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Schistosoma mansoni
cluster # 6754 cluster # 6754       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6754#0 length = 1102 sequences # 2  
consensus_6754#1 length = 543 sequences # 2  

consensusID : consensus_6754#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1102
fasta sequence
                              [TTAATTCGGCACGCAGGGAAAATTTATATAAAATCATCCTGGTGATCAATATGATATATCAGAAGTACATTCATGCACTGAAAACCGGTTCTGTTTACGCTAAAAATCAAGGCTAATTAGCTTGACTCTATAAAATGAAAATATCAGCAGATACAACTTTTAGTTGATATGGCTGAAAACCCTTCTCCATAGTACTTACCTATCCAGTCTTGGAATGAATAATGTATTTATTCAGTTTTCAATATTTGTTAGTAGCCAGTCCCAAGAAGGCGTTACTCGTATAGAGTAGAAGGTATCCCTACAGTCAAGTTTCCAATGTTTTATTGTTAGTTTCTGGGTATTGTCTCTAAGGTGTGTATATTTTTTTCTATAAAGTATATTGTTATACATAAAACTAAATAAAATGCTCCAACAAAGATTCTTTAAACCACTAAACTTTTGGTCATTATATCATATTGCATGTTGTTTACTCTATTTGTTTTTTTACATTTTCCTCTACAGTATGCCAAAGATATTGAAACCGAATCCAAGTCACAAAATAAATTTCTTGATGAAATTCAAGACTCATTCGACAATGCTAGTAATCTTTTGTCAAATACACTTCATCGAGTCCTTGGAATACCAAAAAAGCGTACAAATAATCGGAAATTTATGTGTTATGTCATTTTGTTTGTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAGATATAGTTAGCTAACCATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCAGGAATTTCTTTGGGTTATTTTCATTAGTTAAAAAAAGAAAGAACTATTGAACTTATCTTCTNCTTCTTGGAATTATTGGAACTTATCATCCCGGGAACTACCAACTTCCTCAGTANATNTTATCATTAAAATAATTATAATAAGCATATAGCGTTTGTATTTAATGTTTTGGGTTGT-AAAATGNATTTGNNTTCTACATGAATTTACCTA-TTTGNCTACCCCCTCATTTCTTGAGATAGTCTAAATCACTATCCATCACAGNGGTAACTGTTAACTACTGTTTTNCTTC-ATGGGTTTCCATAAATC-ATNGATAAT-AATCTAGTGCC]

[+] EMBL CD081491             [TTAATTCGGCACGCAGGGAAAATTTATATAAAATCATCCTGGTGATCAATATGATATATCAGAAGTACATTCATGCACTGAAAACCGGTTCTGTTTACGCTAAAAATCAAGGCTAATTAGCTTGACTCTATAAAATGAAAATATCAGCAGATACAACTTTTAGTTGATATGGCTGAAAACCCTTCTCCATAGTACTTACCTATCCAGTCTTGGAATGAATAATGTATTTATTCAGTTTTCAATATTTGTTAGTAGCCAGTCCCAAGAAGGCGTTACTCGTATAGAGTAGAAGGTATCCCTACAGTCAAGTTTCCAATGTTTTATTGTTAGTTTCTGGGTATTGTCTCTAAGGTGTGTATATTTTTTTCTATAAAGTATATTGTTATACATAAAACTAAATAAAATGCTCCAACAAAGATTCTTTAAACCACTAAACTTTTGGTCATTATATCATATTGCATGTTGTTTACTCTATTTGTTTTTTTACATTTTCCTCTACAGTATGCCAAAGATATTGAAACCGAATCCAAGTCACAAAATAAATTTCTTGATGAAATTCAAGACTCATTCGACAATGCTAGTAATCTTTTGTCAAATACACTTCATCGAGTCCTTGGAATACCAAAAAAGCGTACAAATAATCGGAAATTTATGTGTTATGTCATTTTGTTTGTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAGATATAGTTAGCTAACCATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCAGGAATTTCTTTGGGTTATTTTCATTAGTTAAAAAAAGAAAGAACTATTGAACTTATCTTCTNCTTCTTGGAATTATTGGAACTTATCATCCCGGGAACTACCAACTTCCTCAGTANATNTTATCATTAAAATAATTATAATAAGCATATAGCGTTTGTATTTAATGTTTTGGGTTGT AAAATGNATTTGNNTTCTACATGAATTTACCTA TTTGNCTACCCCCTCATTTCTTGAGATAGTCTAAATCACTATCCATCACAGNGGTAACTGTTAACTACTGTTTTNCTTC ATGGGTTTCCATAAATC ATNGATAAT AATCTAGTGCC]
[-] EMBL CD075315             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TCCTTGGAATACCAAAANAGCGTACAAATAATCGGAAATTTATGTGTTATGTCATTTTGTTTGTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAGATATAGTTAGCTAACCATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCAGGAATTTCTTTGGGTTATTTTCATTAGTT AAAAAAGAAAGAACTATTGAACTTATCTTCTCCTTCTTGTAATTATTGTAACTTATCATCCCGGGAACTACCAACTTCTTCAGTAAATTTTATCATTAAAATAATTATAATAAGCATATAGCGTTTGTATTTAATGTTTTGGTTTGTAAAAATGATTTTGTTTTCTACATGATTTTA CTATTTTGTCTACCCCCTCATTTCTTGAGATAGTCTAAATCACTATTCATCACAGTGTTAACTGTTAACTACTGTTTTTCTTCAATGTGTTTTCATTAATCAATTGATAATAAATCTAGTGtc]


>consensus_6754#0 TTAATTCGGCACGCAGGGAAAATTTATATAAAATCATCCTGGTGATCAATATGATATATC AGAAGTACATTCATGCACTGAAAACCGGTTCTGTTTACGCTAAAAATCAAGGCTAATTAG CTTGACTCTATAAAATGAAAATATCAGCAGATACAACTTTTAGTTGATATGGCTGAAAAC CCTTCTCCATAGTACTTACCTATCCAGTCTTGGAATGAATAATGTATTTATTCAGTTTTC AATATTTGTTAGTAGCCAGTCCCAAGAAGGCGTTACTCGTATAGAGTAGAAGGTATCCCT ACAGTCAAGTTTCCAATGTTTTATTGTTAGTTTCTGGGTATTGTCTCTAAGGTGTGTATA TTTTTTTCTATAAAGTATATTGTTATACATAAAACTAAATAAAATGCTCCAACAAAGATT CTTTAAACCACTAAACTTTTGGTCATTATATCATATTGCATGTTGTTTACTCTATTTGTT TTTTTACATTTTCCTCTACAGTATGCCAAAGATATTGAAACCGAATCCAAGTCACAAAAT AAATTTCTTGATGAAATTCAAGACTCATTCGACAATGCTAGTAATCTTTTGTCAAATACA CTTCATCGAGTCCTTGGAATACCAAAAAAGCGTACAAATAATCGGAAATTTATGTGTTAT GTCATTTTGTTTGTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAGATAT AGTTAGCTAACCATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCAGGAA TTTCTTTGGGTTATTTTCATTAGTTAAAAAAAGAAAGAACTATTGAACTTATCTTCTNCT TCTTGGAATTATTGGAACTTATCATCCCGGGAACTACCAACTTCCTCAGTANATNTTATC ATTAAAATAATTATAATAAGCATATAGCGTTTGTATTTAATGTTTTGGGTTGTAAAATGN ATTTGNNTTCTACATGAATTTACCTATTTGNCTACCCCCTCATTTCTTGAGATAGTCTAA ATCACTATCCATCACAGNGGTAACTGTTAACTACTGTTTTNCTTCATGGGTTTCCATAAA TCATNGATAATAATCTAGTGCC



consensusID : consensus_6754#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 543
fasta sequence
                              [TTTCCTTATTTTATCAAGTGCCGAAGTTCTGTACAATAAAGTCAGTGAATCAAATAAAATCAATATCACCTTATCTACTCGAGGGAGACTACAACATTGATGACAATGGATGCTTCACATTCTCTTTTGGAACAAGAAAACAACCGCAGGGCTGAAGAAATGTCGCACAAGGTTTCATTGCTCAAGGCATATGCCAAAGATATTGAAACCGAATCCAAGTCACAAAATAAATTTCTTGATGAAATTCAAGACTCATTCGACAATGCTAGTAATCTTTTGTCAAATACACTTCATCGAGTCCTTGGAATACCAAAAAAGCGTACAAATAATCGGAAATTTATGTGTTATGTCATTTTGTTTGTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAGATATAGTTAGCTAACCATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCAGGAATTTCTTTGGGTTATTNTCATTAGTTAAAAAAGAAAGAACTATTGAACTTATCTTCTCCTTCTTGTAATTATTGTA]

[+] EMBL CD184231             [TTTCCTTATTTTATCAAGTGCCGAAGTTCTGTACAATAAAGTCAGTGAATCAAATAAAATCAATATCACCTTATCTACTCGAGGGAGACTACAACATTGATGACAATGGATGCTTCACATTCTCTTTTGGAACAAGAAAACAACCGCAGGGCTGAAGAAATGTCGCACAAGGTTTCATTGCTCAAGGCATATGCCAAAGATATTGAAACCGAATCCAAGTCACAAAATAAATTTCTTGATGAAATTCAAGACTCATTCGACAATGCTAGTAATCTTTTGTCAAATACACTTCATCGAGTCCTTGGAATACCAAAAAAGCGTACAAATAATCGGAAATTTATGTGTTATGTCATTTTGTTTGTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAGATATAGTTAGCTAACCATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCAGGAATTTCTTTGGGTTATTNTCATTAGTTAAAAAAGAAAGAACTATTGAACTTATCTTCTCCTTCTTGTAATTAT    ]
[-] EMBL CD132362             [                                                                                 AGGGAGACTACAACATGGATGACAATGGATGCTTCACATTCTCTTTTGGAACAAGAAAACAACCGCAGGGCTGAAGAAATGTCGCACAAGGTTTCATTGCTCAAGGCATATGCCAAAGATATTGAAACCGAATCCAAGTCACAAAATAAATTTCTTGATGAAATTCAAGACTCATTCGACAATGCTAGTAATCTTTTGTCAAATACACTTCATCGAGTCCTTGGAATACCAAAAAAGCGTACAAATAATCGGAAATTTATGTGTTATGTCATTTTGTTTGTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAGATATAGTTAGCTAACCATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCAGGAATTTCTTTGGG TATTTTCATTAGTTAAAAAAGAAAGAACTATTGAAC TATCTTCTCCTTC TGTAATTATTGTA]


>consensus_6754#1 TTTCCTTATTTTATCAAGTGCCGAAGTTCTGTACAATAAAGTCAGTGAATCAAATAAAAT CAATATCACCTTATCTACTCGAGGGAGACTACAACATTGATGACAATGGATGCTTCACAT TCTCTTTTGGAACAAGAAAACAACCGCAGGGCTGAAGAAATGTCGCACAAGGTTTCATTG CTCAAGGCATATGCCAAAGATATTGAAACCGAATCCAAGTCACAAAATAAATTTCTTGAT GAAATTCAAGACTCATTCGACAATGCTAGTAATCTTTTGTCAAATACACTTCATCGAGTC CTTGGAATACCAAAAAAGCGTACAAATAATCGGAAATTTATGTGTTATGTCATTTTGTTT GTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAGATATAGTTAGCTAACC ATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCAGGAATTTCTTTGGGTT ATTNTCATTAGTTAAAAAAGAAAGAACTATTGAACTTATCTTCTCCTTCTTGTAATTATT GTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6754#0      TTAATTCGGCACGCAGGGAAAATTTATATAAAATCATCCTGGTGATCAATATGATATATC 60
consensus_6754#1      ------------------------------------------------------------
                                                                                  

consensus_6754#0      AGAAGTACATTCATGCACTGAAAACCGGTTCTGTTTACGCTAAAAATCAAGGCTAATTAG 120
consensus_6754#1      ------------------------------------------------------------
                                                                                  

consensus_6754#0      CTTGACTCTATAAAATGAAAATATCAGCAGATACAACTTTTAGTTGATATGGCTGAAAAC 180
consensus_6754#1      ------------------------------------------------------------
                                                                                  

consensus_6754#0      CCTTCTCCATAGTACTTACCTATCCAGTCTTGGAATGAATAATGTATTTATTCAGTTTTC 240
consensus_6754#1      ------------------------------------------------------------
                                                                                  

consensus_6754#0      AATATTTGTTAGTAGCCAGTCCCAAGAAGGCGTTACTCGTATAGAGTAGAAGGTATCCCT 300
consensus_6754#1      ------------------------------------------------------------
                                                                                  

consensus_6754#0      ACAGTCAAGTTTCCAATGTTTTATTGTTAGTTTCTGGGTATTGT-CTCTAAGGTGTGTAT 359
consensus_6754#1      ----------TTTCCTTATTTTATCA--AGTGCCGAAGTTCTGTACAATAAAGTCAGTGA 48
                                ** *  * ******    ***  *   **  *** *  *** **  **  

consensus_6754#0      ATTTTTTTCTATAAAGTATATTGT-TATACATAAAACTAAATAAAATGCTC-CAACAAAG 417
consensus_6754#1      ATCAAATAAAATCAATATCACCTTATCTACTCGAGGGAGACTACAACATTGATGACAATG 108
                      **    *   ** **    *   * * ***   *     * ** **   *    **** *

consensus_6754#0      ATTCTTTAAACCACTAAACTTTTGGTCATTATATCATATTGCATG-TTGTTTACTCTATT 476
consensus_6754#1      GATGCTTCA--CATTCTCTTTTGGAACAAGAAAACA-ACCGCAGGGCTGAAGAAATGTCG 165
                        *  ** *  ** *    *** *  **  * * ** *  *** *  **   *       

consensus_6754#0      TGTTTTTTTACATTTTCCTCTACAGTATGCCAAAGATATTGAAACCGAATCCAAGTCACA 536
consensus_6754#1      CACAAGGTTTCATTGCTCAAGGCA-TATGCCAAAGATATTGAAACCGAATCCAAGTCACA 224
                             ** ****   *    ** ***********************************

consensus_6754#0      AAATAAATTTCTTGATGAAATTCAAGACTCATTCGACAATGCTAGTAATCTTTTGTCAAA 596
consensus_6754#1      AAATAAATTTCTTGATGAAATTCAAGACTCATTCGACAATGCTAGTAATCTTTTGTCAAA 284
                      ************************************************************

consensus_6754#0      TACACTTCATCGAGTCCTTGGAATACCAAAAAAGCGTACAAATAATCGGAAATTTATGTG 656
consensus_6754#1      TACACTTCATCGAGTCCTTGGAATACCAAAAAAGCGTACAAATAATCGGAAATTTATGTG 344
                      ************************************************************

consensus_6754#0      TTATGTCATTTTGTTTGTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAG 716
consensus_6754#1      TTATGTCATTTTGTTTGTCGTTATTTTTATTTTACTGGTGTATCTCTTTGTTTTTCACAG 404
                      ************************************************************

consensus_6754#0      ATATAGTTAGCTAACCATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCA 776
consensus_6754#1      ATATAGTTAGCTAACCATTATCATTGTTGTATTACAGGTCTCGCTTTCTGGATTTTTCCA 464
                      ************************************************************

consensus_6754#0      GGAATTTCTTTGGGTTATTTTCATTAGTTAAAAAAAGAAAGAACTATTGAACTTATCTTC 836
consensus_6754#1      GGAATTTCTTTGGGTTATTNTCATTAGTTAAAAAA-GAAAGAACTATTGAACTTATCTTC 523
                      ******************* *************** ************************

consensus_6754#0      TNCTTCTTGGAATTATTGGAACTTATCATCCCGGGAACTACCAACTTCCTCAGTANATNT 896
consensus_6754#1      TCCTTCTTGTAATTATTGTA---------------------------------------- 543
                      * ******* ******** *                                        

consensus_6754#0      TATCATTAAAATAATTATAATAAGCATATAGCGTTTGTATTTAATGTTTTGGGTTGTAAA 956
consensus_6754#1      ------------------------------------------------------------
                                                                                  

consensus_6754#0      ATGNATTTGNNTTCTACATGAATTTACCTATTTGNCTACCCCCTCATTTCTTGAGATAGT 1016
consensus_6754#1      ------------------------------------------------------------
                                                                                  

consensus_6754#0      CTAAATCACTATCCATCACAGNGGTAACTGTTAACTACTGTTTTNCTTCATGGGTTTCCA 1076
consensus_6754#1      ------------------------------------------------------------
                                                                                  

consensus_6754#0      TAAATCATNGATAATAATCTAGTGCC 1102
consensus_6754#1      --------------------------
                                                




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)