These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 887 fasta sequence [CCATTATNTCGGCACGAGGGATCATTATGTCCATTACAATGAAGAGTTGCTTCCTGAAAATATAGTCATTGAAATACTTCGGCAACTTCTCAAAGCAGTATCTTTTATACATTCGAAATCGATCGTTCATTTGGATATCAAGCCTGAAAACATTCTTCTCCGACGTCCTCTCCCTCAATGTGATATCGCGTTGTGTGATTTTGGCCTAGCCAAGCATTTGCGGACAAACGAAGTTATCAGAGACCTTGTAGGTACACCAGATTATGCTGCTCCAGAAGTTTTGAACTATGATCCTATTCATCTCACAACAGATATTTGGAGTGTTGGTGTTGTTGTTTATTATTTGTTAACTGGTGAAAGTCCATTCTGGAACGAGAGTAAAGAACATACTCTTCTAAACGTTTGCCAATTAAATATCTCTTATCCTGACCACTTATTCCAAGATATTTCCATGGGAGCAATGTCTTTTATGAAGCGCTTAATCCAAAAGAATCCAAGAGATCGCCCATCAGCTGTTGATTGCTTCAATGATCCATGGCTTAGTTCTGCAACGTGCGCTGACACATTCAATACCGATAACTCTAGCCAATGTGGACTAGTTTCCGTATCACAGGATTTCAACAAATTAGATGACTAGAGTTTTGTAAAAGAATATTAACACTAAATCCTCATCAACTGTGTATAAAGACTACTCTAAGAATTATTCATTTATTTTCTTCCTTTTCATAAAAGAAATTTAAATGTACACTACATGCATAAATATTCACAAGTACATTATGTAGTTTATTTTTGATATTATGTTCCGTCGTTTATGTCCGTTTTGTATTTGACCTGTACACTCGCTTGTCTGTTCAGCAGTGTTNTGTCTTCAATTTAAATAAAANNNT] [+] EMBL CD081789 [CCATTATNTCGGCACGAGGGATCATTATGTCCATTACAATGAAGAGTTGCTTCCTGAAAATATAGTCATTGAAATACTTCGGCAACTTCTCAAAGCAGTATCTTTTATACATTCGAAATCGATCGTTCATTTGGATATCAAGCCTGAAAACATTCTTCTCCGACGTCCTCTCCCTCAATGTGATATCGCGTTGTGTGATTTTGGCCTAGCCAAGCATTTGCGGACAAACGAAGTTATCAGAGACCTTGTAGGTACACCAGATTATGCTGCTCCAGAAGTTTTGAACTATGATCCTATTCATCTCACAACAGATATTTGGAGTGTTGGTGTTGTTGTTTATTATTTGTTAACTGGTGAAAGTCCATTCTGGAACGAGAGTAAAGAACATACTCTTCTAAACGTTTGCCAATTAAATATCTCTTATCCTGACCACTTATTCCAAGATATTTCCATGGGAGCAATGTCTTTTATGAAGCGCTTAATCCAAAAGAATCCAAGAGATCGCCCATCAGCTGTTGATTGCTTCAATGATCCATGGCTTAGTTCTGCAACGTGCGCTGACACATTCAATACCGATAACTCTAGCCAATGTGGACTAGTTTCCGTATCACAGGATTTCAACAAATTAGATGACTAGAGTTTTGTAAAAGAATATTAACACTAAATCCTCATCAACTGTGTATAAAGACTACTCTAAGAATTATTCATTTATTTTCTTCCTTTTCATAAAAGAAATTTAAATGTACACTACATGCATAAATATTCACAAGTACATTATGTAGTTTATTTTTGATATTATGTTCCGTCGTTTATGTCCGTTTTGTATTTGACCTGTACACTCGCTTGTCTGTTCAGCAGTGTTNTGTCTTCAATTTAAATAAAANNNT] [-] EMBL CD075520 [ TTCTCCGACGTCCTCTCCCTCAATGTGATATCGCGTTGTGTGATTTTGGCCTAGCCAAGCATTTGCGGACAAACGAAGTTATCAGAGACCTTGTAGGTACACCAGATTATGCTGCTCCAGAAGTTTTGAACTATGATCCTATTCATCTCACAACAGATATTTGGAGTGTTGGTGTTGTTGTTTATTATTTGTTAACTGGTGAAAGTCCATTTTGGAACGAGAGTAAAGAACATACTTTTTTAAACGTTTGCCAATTAAATATCTCTTATCCTGACCACTTATTCCAAGATATTTCCATGGGAGCAATGTCTTTTATGAAGCGCTTAATCCAAAAGAATCCAAGAGATCGCCCATCAGCTGTTGATTGCTTCAATGATCCATGGCTTAGTTTTGCAACGTGCGCTGACACATTCAATACCGATAACTTTAGCCAATGTGGACTAGTTTCCGTATCACAGGATTTCAACAAATTAGATGACTAGAGTTTTGTAAAAGAATATTAACACTAAATCCTCATCAACTGTGTATAAAGACTACTTTAAGAATTATTCATTTATTTTCTTCCTTTTCATAAAAGAAATTTAAATGTACACTACATGCATAAATATTCACAAGTACATTATGTAGTTTATTTTTGATATTATGTTCCGTCGTTTATGTCCGTTTTGTATTTGACCTGTACACTCGCTTGTCTGTTCAGCAGTGTTTTGTCTTCAATGAAAATAAAAatt ] [-] EMBL CD197697 [ ATCCATGGCTTAGTTCTGCAACGTGCGCTGACACATTCAATACCGATAACTCTAGCCAATGTGGACTAGTTTCCGTATCACAGGATTTCAACAAATTAGATGACTAGAGTTTTGTAAAAGAATATTAACACTAAATCCTCATCAACTGTGTATAAAGACTACTCTAAGAATTATTCATTTATTTTCTTCCTTTTCATAAAAGAAATTTAAATGTACACTACATGCATAAATATTCACAAGTACATTATGTAGTTTATT ] consensusID : consensus_6771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [AAGTCGTGCTACTCNTGGAGNAATGTTTGCATGGAGATCTCTATCATATGTNCCATACNAATGAAGAGTGCTCCCCTGANAATATAGTCATTGAAAAACTTCGGCACTTTCTCAAAGCAGTATCTTTTATACATTCGAAATCGATCGTTCATTTGGATATCAAGCCTGAAAACATTCTTCTCCGACGTCCTCTCCCTCAATGTGATATCGCGTTGTGTGATTTTGGCCTAGCCAAGCATTTGCGGACAAACGAAGTTATCAGAGACCTTGTAGGTACACCAGATTATGCTGCTCCAGAAGTTTTGAACTATGATCCTATTCATCTCACAACAGATATTTGGAGTGTTGGTGTTGTTGTTTATTATTTGTTAACTGGTGAAAGTCCATTCTGGAACGAGAGTAAAGAACATACTCTTCTAAACGTTTGCCAATTAAATATCTCTTATCCTGACCACTTATTCCAAGATATTTCCATGGGAGCAACGTCTTTTATGAAGCGCTTAATCCAAAAGAATCCAAGAGATCGCCCATCAGCTGTTGATTGCTTCAATGATCCATGGCTTAGTTCTGCAACGTGCGCTGACACATTCAATACCGATAACTCTAGCCAATGTGGACTAGTTTCCGTATCACAGGATTTCAACAAATTAGATGACTAGAGTTTTGTAAAAGAATATTAACACTAAAT] [-] EMBL CD151650 [AAGTCGTGCTACTCNTGGAGNAATGTTTGCATGGAGATCTCTATCATATGTNCCATACNAATGAAGAGTGCTCCCCTGANAATATAGTCATTGAAAAACTTCGGCACTTTCTCAAAGCAGTATCTTTTATACATTCGAAATCGATCGTTCATTTGGATATCAAGCCTGAAAACATTCTTCTCCGACGTCCTCTCCCTCAATGTGATATCGCGTTGTGTGATTTTGGCCTAGCCAAGCATTTGCGGACAAACGAAGTTATCAGAGACCTTGTAGGTACACCAGATTATGCTGCTCCAGAAGTTTTGAACTATGATCCTATTCATCTCACAACAGATATTTGGAGTGTTGGTGTTGTTGTTTATTATTTGTTAACTGGTGAAAGTCCATTCTGGAACGAGAGTAAAGAACATACTCTTCTAAACGTTTGCCAATTAAATATCTCTTATCCTGACCACTTATTCCAAGATATTTCCATGGGAGCAACGTCTTTTATGAAGCGCTTAATCCAAAAGAATCCAAGAGATCGCCCATCAGCTGTTGATTGCTTCAATGATCCATGGCTTAGTTCTGCAACGTGCGCTGACACATTCAATACCGATAACTCTAGCCAATGTGGACTAGTTTCCGTATCACAGGATTTCAACAAATTAGATGACTAGAGTTTTGTAAAAGAATATTAACACTAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6771#0 -----------------CCATTATNTCGGCACGAGGG-----ATCATTATGTCCATTACA 38 consensus_6771#1 AAGTCGTGCTACTCNTGGAGNAATGTTTGCATGGAGATCTCTATCATATGTNCCATACNA 60 ** * *** * * ***** **** * consensus_6771#0 ATGAAGAGTTGCTTCCTGAAAATATAGTCATTGAAATACTTCGGCAACTTCTCAAAGCAG 98 consensus_6771#1 ATGAAGAGTGCTCCCCTGANAATATAGTCATTGAAAAACTTCGGCACTTTCTCAAAGCAG 120 ********* ***** **************** ********* ************ consensus_6771#0 TATCTTTTATACATTCGAAATCGATCGTTCATTTGGATATCAAGCCTGAAAACATTCTTC 158 consensus_6771#1 TATCTTTTATACATTCGAAATCGATCGTTCATTTGGATATCAAGCCTGAAAACATTCTTC 180 ************************************************************ consensus_6771#0 TCCGACGTCCTCTCCCTCAATGTGATATCGCGTTGTGTGATTTTGGCCTAGCCAAGCATT 218 consensus_6771#1 TCCGACGTCCTCTCCCTCAATGTGATATCGCGTTGTGTGATTTTGGCCTAGCCAAGCATT 240 ************************************************************ consensus_6771#0 TGCGGACAAACGAAGTTATCAGAGACCTTGTAGGTACACCAGATTATGCTGCTCCAGAAG 278 consensus_6771#1 TGCGGACAAACGAAGTTATCAGAGACCTTGTAGGTACACCAGATTATGCTGCTCCAGAAG 300 ************************************************************ consensus_6771#0 TTTTGAACTATGATCCTATTCATCTCACAACAGATATTTGGAGTGTTGGTGTTGTTGTTT 338 consensus_6771#1 TTTTGAACTATGATCCTATTCATCTCACAACAGATATTTGGAGTGTTGGTGTTGTTGTTT 360 ************************************************************ consensus_6771#0 ATTATTTGTTAACTGGTGAAAGTCCATTCTGGAACGAGAGTAAAGAACATACTCTTCTAA 398 consensus_6771#1 ATTATTTGTTAACTGGTGAAAGTCCATTCTGGAACGAGAGTAAAGAACATACTCTTCTAA 420 ************************************************************ consensus_6771#0 ACGTTTGCCAATTAAATATCTCTTATCCTGACCACTTATTCCAAGATATTTCCATGGGAG 458 consensus_6771#1 ACGTTTGCCAATTAAATATCTCTTATCCTGACCACTTATTCCAAGATATTTCCATGGGAG 480 ************************************************************ consensus_6771#0 CAATGTCTTTTATGAAGCGCTTAATCCAAAAGAATCCAAGAGATCGCCCATCAGCTGTTG 518 consensus_6771#1 CAACGTCTTTTATGAAGCGCTTAATCCAAAAGAATCCAAGAGATCGCCCATCAGCTGTTG 540 *** ******************************************************** consensus_6771#0 ATTGCTTCAATGATCCATGGCTTAGTTCTGCAACGTGCGCTGACACATTCAATACCGATA 578 consensus_6771#1 ATTGCTTCAATGATCCATGGCTTAGTTCTGCAACGTGCGCTGACACATTCAATACCGATA 600 ************************************************************ consensus_6771#0 ACTCTAGCCAATGTGGACTAGTTTCCGTATCACAGGATTTCAACAAATTAGATGACTAGA 638 consensus_6771#1 ACTCTAGCCAATGTGGACTAGTTTCCGTATCACAGGATTTCAACAAATTAGATGACTAGA 660 ************************************************************ consensus_6771#0 GTTTTGTAAAAGAATATTAACACTAAATCCTCATCAACTGTGTATAAAGACTACTCTAAG 698 consensus_6771#1 GTTTTGTAAAAGAATATTAACACTAAAT-------------------------------- 688 **************************** consensus_6771#0 AATTATTCATTTATTTTCTTCCTTTTCATAAAAGAAATTTAAATGTACACTACATGCATA 758 consensus_6771#1 ------------------------------------------------------------ consensus_6771#0 AATATTCACAAGTACATTATGTAGTTTATTTTTGATATTATGTTCCGTCGTTTATGTCCG 818 consensus_6771#1 ------------------------------------------------------------ consensus_6771#0 TTTTGTATTTGACCTGTACACTCGCTTGTCTGTTCAGCAGTGTTNTGTCTTCAATTTAAA 878 consensus_6771#1 ------------------------------------------------------------ consensus_6771#0 TAAAANNNT 887 consensus_6771#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||