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Schistosoma mansoni
cluster # 6798 cluster # 6798       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6798#0 length = 1277 sequences # 1  
consensus_6798#1 length = 510 sequences # 2  
consensus_6798#2 length = 201 sequences # 1  

consensusID : consensus_6798#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1277
fasta sequence
                              [CCANAATTCGGCACCAGAAACAGTTGAGATTTTTTCTGACAAATTACAGAAACTTTAANTACAGTAATTACAAAATATTTCCTATTAATTACTCATGATTACATACATGACTTCAAAATATTACATAAATACTTTGCCAATACTACTCATCCTTATTGAAAAACTACATGAAATTACTTCTGCATGATACTGTAAATTGGATTCAAAGTTACTGTTTATCTAAAGTTGTCATCTTCAACTGACGTCAGTTAGGACGATGATTTAATTGATTGAAGCATTACAGTTTTGATCTATTTGTTTAAATCGTGCTTTGTCTGTTTTTAGGCAACCGGATAGCATCATTCACTTACAACCGACTGATTTATCATTGAATGGTGACCAGTATTATGTTTATCTAATCATTTAGTCCTAATCGAATTCTACCAATCAATTTGTATTGTGGTCACTAGTCTAAGTGACTCGATATCGTATGGACTATGTTGAGATTTTATGTAGTTGTGCGTATTCGGCAATCAGCCTTGCTTATCCTAGGTTCCGTACCAGCTAACACTCATCATCGGTCTTGAGAGTACTGATGGTTCCTGTGGGATTCGAACCCGTATCATTCAGCCTCATTGTTTGAAAAGTTATCTCTGAGCTATTTGGGTTTCCAGTGATGATTTTACAACTGCAGAAAGTAATGCGAATCATAATGTACTTAAATTTTTGTTAACAGTGTTATGTTTTTATATTTTTTTGTTTCCAAAACAATTAGTCCACAAATTTCACGTGTCGATACTCTATCAGAATCATGGGCAAATATGTGGATGAAACTGGCATCTAGTTGGTTAGCTTTAATATTGTATGCATGGACTATAGCTTGTCCACGACTGTGTATTGGTCGAAAACTTGGTGCAGTTCCATTTACACCGCGTACACCACGTGCCTAAATCTCACAAACTATGCCAATTGTTTANTATGTTTGTATGGGAGAGAGAGAAGNNTGAAGCTGATCCATCCAACTTTTGTGTTAAGATATTTCTACTCAACGAAAGAATGTCTCTGTGATATTTTTGGGGTTTTGCTACAACATTGTCATGAAGTCATCCATTAAAAGACAAATTACATTTGCAGTATATGACGCATATTGATCTAAGATCTATTTTACAGAATTGCATAGTTTTTCCGCTCCATGAAAGACCTCGTTACATTATTATTGGACAATGGACACATTAAAGTTATGTGATACGTCCTTCCTGAGATGCTATTTACTGTTTAAAAGTCCTCCTTTAAAATTT]

[+] EMBL CD081212             [CCANAATTCGGCACCAGAAACAGTTGAGATTTTTTCTGACAAATTACAGAAACTTTAANTACAGTAATTACAAAATATTTCCTATTAATTACTCATGATTACATACATGACTTCAAAATATTACATAAATACTTTGCCAATACTACTCATCCTTATTGAAAAACTACATGAAATTACTTCTGCATGATACTGTAAATTGGATTCAAAGTTACTGTTTATCTAAAGTTGTCATCTTCAACTGACGTCAGTTAGGACGATGATTTAATTGATTGAAGCATTACAGTTTTGATCTATTTGTTTAAATCGTGCTTTGTCTGTTTTTAGGCAACCGGATAGCATCATTCACTTACAACCGACTGATTTATCATTGAATGGTGACCAGTATTATGTTTATCTAATCATTTAGTCCTAATCGAATTCTACCAATCAATTTGTATTGTGGTCACTAGTCTAAGTGACTCGATATCGTATGGACTATGTTGAGATTTTATGTAGTTGTGCGTATTCGGCAATCAGCCTTGCTTATCCTAGGTTCCGTACCAGCTAACACTCATCATCGGTCTTGAGAGTACTGATGGTTCCTGTGGGATTCGAACCCGTATCATTCAGCCTCATTGTTTGAAAAGTTATCTCTGAGCTATTTGGGTTTCCAGTGATGATTTTACAACTGCAGAAAGTAATGCGAATCATAATGTACTTAAATTTTTGTTAACAGTGTTATGTTTTTATATTTTTTTGTTTCCAAAACAATTAGTCCACAAATTTCACGTGTCGATACTCTATCAGAATCATGGGCAAATATGTGGATGAAACTGGCATCTAGTTGGTTAGCTTTAATATTGTATGCATGGACTATAGCTTGTCCACGACTGTGTATTGGTCGAAAACTTGGTGCAGTTCCATTTACACCGCGTACACCACGTGCCTAAATCTCACAAACTATGCCAATTGTTTANTATGTTTGTATGGGAGAGAGAGAAGNNTGAAGCTGATCCATCCAACTTTTGTGTTAAGATATTTCTACTCAACGAAAGAATGTCTCTGTGATATTTTTGGGGTTTTGCTACAACATTGTCATGAAGTCATCCATTAAAAGACAAATTACATTTGCAGTATATGACGCATATTGATCTAAGATCTATTTTACAGAATTGCATAGTTTTTCCGCTCCATGAAAGACCTCGTTACATTATTATTGGACAATGGACACATTAAAGTTATGTGATACGTCCTTCCTGAGATGCTATTTACTGTTTAAAAGTCCTCCTTTAAAATTT]


>consensus_6798#0 CCANAATTCGGCACCAGAAACAGTTGAGATTTTTTCTGACAAATTACAGAAACTTTAANT ACAGTAATTACAAAATATTTCCTATTAATTACTCATGATTACATACATGACTTCAAAATA TTACATAAATACTTTGCCAATACTACTCATCCTTATTGAAAAACTACATGAAATTACTTC TGCATGATACTGTAAATTGGATTCAAAGTTACTGTTTATCTAAAGTTGTCATCTTCAACT GACGTCAGTTAGGACGATGATTTAATTGATTGAAGCATTACAGTTTTGATCTATTTGTTT AAATCGTGCTTTGTCTGTTTTTAGGCAACCGGATAGCATCATTCACTTACAACCGACTGA TTTATCATTGAATGGTGACCAGTATTATGTTTATCTAATCATTTAGTCCTAATCGAATTC TACCAATCAATTTGTATTGTGGTCACTAGTCTAAGTGACTCGATATCGTATGGACTATGT TGAGATTTTATGTAGTTGTGCGTATTCGGCAATCAGCCTTGCTTATCCTAGGTTCCGTAC CAGCTAACACTCATCATCGGTCTTGAGAGTACTGATGGTTCCTGTGGGATTCGAACCCGT ATCATTCAGCCTCATTGTTTGAAAAGTTATCTCTGAGCTATTTGGGTTTCCAGTGATGAT TTTACAACTGCAGAAAGTAATGCGAATCATAATGTACTTAAATTTTTGTTAACAGTGTTA TGTTTTTATATTTTTTTGTTTCCAAAACAATTAGTCCACAAATTTCACGTGTCGATACTC TATCAGAATCATGGGCAAATATGTGGATGAAACTGGCATCTAGTTGGTTAGCTTTAATAT TGTATGCATGGACTATAGCTTGTCCACGACTGTGTATTGGTCGAAAACTTGGTGCAGTTC CATTTACACCGCGTACACCACGTGCCTAAATCTCACAAACTATGCCAATTGTTTANTATG TTTGTATGGGAGAGAGAGAAGNNTGAAGCTGATCCATCCAACTTTTGTGTTAAGATATTT CTACTCAACGAAAGAATGTCTCTGTGATATTTTTGGGGTTTTGCTACAACATTGTCATGA AGTCATCCATTAAAAGACAAATTACATTTGCAGTATATGACGCATATTGATCTAAGATCT ATTTTACAGAATTGCATAGTTTTTCCGCTCCATGAAAGACCTCGTTACATTATTATTGGA CAATGGACACATTAAAGTTATGTGATACGTCCTTCCTGAGATGCTATTTACTGTTTAAAA GTCCTCCTTTAAAATTT



consensusID : consensus_6798#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 510
fasta sequence
                              [GACTATAGCTTGTCCACGACTGTGTATTGGTCGAAAACTTGGTGCAGTTCCATTTACACCGCGTACACCACGTGCTAAAATCTCACAAACTATGCCAATTGTTTAGTATGTTTGTATGGGAGAGAGAGAGGTTGGAAGCTGATCCATCCAACTTTTGTGTAAAGATTATTCTACTCCAAACGAAAGA--TTGTC-TTCTGTGATATTTTTGGTGTTTTGCCTACCAACATATGTCATGAAGTCAATACAATTAAAAGACAAAATTAACATTTGCAAGTATTATGACAGCATATATGTATCTTAAAGATCTCATTTTTCACAGGATATTGCATAAGTTTTTTTCGCGCTTCCATTGAGAAAGATCCTTCTGTTACCAATATATATATATAGGACGACATGGAACACATATTTAAGAGTTTATTGATGGAATCATGTACCCTTTCCTTTGAAGTATGCTTATATTTAACTGTATTTTAAAAAAGTTCACTTCACTTTAAAGAATTATAAATAGTA]

[-] EMBL CD075992             [GACTATAGCTTGTCCACGACTGTGTATTGGTCGAAAACTTGGTGCAGTTCCATTTACACCGCGTACACCACGTGCTAAAATCTCACAAACTATGCCAATTGTTTAGTATGTTTGTATGGGAGAGAGAGAGGTTGGAAGCTGATCCATCCAACTTTTGTGTAAAGATTATTCTACTCCAAACGAAAGA  TTGTC TTCTGTGATATTTTTGGTGTTTTGCCTACCAACATATGTCATGAAGTCAATACAATTAAAAGACAAAATTAACATTTGCAAGTATTATGACAGCATATATGTATCTTAAAGATCTCATTTTTCACAGGATATTGCATAAGTTTTTTTCGCGCTTCCATTGAGAAAGATCCTTCTGTTACCAATATATATATATAGGACGACATGGAACACATATTTAAGAGTTTATTGATGGAATCATGTACCCTTTCCTTTGAAGTATGCTTATATTTAACTGTATTTTAAAAAAGTTCACTTCACTTTAAAGAATTATAAATAGTA]
[-] EMBL CD162543             [                                                                                                                                                                              TCCAAACGAAAGANNNTGTCTTTCTGTGATATTTTTGGTGTTTTGCCTACCAACATATGTCATGAAGTCAATACAATTAAAAGACAAAATTAACATTTGCAAGT                                                                                                                                                                                                                                           ]


>consensus_6798#1 GACTATAGCTTGTCCACGACTGTGTATTGGTCGAAAACTTGGTGCAGTTCCATTTACACC GCGTACACCACGTGCTAAAATCTCACAAACTATGCCAATTGTTTAGTATGTTTGTATGGG AGAGAGAGAGGTTGGAAGCTGATCCATCCAACTTTTGTGTAAAGATTATTCTACTCCAAA CGAAAGATTGTCTTCTGTGATATTTTTGGTGTTTTGCCTACCAACATATGTCATGAAGTC AATACAATTAAAAGACAAAATTAACATTTGCAAGTATTATGACAGCATATATGTATCTTA AAGATCTCATTTTTCACAGGATATTGCATAAGTTTTTTTCGCGCTTCCATTGAGAAAGAT CCTTCTGTTACCAATATATATATATAGGACGACATGGAACACATATTTAAGAGTTTATTG ATGGAATCATGTACCCTTTCCTTTGAAGTATGCTTATATTTAACTGTATTTTAAAAAAGT TCACTTCACTTTAAAGAATTATAAATAGTA



consensusID : consensus_6798#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 201
fasta sequence
                              [GGAGAGAGAGAGGTTGGAAGCTGATCCATCCAACTTTTGCGTAAAGATTATTCTACTCCAAACGAAAGATTGTCTTCTGTGATATTTTTGGTGTTTTGCCTACCAACATATGTCAGAAGTCAATACAATTAAAAGACAAAATTAACATTTGCAAGTATTATGACAGCATATATGTATCTTAAAGATCTTAAAGATCTATTT]

[+] EMBL SMAA69071            [GGAGAGAGAGAGGTTGGAAGCTGATCCATCCAACTTTTGCGTAAAGATTATTCTACTCCAAACGAAAGATTGTCTTCTGTGATATTTTTGGTGTTTTGCCTACCAACATATGTCAGAAGTCAATACAATTAAAAGACAAAATTAACATTTGCAAGTATTATGACAGCATATATGTATCTTAAAGATCTTAAAGATCTATTT]


>consensus_6798#2 GGAGAGAGAGAGGTTGGAAGCTGATCCATCCAACTTTTGCGTAAAGATTATTCTACTCCA AACGAAAGATTGTCTTCTGTGATATTTTTGGTGTTTTGCCTACCAACATATGTCAGAAGT CAATACAATTAAAAGACAAAATTAACATTTGCAAGTATTATGACAGCATATATGTATCTT AAAGATCTTAAAGATCTATTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6798#1      ------------------------------------------------------------
consensus_6798#2      ------------------------------------------------------------
consensus_6798#0      CCANAATTCGGCACCAGAAACAGTTGAGATTTTTTCTGACAAATTACAGAAACTTTAANT 60
                                                                                  

consensus_6798#1      ------------------------------------------------------------
consensus_6798#2      ------------------------------------------------------------
consensus_6798#0      ACAGTAATTACAAAATATTTCCTATTAATTACTCATGATTACATACATGACTTCAAAATA 120
                                                                                  

consensus_6798#1      ------------------------------------------------------------
consensus_6798#2      ------------------------------------------------------------
consensus_6798#0      TTACATAAATACTTTGCCAATACTACTCATCCTTATTGAAAAACTACATGAAATTACTTC 180
                                                                                  

consensus_6798#1      ------------------------------------------------------------
consensus_6798#2      ------------------------------------------------------------
consensus_6798#0      TGCATGATACTGTAAATTGGATTCAAAGTTACTGTTTATCTAAAGTTGTCATCTTCAACT 240
                                                                                  

consensus_6798#1      ------------------------------------------------------------
consensus_6798#2      ------------------------------------------------------------
consensus_6798#0      GACGTCAGTTAGGACGATGATTTAATTGATTGAAGCATTACAGTTTTGATCTATTTGTTT 300
                                                                                  

consensus_6798#1      ------------------------------------------------------------
consensus_6798#2      ------------------------------------------------------------
consensus_6798#0      AAATCGTGCTTTGTCTGTTTTTAGGCAACCGGATAGCATCATTCACTTACAACCGACTGA 360
                                                                                  

consensus_6798#1      ------------------------------------------------------------
consensus_6798#2      ------------------------------------------------------------
consensus_6798#0      TTTATCATTGAATGGTGACCAGTATTATGTTTATCTAATCATTTAGTCCTAATCGAATTC 420
                                                                                  

consensus_6798#1      ------------------------------------------------------------
consensus_6798#2      ------------------------------------------------------------
consensus_6798#0      TACCAATCAATTTGTATTGTGGTCACTAGTCTAAGTGACTCGATATCGTATGGACTATGT 480
                                                                                  

consensus_6798#1      ------------------------------------------------------------
consensus_6798#2      ------------------------------------------------------------
consensus_6798#0      TGAGATTTTATGTAGTTGTGCGTATTCGGCAATCAGCCTTGCTTATCCTAGGTTCCGTAC 540
                                                                                  

consensus_6798#1      ------------------------------------------------------------
consensus_6798#2      ------------------------------------------------------------
consensus_6798#0      CAGCTAACACTCATCATCGGTCTTGAGAGTACTGATGGTTCCTGTGGGATTCGAACCCGT 600
                                                                                  

consensus_6798#1      ------------------------------------------------------------
consensus_6798#2      ------------------------------------------------------------
consensus_6798#0      ATCATTCAGCCTCATTGTTTGAAAAGTTATCTCTGAGCTATTTGGGTTTCCAGTGATGAT 660
                                                                                  

consensus_6798#1      ------------------------------------------------------------
consensus_6798#2      ------------------------------------------------------------
consensus_6798#0      TTTACAACTGCAGAAAGTAATGCGAATCATAATGTACTTAAATTTTTGTTAACAGTGTTA 720
                                                                                  

consensus_6798#1      ------------------------------------------------------------
consensus_6798#2      ------------------------------------------------------------
consensus_6798#0      TGTTTTTATATTTTTTTGTTTCCAAAACAATTAGTCCACAAATTTCACGTGTCGATACTC 780
                                                                                  

consensus_6798#1      ------------------------------------------------------------
consensus_6798#2      ------------------------------------------------------------
consensus_6798#0      TATCAGAATCATGGGCAAATATGTGGATGAAACTGGCATCTAGTTGGTTAGCTTTAATAT 840
                                                                                  

consensus_6798#1      ----------GACTATAGCTTGTCCACGACTGTGTATTGGTCGAAAACTTGGTGCAGTTC 50
consensus_6798#2      ------------------------------------------------------------
consensus_6798#0      TGTATGCATGGACTATAGCTTGTCCACGACTGTGTATTGGTCGAAAACTTGGTGCAGTTC 900
                                                                                  

consensus_6798#1      CATTTACACCGCGTACACCACGTGCTAAAATCTCACAAACTATGCCAATTGTTTAGTATG 110
consensus_6798#2      ------------------------------------------------------------
consensus_6798#0      CATTTACACCGCGTACACCACGTGCCTAAATCTCACAAACTATGCCAATTGTTTANTATG 960
                                                                                  

consensus_6798#1      TTTGTATGGGAGAGAGAGAGGTTGGAAGCTGATCCATCCAACTTTTGTGTAAAGATTATT 170
consensus_6798#2      --------GGAGAGAGAGAGGTTGGAAGCTGATCCATCCAACTTTTGCGTAAAGATTATT 52
consensus_6798#0      TTTGTATGGGAGAGAGAGAAGNNTGAAGCTGATCCATCCAACTTTTGTGTTAAGATATTT 1020
                              *********** *   *********************** ** *****  **

consensus_6798#1      CTACTCCAAACGAAAGATTGTCTTCTGTGATATTTTTGGTGTTTTGCCTACCAACATATG 230
consensus_6798#2      CTACTCCAAACGAAAGATTGTCTTCTGTGATATTTTTGGTGTTTTGCCTACCAACATATG 112
consensus_6798#0      CTACTC--AACGAAAGAATGTCT-CTGTGATATTTTTGGGGTTTTGCTA--CAACAT-TG 1074
                      ******  ********* ***** *************** *******    ****** **

consensus_6798#1      TCATGAAGTCAATACAATTAAAAGACAAAATTAACATTTGCAAGTATTATGACAGCATAT 290
consensus_6798#2      TCA-GAAGTCAATACAATTAAAAGACAAAATTAACATTTGCAAGTATTATGACAGCATAT 171
consensus_6798#0      TCATGAAGTCA--TCCATTAAAAGACAAA--TTACATTTGCA-GTAT----ATGACGCAT 1125
                      *** *******   * *************  * ********* ****    *   *  **

consensus_6798#1      ATGTATCTTAAAGATCTCATTTTTCACAGGATATTGCATAAGTTTTTTTCGCGCTTCCAT 350
consensus_6798#2      ATGTATCTTAAAGATCTTAAAGATC------TATTT------------------------ 201
consensus_6798#0      ATTGATCT--AAGATCT-ATTTTACAGA----ATTGCATAG--TTTTTCCGC---TCCAT 1173
                      **  ****  ******* *     *       ***                         

consensus_6798#1      TGAGAAAGATCCTTCTGTTACCAATATATATATATAGGACGACATGGAACACATATTTAA 410
consensus_6798#2      ------------------------------------------------------------
consensus_6798#0      ---GAAAGACCTC---GTTAC-ATTAT-----TATTGGACAAT---GGACACATT----A 1214
                                                                                  

consensus_6798#1      GAGTTTATTGATGGAATCATGTACCCTTTCCTTTGAAGTATGCTTATATTTAACTGTATT 470
consensus_6798#2      ------------------------------------------------------------
consensus_6798#0      AAGTTATGTGAT------ACGT---CCTTCCTGAGATGCTATTTACTGTTTAAAAGTCCT 1265
                                                                                  

consensus_6798#1      TTAAAAAAGTTCACTTCACTTTAAAGAATTATAAATAGTA 510
consensus_6798#2      ----------------------------------------
consensus_6798#0      CCTTTAAAATTT---------------------------- 1277
                                                              




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)