAAA 420
****************************************** ************* ***
consensus_6745#0 TTCGTTGGATTTCGAATAGACGAACATTGGTTTCATACCAGATAGGTGGAGTGATATTCC 173
consensus_6745#1 TTCGTTGGATTTCGAATAGACGAACATTGGTTTCATACCAGATAGGTGGAGTGATATTCC 480
************************************************************
consensus_6745#0 TTAAATATATTATACCCCATAAATAATTACGAAACNATATGGTTGTACCAGTATTTGACT 233
consensus_6745#1 TTAAATATATTATACCCCATAAATAATTACGAAACCATATGGTTGTACCAGTATTTGACT 540
*********************************** ************************
consensus_6745#0 GATATTTACGGATAAGTATTGGATGTGGTACAGGCAACAAGCCAACAAGAGTACCATTTT 293
consensus_6745#1 GATATTTACGGATAAGTATTGGATGTGGTACAGGCAACAAGCCAACAAGAGTACCATTTT 600
************************************************************
consensus_6745#0 GAAGGAAACGAACAATCTCAGTTTCATCTGTTAATCCTTTATCAATGCAGATTTTTTCAA 353
consensus_6745#1 GAAGGAAACGAACAATCTCAGTTTCATCTGTTAATCCTTTATCAATGCAGATTTTTTCAA 660
************************************************************
consensus_6745#0 CTTGAGGCACTAATACCTGTAATAAACGCATAATTGTTTGAAAAGGCATTTTTAATTTCC 413
consensus_6745#1 CTTGAGGCACTAATACCTGTAATAAACGCATAATTGTTTGAAAAGGCATTTTTAATTTCC 720
************************************************************
consensus_6745#0 AACTATGAACCCATTCTGATGTTGGTTCCC-AAGTTGATGAATTTATTTCATTTA-ATTT 471
consensus_6745#1 AACTATGAACCCATTCTGATGTTGGTTCCNCAAGTTGATCCTCGTGCCGCATTNTTGGCC 780
***************************** ******** * ****
consensus_6745#0 TTGTAGTTTGTCGCTATTGTCATTCATTGAATGAGATGAATTACTTTGTTTACATGTGAT 531
consensus_6745#1 TCGGAG------------------------------------------------------ 786
* * **
consensus_6745#0 TGTTTCAATGGAATGAAAAGATTGTGTATCAGAAGTTAATAGTGAACTGTTTTGTGTTTC 591
consensus_6745#1 ------------------------------------------------------------
consensus_6745#0 TTTCGTCTGATTTGTACTTGTCAGAGAACTCTCTGATATTCCAGATCTATTTATTGGGTA 651
consensus_6745#1 ------------------------------------------------------------
consensus_6745#0 TTCTTGAACATTATGTATTGTTAAATCTCTATCAGATTCATCGTTATTATTAGTAGTAGT 711
consensus_6745#1 ------------------------------------------------------------
consensus_6745#0 ACTATCCACTGGAGTACGCTGACTANGTGAAGAATGTGATATTAAATTATTCTCAATTTC 771
consensus_6745#1 ------------------------------------------------------------
consensus_6745#0 TGCATGATAATTTGAGAAACGTTCATCTAATTGAGTAGCATTGCCTAAACGTTTACCTGT 831
consensus_6745#1 ------------------------------------------------------------
consensus_6745#0 CATTTTATGTAATGGAGGAACA 853
consensus_6745#1 ----------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||