These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6795#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence [GTATTCGCTGTAGTCACCTACTTATGGTTTTATATAGAAACGAAAACACTAACATTAACTCTAAAGGATAATATCAGGGTTTGGGATCTTGGGACATCGATTGACGACAGCATTCATTCAGCTATTCAGAATCGATATCCGTACAGTGAAAATCCGTTAAACCTGAAGAGATTTCGTCAATCACTTTTCTTCATATTTCTTTTGATAATTGGATTTTTTGGTACCGGGAATATTGCTAGTATAAACAGTTTTGACCCACGTTCAACCTTTTGCTTCACGACAATATTAAATCCTGCCCTGATGGCCATTCTTTTGTTAATTAAGTAAGTACTGGAAAATCTACTGATCGGATACCAATGTCATTCGCAGTGATGAACTTGAGAAATCCCTCATTGACTGTTTGTTTGTCATCCTAAAGGATAAACTGGAATGTGTTTTCAGATAGCATTTGAAGTAATTTCACATTATAGCTCGGCACTATGTCCAATAATTACATATCTTTGATTATTTATAACTGATTGAGTTGTTACGGATATGCATTTAACCATCATAGATAATACTTNACAAACAACATGTAATGT] [+] EMBL CD079175 [GTATTCGCTGTAGTCACCTACTTATGGTTTTATATAGAAACGAAAACACTAACATTAACTCTAAAGGATAATATCAGGGTTTGGGATCTTGGGACATCGATTGACGACAGCATTCATTCAGCTATTCAGAATCGATATCCGTACAGTGAAAATCCGTTAAACCTGAAGAGATTTCGTCAATCACTTTTCTTCATATTTCTTTTGATAATTGGATTTTTTGGTACCGGGAATATTGCTAGTATAAACAGTTTTGACCCACGTTCAACCTTTTGCTTCACGACAATATTAAATCCTGCCCTGATGGCCATTCTTTTGTTAATTAAGTAAGTACTGGAAAATCTACTGATCGGATACCAATGTCATTCGCAGTGATGAACTTGAGAAATCCCTCATTGACTGTTTGTTTGTCATCCTAAAGGATAAACTGGAATGTGTTTTCAGATAGCATTTGAAGTAATTTCACATTATAGCTCGGCACTATGTCCAATAATTACATATCTTTGATTATTTATAACTGATTGAGTTGTTACGGATATGCATTTAACCATCATAGATAATACTTNACAAACAACATGTAATGT] consensusID : consensus_6795#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence [ACATGTTTATTAAATACTTTCAACAGCTTTTGATTTATGTTAAAATTCACTGAAAAACTTAACATTTCCCTTCCCAATAATGGAAAAAGAAATCCAGCTAAACTAATAGACATAGCGATGACGTAATGACTAATACTAGTCCCTATATCCAACCAACTACCTTCGTTTTTCAACCAAACAAAAAAGGGGATAGCTTTTAGGTTAAATAATACTGGAGTCACACCAGTTTGGGCCAAAATAAAAGGATATCCTCTTTTCGATCTTTGACTGGTGATAAACGACAAGTAATTGGCTGGATTGCCATTATGTAACTGGATAGCTGCATAGATCACACCCAAAAAGAGCATAGGACACATTACCTTAATTAACAAAAGAATGGCCATCAGGGCAGGATTTAAT] [+] EMBL CD075961 [ACATGTTTATTAAATACTTTCAACAGCTTTTGATTTATGTTAAAATTCACTGAAAAACTTAACATTTCCCTTCCCAATAATGGAAAAAGAAATCCAGCTAAACTAATAGACATAGCGATGACGTAATGACTAATACTAGTCCCTATATCCAACCAACTACCTTCGTTTTTCAACCAAACAAAAAAGGGGATAGCTTTTAGGTTAAATAATACTGGAGTCACACCAGTTTGGGCCAAAATAAAAGGATATCCTCTTTTCGATCTTTGACTGGTGATAAACGACAAGTAATTGGCTGGATTGCCATTATGTAACTGGATAGCTGCATAGATCACACCCAAAAAGAGCATAGGACACATTACCTTAATTAACAAAAGAATGGCCATCAGGGCAGGATTTAAT] consensusID : consensus_6795#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 364 fasta sequence [GTTTTTATTATTTGTTTCGAACAGAGTTGAAAGCACTGCCTACTCTGTGAACGCTTCTAAAACGTATTAAGGTTCAATTACATTTGAATTATTCTTTATGATATCTATTCCTAATTCATAACCTGTCTGTCTGTAACATCTTAATTTGCGTTACAGTAAGTACTGGAAAATCTACTGATCGGATACCAATGTCATTCGCAGTGATGAACTTGAGAAATCCCTCATTGACTGTTTGTTTGTCATCCTAAAGGATAAACTGGAATGTGTTTTCAGATAGCATTTGAAGTAATTTCACATTATAGCTCGGCACTATGTCCGAATATTACATATCTTTGATTATTTATAACTGATTGANGTGTTACNG] [+] EMBL CD165250 [GTTTTTATTATTTGTTTCGAACAGAGTTGAAAGCACTGCCTACTCTGTGAACGCTTCTAAAACGTATTAAGGTTCAATTACATTTGAATTATTCTTTATGATATCTATTCCTAATTCATAACCTGTCTGTCTGTAACATCTTAATTTGCGTTACAGTAAGTACTGGAAAATCTACTGATCGGATACCAATGTCATTCGCAGTGATGAACTTGAGAAATCCCTCATTGACTGTTTGTTTGTCATCCTAAAGGATAAACTGGAATGTGTTTTCAGATAGCATTTGAAGTAATTTCACATTATAGCTCGGCACTATGTCCGAATATTACATATCTTTGATTATTTATAACTGATTGANGTGTTACNG] consensusID : consensus_6795#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence [CTATATCCAACCAACTACCTTCGTCTTTCAACCAAACAAAGAAGTGGATAGCTATTAGGTTAGATAATACTGCAGTCACACCAGTTTGCGCCAAAATAGAATGATATCCTCTTTTCGATCTTTGACTGTTGATAGACGACGAGTAATTGTCTGGATTGCCACTATGTAACTGGATAGCTGCATAGATCACACCCAAAAAGAGCATAGGACACATTACCTAGATGAGGGAAAATTAAATTTTATCATACTGATTATGACATTTTAAATACCAAAGTGAAACAAAATAGCAATCCATATTTAGTATACCACTAAGATCGTTTGGTGACTTAATTGGACTCACATGNTGTTTTGTAAGTATTATCT] [+] EMBL CD165230 [CTATATCCAACCAACTACCTTCGTCTTTCAACCAAACAAAGAAGTGGATAGCTATTAGGTTAGATAATACTGCAGTCACACCAGTTTGCGCCAAAATAGAATGATATCCTCTTTTCGATCTTTGACTGTTGATAGACGACGAGTAATTGTCTGGATTGCCACTATGTAACTGGATAGCTGCATAGATCACACCCAAAAAGAGCATAGGACACATTACCTAGATGAGGGAAAATTAAATTTTATCATACTGATTATGACATTTTAAATACCAAAGTGAAACAAAATAGCAATCCATATTTAGTATACCACTAAGATCGTTTGGTGACTTAATTGGACTCACATGNTGTTTTGTAAGTATTATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6795#1 ------------------------------------------------------ACATGT 6 consensus_6795#3 ------------------------------------------------------------ consensus_6795#0 GTATTCGCTGTAGTCACCTACTTATGGTTTTATATAGAAACGAAAACACTAACATTAACT 60 consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 TTATTAAATACTTTCAACAGCTTTTGATTTATGTTAAAATTCACTGAAAAACTTAACATT 66 consensus_6795#3 ------------------------------------------------------------ consensus_6795#0 CTAAAGGATAATATCAGGGTTTGGGATCTTGGGACATCGATTGACGACAGCATTCATTCA 120 consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 TCCCTTCCCAATAATGGAAAAAGAAATCCAGCTAAACTAATAGACATAGCGATGACGTAA 126 consensus_6795#3 ------------------------------------------------------------ consensus_6795#0 GCTATTCAGAATCGATATCCGTACAGTGAAAATCCGTTAAACCTGAAGAGATTTCGTCAA 180 consensus_6795#2 ------------------------------------------------------------ consensus_6795#1 TGACTAATACTAGTCCCTATATCCAACC-AACTACCTTCGTTTTTCAACCAAACAAAAAA 185 consensus_6795#3 ----------------CTATATCCAACC-AACTACCTTCGTCTTTCAACCAAACAAAGAA 43 consensus_6795#0 TCACTTTTCTTCATATTTCTTTTGAT---AATTGGATTTTTTG---GTACCGGGAATATT 234 consensus_6795#2 -----GTTTTTATTATTTGTTTCGAACAGAGTTGAAAGCACTGCCTACTCTGTGAACGCT 55 * * * * * * * ** consensus_6795#1 GGGGATAGCTTTTAGG-TTAAATAATACTGGAGTCACACCAGTTTGGGCCAAAATAAAAG 244 consensus_6795#3 GTGGATAGCTATTAGG-TTAGATAATACTGCAGTCACACCAGTTTGCGCCAAAATAGAAT 102 consensus_6795#0 GCTAGTATAAAC-AGTTTTGACCCACGTTCAACCTTTTGCTTCACGACAA----TATTAA 289 consensus_6795#2 TCTAAAACGTATTAAGGTTCAATTACATTTGAATTATT-CTTTATGATATCTATTCCTAA 114 * * ** * * * * * * * consensus_6795#1 GATATCCTCTTTTCGATCTTTGACTGGTGATAAACGACA-AGTAATTGGCTGGATTGCCA 303 consensus_6795#3 GATATCCTCTTTTCGATCTTTGACTGTTGATAGACGACG-AGTAATTGTCTGGATTGCCA 161 consensus_6795#0 ATCCTGCCCTGATGGCCATTCTTTTGTTAATTA-------AGTAAGTACTGGAAAATCTA 342 consensus_6795#2 TTCATAACCTGTCTGTCTGTAACATCTTAATTTGCGTTACAGTAAGTACTGGAAAATCTA 174 * ** * * * * ** ***** * * * * * consensus_6795#1 TTATGTAACTG-----GATAGCTGCATAGATCACACCCAAAAAGAGCATAG-GACACATT 357 consensus_6795#3 CTATGTAACTG-----GATAGCTGCATAGATCACACCCAAAAAGAGCATAG-GACACATT 215 consensus_6795#0 CTGATCGGATACCAATGTCATTCGCAGTGATGAACTTGAGAAATCCCTCATTGACTGTTT 402 consensus_6795#2 CTGATCGGATACCAATGTCATTCGCAGTGATGAACTTGAGAAATCCCTCATTGACTGTTT 234 * * * * *** *** * * *** * * *** ** consensus_6795#1 ACCTTAATTAACAAAAG--AATGGCCATCAGGGCAGGATTTAAT---------------- 399 consensus_6795#3 ACCTAGATGAGGGAAAATTAAATTTTATCATA-CTGATTATGACATTTTAAATACCAAAG 274 consensus_6795#0 GTTTGTCATCCTAAAGGATAAACTGGAATGTGTTTTCAGATAGCATTTGAAGTAATTTCA 462 consensus_6795#2 GTTTGTCATCCTAAAGGATAAACTGGAATGTGTTTTCAGATAGCATTTGAAGTAATTTCA 294 * ** ** * * consensus_6795#1 ------------------------------------------------------------ consensus_6795#3 TGAAACAAAATAGCAATCCAT--ATTTAGTATACCACTAAGATCGTTTGGTGACTTAATT 332 consensus_6795#0 CATTATAGCTCGGCACTATGTCCAATAATTACATATCTTTGATTATTTA--TAACTGATT 520 consensus_6795#2 CATTATAGCTCGGCACTATGTCCGAATATTACATATCTTTGATTATTTA--TAACTGATT 352 consensus_6795#1 ------------------------------------------------------------ consensus_6795#3 GGACTCACATGNTGTTTTGTAAGTATTATCT----------------------------- 363 consensus_6795#0 GAGTTGTTACGGATATGCATTTAACCATCATAGATAATACTTNACAAACAACATGTAATG 580 consensus_6795#2 GANGTGTTACNG------------------------------------------------ 364 consensus_6795#1 - consensus_6795#3 - consensus_6795#0 T 581 consensus_6795#2 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||