These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 943 fasta sequence [CGGAGCCATNAATTCGGCACGAGGGCTTTTATGGATATAAAACACCTTACTGGTGAAGATAAGCTCAAACTCAGTCGTACTTACTTCTTTGCCGGAATCGGATTTCTTCCTTTCCTCTGGTGGATTAACGTTTTTTGTTTTCTAAAAGAGTTGTCTGCCCCACAGGCATATCCAGAATATAAACTGATTAGGAAATACGTCACTTTCAGTTTAATTGGAGCACTGTCTTGGACAGTTGTCTTTGTCGTTTGGATTGTTACTTTCCTAAATTTCCGGGTTAGCTGGGGTGAATTGGGGGATCGTTTGTCGTTTAACATACCACCTGGTAGACTGTAATGAAAATATCACTGAGGGATAATGAATGCCCTCCCAACGGGTCTGTTTGGGAGGTTACAGACTTGCTAGCTGAGGATGCTGTCATCGGCGAAACCCCTTGTATTTACACTTCTTCATCTGGATCTCGGCATATCTTCATATCTACAAAGTCTGGATTTATGAGCCAGGTGCTTTACATAAGTCGTCACGTGGATCGTTTATTATATAAATATCATAGTTCATCTCAATTTGATCCCTCAAAACCATCTGAATTTTGGATTCACGGTATAGGACCGCTTAGTATTATGAGGACAGCTGAGCTGGCTCTACATTTAAGTCATCGGCTGTACCCTGNGCACCTCAAAATATCAACTTACACGAGTAGCTGTTCAACTAAGAAACATATTATATCTCAAGTAGAAAATGAAAAAAATTCAATACGAGAAGAATCGCGGACCAAAGGTGCTATTCATGTCCATATCCGCTTGGTCCCCACACGCAATGCTGAGACGATTCCATANATTATAAGAATGCCTAGATAAAATGTGTCATTTCGTACCTCCACTTTATATTTTCATTATCCCAGTGGTACCCTAATGCTANTATGTATATTATGAGTCAAATAAAT] [+] EMBL CD081633 [CGGAGCCATNAATTCGGCACGAGGGCTTTTATGGATATAAAACACCTTACTGGTGAAGATAAGCTCAAACTCAGTCGTACTTACTTCTTTGCCGGAATCGGATTTCTTCCTTTCCTCTGGTGGATTAACGTTTTTTGTTTTCTAAAAGAGTTGTCTGCCCCACAGGCATATCCAGAATATAAACTGATTAGGAAATACGTCACTTTCAGTTTAATTGGAGCACTGTCTTGGACAGTTGTCTTTGTCGTTTGGATTGTTACTTTCCTAAATTTCCGGGTTAGCTGGGGTGAATTGGGGGATCGTTTGTCGTTTAACATACCACCTGGTAGACTGTAATGAAAATATCACTGAGGGATAATGAATGCCCTCCCAACGGGTCTGTTTGGGAGGTTACAGACTTGCTAGCTGAGGATGCTGTCATCGGCGAAACCCCTTGTATTTACACTTCTTCATCTGGATCTCGGCATATCTTCATATCTACAAAGTCTGGATTTATGAGCCAGGTGCTTTACATAAGTCGTCACGTGGATCGTTTATTATATAAATATCATAGTTCATCTCAATTTGATCCCTCAAAACCATCTGAATTTTGGATTCACGGTATAGGACCGCTTAGTATTATGAGGACAGCTGAGCTGGCTCTACATTTAAGTCATCGGCTGTACCCTGNGCACCTCAAAATATCAACTTACACGAGTAGCTGTTCAACTAAGAAACATATTATATCTCAAGTAGAAAATGAAAAAAATTCAATACGAGAAGAATCGCGGACCAAAGGTGCTATTCATGTCCATATCCGCTTGGTCCCCACACGCAATGCTGAGACGATTCCATANATTATAAGAATGCCTAGATAAAATGTGTCATTTCGTACCTCCACTTTATATTTTCATTATCCCAGTGGTACCCTAATGCTANTATGTATATTATGAGTCAAATAAAT] [-] EMBL BG930531 [ AACATACCACCTGGTAGACTGTAATGAAAATATCACTGAGGGATAATGAATGCCCTCCCAACGGGTCTGTTTGGGAGGTTACAGACCTGCTAGCTGAGGATGCTGTCATCGGCGAAGCCCCTTGTATTTACACTTCTTCATCTGGATCTCGGCATATCTTCATATCAACAAAGTCTGGATCTATGAGCCAGGTGCTTTACATAAGTCGTCACGTGGATCGTTTATTATATAAATATCATAGTTCATCTCGATTTGAc ] consensusID : consensus_6767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 283 fasta sequence [TATTGGTATTGTGATCGATGGGGGGTCGTTTGTCGTTTAACATACCACCTGGTAGACTGTAATGAAAATATCACTGAGGGATAATGAATGCCCTCCCAACGGGTCTGTTTGGGAGGTTACAGACTTGCTAGCTGAGGATGCTGTCATCGGCGAAACCCCTTGTATTTACACTTCTTCATCTGGATCTCGGCATATCTTCATATCTACAAAGTCTGGATTTATGAGCCAGGGGCTTTACATAAGTCGGCACGCGGATCGTTTATTATATAAATATCATAAGTCA] [+] EMBL BG930455 [TATTGGTATTGTGATCGATGGGGGGTCGTTTGTCGTTTAACATACCACCTGGTAGACTGTAATGAAAATATCACTGAGGGATAATGAATGCCCTCCCAACGGGTCTGTTTGGGAGGTTACAGACTTGCTAGCTGAGGATGCTGTCATCGGCGAAACCCCTTGTATTTACACTTCTTCATCTGGATCTCGGCATATCTTCATATCTACAAAGTCTGGATTTATGAGCCAGGGGCTTTACATAAGTCGGCACGCGGATCGTTTATTATATAAATATCATAAGTCA] consensusID : consensus_6767#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [TTATATTTCAAGTAGAAAATGAAAAAAATTCAATTCGAGAAGAATTGCGGGCCAAAGGGGGTATTCATGTCCAAAACCGGTTGGGCCCCCCACGCAATGGTGAGACGATTCCATAAATTATAAGAAAGCCTAGATAAAAAGGGTCATTTTGGACCCCCCCTTTAAATTTTCATTATCCCAGGGGGACCTAAATGGTATAATGGATATTATGAGGCAAAAAAATG] [-] EMBL CD075455 [TTATATTTCAAGTAGAAAATGAAAAAAATTCAATTCGAGAAGAATTGCGGGCCAAAGGGGGTATTCATGTCCAAAACCGGTTGGGCCCCCCACGCAATGGTGAGACGATTCCATAAATTATAAGAAAGCCTAGATAAAAAGGGTCATTTTGGACCCCCCCTTTAAATTTTCATTATCCCAGGGGGACCTAAATGGTATAATGGATATTATGAGGCAAAAAAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6767#0 CGGAGCCATNAATTCGGCACGAGGGCTTTTATGGATATAAAACACCTTACTGGTGAAGAT 60 consensus_6767#1 ------------------------------------------------------------ consensus_6767#2 ------------------------------------------------------------ consensus_6767#0 AAGCTCAAACTCAGTCGTACTTACTTCTTTGCCGGAATCGGATTTCTTCCTTTCCTCTGG 120 consensus_6767#1 ------------------------------------------------------------ consensus_6767#2 ------------------------------------------------------------ consensus_6767#0 TGGATTAACGTTTTTTGTTTTCTAAAAGAGTTGTCTGCCCCACAGGCATATCCAGAATAT 180 consensus_6767#1 ------------------------------------------------------------ consensus_6767#2 ------------------------------------------------------------ consensus_6767#0 AAACTGATTAGGAAATACGTCACTTTCAGTTTAATTGGAGCACTGTCTTGGACAGTTGTC 240 consensus_6767#1 ------------------------------------------------------------ consensus_6767#2 ------------------------------------------------------------ consensus_6767#0 TTTGTCGTTTGGATTGTTACTTTCCTAAATTTCCGGGTTAGCTGGGGTGAATTGGGGGAT 300 consensus_6767#1 -------------------------------TATTGGT--ATTGTGATCGAT-GGGGGGT 26 consensus_6767#2 ------------------------------------------------------------ consensus_6767#0 CGTTTGTCGTTTAACATACCACCTGGTAGACTGTAATGAAAATATCACTGAGGGATAATG 360 consensus_6767#1 CGTTTGTCGTTTAACATACCACCTGGTAGACTGTAATGAAAATATCACTGAGGGATAATG 86 consensus_6767#2 -----------TTATATTTCA---AGTAGAAAATGAAAAAAATTCAATTCGAGAA----G 42 * * ** ** ***** * * ***** * * * * * consensus_6767#0 AATGCCCTCCCAACGGGTCTGTTTGGGAGGTTACAGACTTGCTAG-CTGAGGATGCTGTC 419 consensus_6767#1 AATGCCCTCCCAACGGGTCTGTTTGGGAGGTTACAGACTTGCTAG-CTGAGGATGCTGTC 145 consensus_6767#2 AATTGCGGGCCAAAGGGGGTATTC---ATGTCCAAAACCGGTTGGGCCCCCCACGCAATG 99 *** * **** *** * ** * ** * ** * * * * * ** * consensus_6767#0 ATCGGCGAAACCCCTTGTATTTACACTTCTTCATCTGGATCTCGGCATATCTTCATATCT 479 consensus_6767#1 ATCGGCGAAACCCCTTGTATTTACACTTCTTCATCTGGATCTCGGCATATCTTCATATCT 205 consensus_6767#2 GTGAGACGATTCCATAAATTATAAGAAAGCCTAGATAAAAAGGGTCAT---TTTGGACCC 156 * * * ** * * ** * * * * *** ** * * consensus_6767#0 ACAAAGTCTGGATTTATGAGCCAGGTGCTTTACATAAGTCGTCACGTGGATCGTTTATTA 539 consensus_6767#1 ACAAAGTCTGGATTTATGAGCCAGGGGCTTTACATAAGTCGGCACGCGGATCGTTTATTA 265 consensus_6767#2 CCCCTTTAAATTTTCATTATCCCAGGGG--GACCTAAATGGTATAATGGATATTATGAGG 214 * * ** ** * ** * * ** *** * * **** * * consensus_6767#0 TATAAATATCATAGTTCATCTCAATTTGATCCCTCAAAACCATCTGAATTTTGGATTCAC 599 consensus_6767#1 TATAAATATCATAAGTCA------------------------------------------ 283 consensus_6767#2 CAAAAAAATG-------------------------------------------------- 224 * *** ** consensus_6767#0 GGTATAGGACCGCTTAGTATTATGAGGACAGCTGAGCTGGCTCTACATTTAAGTCATCGG 659 consensus_6767#1 ------------------------------------------------------------ consensus_6767#2 ------------------------------------------------------------ consensus_6767#0 CTGTACCCTGNGCACCTCAAAATATCAACTTACACGAGTAGCTGTTCAACTAAGAAACAT 719 consensus_6767#1 ------------------------------------------------------------ consensus_6767#2 ------------------------------------------------------------ consensus_6767#0 ATTATATCTCAAGTAGAAAATGAAAAAAATTCAATACGAGAAGAATCGCGGACCAAAGGT 779 consensus_6767#1 ------------------------------------------------------------ consensus_6767#2 ------------------------------------------------------------ consensus_6767#0 GCTATTCATGTCCATATCCGCTTGGTCCCCACACGCAATGCTGAGACGATTCCATANATT 839 consensus_6767#1 ------------------------------------------------------------ consensus_6767#2 ------------------------------------------------------------ consensus_6767#0 ATAAGAATGCCTAGATAAAATGTGTCATTTCGTACCTCCACTTTATATTTTCATTATCCC 899 consensus_6767#1 ------------------------------------------------------------ consensus_6767#2 ------------------------------------------------------------ consensus_6767#0 AGTGGTACCCTAATGCTANTATGTATATTATGAGTCAAATAAAT 943 consensus_6767#1 -------------------------------------------- consensus_6767#2 -------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||