These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6779#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 980 fasta sequence [GCTTGAAAACAAACTGTTGCGACTTAAGATCTATGAAATCACGTTACAAAGAATAGCAAAACTTATTTACTGAGTGTAGATATATGTACTCAGCTTTGAGTTACAAACAACAAAAATAATATGGTTTACTAGAATTTACTCAGTGACCTCGAAGACGAGTATATAAGTCAGATCAAACACATATATCGAAATCTCGTGTACTGAATAAACACTAAATGTGTAAACGGTTATCGAATTCCTACGATTTCCTTGGACTTAAAATCCTATGGCAGAATTTTTTATGGAAAGTTATTATACAAAATGAAGTATTGAACACGCATACAATAAAATATTGCATACATAAGATAGATTGTGCAGCGTCAAAATTACAACTTTAATTAGAACAAACTCTTTGAAGTTGCTTTGTCGGACTAATCGTCACTGCATCATCATCGTCTACTTCTAACCTTCTCCGACGTTCGTGAGGGGCAAACAAAACAGTATGTCTTTGTGCAGGTGGCTTATCAACTAAATAACCGGAGTGTGGTGTACGGACTGGTTTCATTCCTTCCCAAGGGTCTGATAAACTGAATGCGATCCAATTCTTGAATGGACGGTTATTCTCATTGAATTTCCTGCTACCATTTCGTGGTGATCTTGAACTAATATCAAATGCTGAAGAATTGTGCTGAGAATTGTCATACTTCCAACTCAAATCGTCTTGAGTCGATACAAAAGAACCACTAGAAATTGAACCGGAGTGGATATTCATAGGTGGATTGCAGTTAGATATAAGTGGTGAGTGTGAGGCGTATGAGTTCATAGAAGAATCAAAGGTTCGTTGATAAGATGGTTGGTTGAAATTTGGTGAACCATAACGTGCAGGGGGACTATCGACATAATAAGATGTACAACCTACGGGCGGACTCCAACAAACTAGGGAGTCTTGTGGACATCGGGGAAATCTCCCGCTGCCAAATGGAGGTGTTGAAGTGATTGGC] [+] EMBL CD075622 [GCTTGAAAACAAACTGTTGCGACTTAAGATCTATGAAATCACGTTACAAAGAATAGCAAAACTTATTTACTGAGTGTAGATATATGTACTCAGCTTTGAGTTACAAACAACAAAAATAATATGGTTTACTAGAATTTACTCAGTGACCTCGAAGACGAGTATATAAGTCAGATCAAACACATATATCGAAATCTCGTGTACTGAATAAACACTAAATGTGTAAACGGTTATCGAATTCCTACGATTTCCTTGGACTTAAAATCCTATGGCAGAATTTTTTATGGAAAGTTATTATACAAAATGAAGTATTGAACACGCATACAATAAAATATTGCATACATAAGATAGATTGTGCAGCGTCAAAATTACAACTTTAATTAGAACAAACTCTTTGAAGTTGCTTTGTCGGACTAATCGTCACTGCATCATCATCGTCTACTTCTAACCTTCTCCGACGTTCGTGAGGGGCAAACAAAACAGTATGTCTTTGTGCAGGTGGCTTATCAACTAAATAACCGGAGTGTGGTGTACGGACTGGTTTCATTCCTTCCCAAGGGTCTGATAAACTGAATGCGATCCAATTCTTGAATGGACGGTTATTCTCATTGAATTTCCTGCTACCATTTCGTGGTGATCTTGAACTAATATCA ] [-] EMBL CD083937 [ GACTGGTTTCATTCCTTCCCAAGGGTCTGATAAACTGAATGCGATCCAATTCTTGAATGGACGGTTATTCTCATTGAATTTCCTGCTACCATTTCGTGGTGATCTTGAACTAATATCAAATGCTGAAGAATTGTGCTGAGAATTGTCATACTTCCAACTCAAATCGTCTTGAGTCGATACAAAAGAACCACTAGAAATTGAACCGGAGTGGATATTCATAGGTGGATTGCAGTTAGATATAAGTGGTGAGTGTGAGGCGTATGAGTTCATAGAAGAATCAAAGGTTCGTTGATAAGATGGTTGGTTGAAATTTGGTGAACCATAACGTGCAGGGGGACTATCGACATAATAAGATGTACAACCTACGGGCGGACTCCAACAAACTAGGGAGTCTTGTGGACATCGGGGAAATCTCCCGCTGCCAAATGGAGGTGTTGAAGTGATTGGC] [+] EMBL CD193973 [ AACCACTAGAAATTGAACCGGAGTGGATATTCATAGGTGGATTGCAGTTAGATATAAGTGGTGAGTGTGAGGCGTATGAGTTCATAGAAGAATCAAAGGTTCGTTGATAAGATGGTTGGTTGAAATTTGGTGAACCATAACGTGCAGGGGGACTATCGACATAATAAGATGTACAACCTACGGGCGGACTCCAACAAACTAGGGAGTCTTGTGGACATCGGGGAAATCTCCCGCTGCCAAATGGAGGTGTTGAAGTG ] consensusID : consensus_6779#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence [CTNTGTGCAGGTGGCTTATCAACTACATAACCGGAGTGTGGTGTACGGACTGGTTTCATTCCTTCNCAAGGGTCTGATAAACTGAATGCGATCCAATTCTTGAATGGACGGTTATTCTCATTGAATTTCCTGCTACCATTTCGTGGTGATCTTGAACTAATATCAAATGCTGAAGAATTGTGCTGAGAATTGTCATACTTCCAACTCAAATCGTCTTGAGTCGATACAAAAGAACCACTAGAAATTGAACCGGAGTGGATATTCATAGGTGGATTGCAGTTAGATATAAGTCCTCGTGCCGAATTCTGGCCGCG] [-] EMBL CD077740 [CTNTGTGCAGGTGGCTTATCAACTACATAACCGGAGTGTGGTGTACGGACTGGTTTCATTCCTTCNCAAGGGTCTGATAAACTGAATGCGATCCAATTCTTGAATGGACGGTTATTCTCATTGAATTTCCTGCTACCATTTCGTGGTGATCTTGAACTAATATCAAATGCTGAAGAATTGTGCTGAGAATTGTCATACTTCCAACTCAAATCGTCTTGAGTCGATACAAAAGAACCACTAGAAATTGAACCGGAGTGGATATTCATAGGTGGATTGCAGTTAGATATAAGTCCTCGTGCCGAATTCTGGCCGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6779#0 GCTTGAAAACAAACTGTTGCGACTTAAGATCTATGAAATCACGTTACAAAGAATAGCAAA 60 consensus_6779#1 ------------------------------------------------------------ consensus_6779#0 ACTTATTTACTGAGTGTAGATATATGTACTCAGCTTTGAGTTACAAACAACAAAAATAAT 120 consensus_6779#1 ------------------------------------------------------------ consensus_6779#0 ATGGTTTACTAGAATTTACTCAGTGACCTCGAAGACGAGTATATAAGTCAGATCAAACAC 180 consensus_6779#1 ------------------------------------------------------------ consensus_6779#0 ATATATCGAAATCTCGTGTACTGAATAAACACTAAATGTGTAAACGGTTATCGAATTCCT 240 consensus_6779#1 ------------------------------------------------------------ consensus_6779#0 ACGATTTCCTTGGACTTAAAATCCTATGGCAGAATTTTTTATGGAAAGTTATTATACAAA 300 consensus_6779#1 ------------------------------------------------------------ consensus_6779#0 ATGAAGTATTGAACACGCATACAATAAAATATTGCATACATAAGATAGATTGTGCAGCGT 360 consensus_6779#1 ------------------------------------------------------------ consensus_6779#0 CAAAATTACAACTTTAATTAGAACAAACTCTTTGAAGTTGCTTTGTCGGACTAATCGTCA 420 consensus_6779#1 ------------------------------------------------------------ consensus_6779#0 CTGCATCATCATCGTCTACTTCTAACCTTCTCCGACGTTCGTGAGGGGCAAACAAAACAG 480 consensus_6779#1 ------------------------------------------------------------ consensus_6779#0 TATGTCTTTGTGCAGGTGGCTTATCAACTAAATAACCGGAGTGTGGTGTACGGACTGGTT 540 consensus_6779#1 -----CTNTGTGCAGGTGGCTTATCAACTACATAACCGGAGTGTGGTGTACGGACTGGTT 55 ** ********************** ***************************** consensus_6779#0 TCATTCCTTCCCAAGGGTCTGATAAACTGAATGCGATCCAATTCTTGAATGGACGGTTAT 600 consensus_6779#1 TCATTCCTTCNCAAGGGTCTGATAAACTGAATGCGATCCAATTCTTGAATGGACGGTTAT 115 ********** ************************************************* consensus_6779#0 TCTCATTGAATTTCCTGCTACCATTTCGTGGTGATCTTGAACTAATATCAAATGCTGAAG 660 consensus_6779#1 TCTCATTGAATTTCCTGCTACCATTTCGTGGTGATCTTGAACTAATATCAAATGCTGAAG 175 ************************************************************ consensus_6779#0 AATTGTGCTGAGAATTGTCATACTTCCAACTCAAATCGTCTTGAGTCGATACAAAAGAAC 720 consensus_6779#1 AATTGTGCTGAGAATTGTCATACTTCCAACTCAAATCGTCTTGAGTCGATACAAAAGAAC 235 ************************************************************ consensus_6779#0 CACTAGAAATTGAACCGGAGTGGATATTCATAGGTGGATTGCAGTTAGATATAAGTGGTG 780 consensus_6779#1 CACTAGAAATTGAACCGGAGTGGATATTCATAGGTGGATTGCAGTTAGATATAAGTCCTC 295 ******************************************************** * consensus_6779#0 AGTGTGAGGCGTATGAGTTCATAGAAGAATCAAAGGTTCGTTGATAAGATGGTTGGTTGA 840 consensus_6779#1 -GTGCCGAAT-TCTGGCCGCG--------------------------------------- 314 *** * ** * consensus_6779#0 AATTTGGTGAACCATAACGTGCAGGGGGACTATCGACATAATAAGATGTACAACCTACGG 900 consensus_6779#1 ------------------------------------------------------------ consensus_6779#0 GCGGACTCCAACAAACTAGGGAGTCTTGTGGACATCGGGGAAATCTCCCGCTGCCAAATG 960 consensus_6779#1 ------------------------------------------------------------ consensus_6779#0 GAGGTGTTGAAGTGATTGGC 980 consensus_6779#1 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||