These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6798#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1277 fasta sequence [CCANAATTCGGCACCAGAAACAGTTGAGATTTTTTCTGACAAATTACAGAAACTTTAANTACAGTAATTACAAAATATTTCCTATTAATTACTCATGATTACATACATGACTTCAAAATATTACATAAATACTTTGCCAATACTACTCATCCTTATTGAAAAACTACATGAAATTACTTCTGCATGATACTGTAAATTGGATTCAAAGTTACTGTTTATCTAAAGTTGTCATCTTCAACTGACGTCAGTTAGGACGATGATTTAATTGATTGAAGCATTACAGTTTTGATCTATTTGTTTAAATCGTGCTTTGTCTGTTTTTAGGCAACCGGATAGCATCATTCACTTACAACCGACTGATTTATCATTGAATGGTGACCAGTATTATGTTTATCTAATCATTTAGTCCTAATCGAATTCTACCAATCAATTTGTATTGTGGTCACTAGTCTAAGTGACTCGATATCGTATGGACTATGTTGAGATTTTATGTAGTTGTGCGTATTCGGCAATCAGCCTTGCTTATCCTAGGTTCCGTACCAGCTAACACTCATCATCGGTCTTGAGAGTACTGATGGTTCCTGTGGGATTCGAACCCGTATCATTCAGCCTCATTGTTTGAAAAGTTATCTCTGAGCTATTTGGGTTTCCAGTGATGATTTTACAACTGCAGAAAGTAATGCGAATCATAATGTACTTAAATTTTTGTTAACAGTGTTATGTTTTTATATTTTTTTGTTTCCAAAACAATTAGTCCACAAATTTCACGTGTCGATACTCTATCAGAATCATGGGCAAATATGTGGATGAAACTGGCATCTAGTTGGTTAGCTTTAATATTGTATGCATGGACTATAGCTTGTCCACGACTGTGTATTGGTCGAAAACTTGGTGCAGTTCCATTTACACCGCGTACACCACGTGCCTAAATCTCACAAACTATGCCAATTGTTTANTATGTTTGTATGGGAGAGAGAGAAGNNTGAAGCTGATCCATCCAACTTTTGTGTTAAGATATTTCTACTCAACGAAAGAATGTCTCTGTGATATTTTTGGGGTTTTGCTACAACATTGTCATGAAGTCATCCATTAAAAGACAAATTACATTTGCAGTATATGACGCATATTGATCTAAGATCTATTTTACAGAATTGCATAGTTTTTCCGCTCCATGAAAGACCTCGTTACATTATTATTGGACAATGGACACATTAAAGTTATGTGATACGTCCTTCCTGAGATGCTATTTACTGTTTAAAAGTCCTCCTTTAAAATTT] [+] EMBL CD081212 [CCANAATTCGGCACCAGAAACAGTTGAGATTTTTTCTGACAAATTACAGAAACTTTAANTACAGTAATTACAAAATATTTCCTATTAATTACTCATGATTACATACATGACTTCAAAATATTACATAAATACTTTGCCAATACTACTCATCCTTATTGAAAAACTACATGAAATTACTTCTGCATGATACTGTAAATTGGATTCAAAGTTACTGTTTATCTAAAGTTGTCATCTTCAACTGACGTCAGTTAGGACGATGATTTAATTGATTGAAGCATTACAGTTTTGATCTATTTGTTTAAATCGTGCTTTGTCTGTTTTTAGGCAACCGGATAGCATCATTCACTTACAACCGACTGATTTATCATTGAATGGTGACCAGTATTATGTTTATCTAATCATTTAGTCCTAATCGAATTCTACCAATCAATTTGTATTGTGGTCACTAGTCTAAGTGACTCGATATCGTATGGACTATGTTGAGATTTTATGTAGTTGTGCGTATTCGGCAATCAGCCTTGCTTATCCTAGGTTCCGTACCAGCTAACACTCATCATCGGTCTTGAGAGTACTGATGGTTCCTGTGGGATTCGAACCCGTATCATTCAGCCTCATTGTTTGAAAAGTTATCTCTGAGCTATTTGGGTTTCCAGTGATGATTTTACAACTGCAGAAAGTAATGCGAATCATAATGTACTTAAATTTTTGTTAACAGTGTTATGTTTTTATATTTTTTTGTTTCCAAAACAATTAGTCCACAAATTTCACGTGTCGATACTCTATCAGAATCATGGGCAAATATGTGGATGAAACTGGCATCTAGTTGGTTAGCTTTAATATTGTATGCATGGACTATAGCTTGTCCACGACTGTGTATTGGTCGAAAACTTGGTGCAGTTCCATTTACACCGCGTACACCACGTGCCTAAATCTCACAAACTATGCCAATTGTTTANTATGTTTGTATGGGAGAGAGAGAAGNNTGAAGCTGATCCATCCAACTTTTGTGTTAAGATATTTCTACTCAACGAAAGAATGTCTCTGTGATATTTTTGGGGTTTTGCTACAACATTGTCATGAAGTCATCCATTAAAAGACAAATTACATTTGCAGTATATGACGCATATTGATCTAAGATCTATTTTACAGAATTGCATAGTTTTTCCGCTCCATGAAAGACCTCGTTACATTATTATTGGACAATGGACACATTAAAGTTATGTGATACGTCCTTCCTGAGATGCTATTTACTGTTTAAAAGTCCTCCTTTAAAATTT] consensusID : consensus_6798#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 510 fasta sequence [GACTATAGCTTGTCCACGACTGTGTATTGGTCGAAAACTTGGTGCAGTTCCATTTACACCGCGTACACCACGTGCTAAAATCTCACAAACTATGCCAATTGTTTAGTATGTTTGTATGGGAGAGAGAGAGGTTGGAAGCTGATCCATCCAACTTTTGTGTAAAGATTATTCTACTCCAAACGAAAGA--TTGTC-TTCTGTGATATTTTTGGTGTTTTGCCTACCAACATATGTCATGAAGTCAATACAATTAAAAGACAAAATTAACATTTGCAAGTATTATGACAGCATATATGTATCTTAAAGATCTCATTTTTCACAGGATATTGCATAAGTTTTTTTCGCGCTTCCATTGAGAAAGATCCTTCTGTTACCAATATATATATATAGGACGACATGGAACACATATTTAAGAGTTTATTGATGGAATCATGTACCCTTTCCTTTGAAGTATGCTTATATTTAACTGTATTTTAAAAAAGTTCACTTCACTTTAAAGAATTATAAATAGTA] [-] EMBL CD075992 [GACTATAGCTTGTCCACGACTGTGTATTGGTCGAAAACTTGGTGCAGTTCCATTTACACCGCGTACACCACGTGCTAAAATCTCACAAACTATGCCAATTGTTTAGTATGTTTGTATGGGAGAGAGAGAGGTTGGAAGCTGATCCATCCAACTTTTGTGTAAAGATTATTCTACTCCAAACGAAAGA TTGTC TTCTGTGATATTTTTGGTGTTTTGCCTACCAACATATGTCATGAAGTCAATACAATTAAAAGACAAAATTAACATTTGCAAGTATTATGACAGCATATATGTATCTTAAAGATCTCATTTTTCACAGGATATTGCATAAGTTTTTTTCGCGCTTCCATTGAGAAAGATCCTTCTGTTACCAATATATATATATAGGACGACATGGAACACATATTTAAGAGTTTATTGATGGAATCATGTACCCTTTCCTTTGAAGTATGCTTATATTTAACTGTATTTTAAAAAAGTTCACTTCACTTTAAAGAATTATAAATAGTA] [-] EMBL CD162543 [ TCCAAACGAAAGANNNTGTCTTTCTGTGATATTTTTGGTGTTTTGCCTACCAACATATGTCATGAAGTCAATACAATTAAAAGACAAAATTAACATTTGCAAGT ] consensusID : consensus_6798#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence [GGAGAGAGAGAGGTTGGAAGCTGATCCATCCAACTTTTGCGTAAAGATTATTCTACTCCAAACGAAAGATTGTCTTCTGTGATATTTTTGGTGTTTTGCCTACCAACATATGTCAGAAGTCAATACAATTAAAAGACAAAATTAACATTTGCAAGTATTATGACAGCATATATGTATCTTAAAGATCTTAAAGATCTATTT] [+] EMBL SMAA69071 [GGAGAGAGAGAGGTTGGAAGCTGATCCATCCAACTTTTGCGTAAAGATTATTCTACTCCAAACGAAAGATTGTCTTCTGTGATATTTTTGGTGTTTTGCCTACCAACATATGTCAGAAGTCAATACAATTAAAAGACAAAATTAACATTTGCAAGTATTATGACAGCATATATGTATCTTAAAGATCTTAAAGATCTATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6798#1 ------------------------------------------------------------ consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 CCANAATTCGGCACCAGAAACAGTTGAGATTTTTTCTGACAAATTACAGAAACTTTAANT 60 consensus_6798#1 ------------------------------------------------------------ consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 ACAGTAATTACAAAATATTTCCTATTAATTACTCATGATTACATACATGACTTCAAAATA 120 consensus_6798#1 ------------------------------------------------------------ consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 TTACATAAATACTTTGCCAATACTACTCATCCTTATTGAAAAACTACATGAAATTACTTC 180 consensus_6798#1 ------------------------------------------------------------ consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 TGCATGATACTGTAAATTGGATTCAAAGTTACTGTTTATCTAAAGTTGTCATCTTCAACT 240 consensus_6798#1 ------------------------------------------------------------ consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 GACGTCAGTTAGGACGATGATTTAATTGATTGAAGCATTACAGTTTTGATCTATTTGTTT 300 consensus_6798#1 ------------------------------------------------------------ consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 AAATCGTGCTTTGTCTGTTTTTAGGCAACCGGATAGCATCATTCACTTACAACCGACTGA 360 consensus_6798#1 ------------------------------------------------------------ consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 TTTATCATTGAATGGTGACCAGTATTATGTTTATCTAATCATTTAGTCCTAATCGAATTC 420 consensus_6798#1 ------------------------------------------------------------ consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 TACCAATCAATTTGTATTGTGGTCACTAGTCTAAGTGACTCGATATCGTATGGACTATGT 480 consensus_6798#1 ------------------------------------------------------------ consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 TGAGATTTTATGTAGTTGTGCGTATTCGGCAATCAGCCTTGCTTATCCTAGGTTCCGTAC 540 consensus_6798#1 ------------------------------------------------------------ consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 CAGCTAACACTCATCATCGGTCTTGAGAGTACTGATGGTTCCTGTGGGATTCGAACCCGT 600 consensus_6798#1 ------------------------------------------------------------ consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 ATCATTCAGCCTCATTGTTTGAAAAGTTATCTCTGAGCTATTTGGGTTTCCAGTGATGAT 660 consensus_6798#1 ------------------------------------------------------------ consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 TTTACAACTGCAGAAAGTAATGCGAATCATAATGTACTTAAATTTTTGTTAACAGTGTTA 720 consensus_6798#1 ------------------------------------------------------------ consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 TGTTTTTATATTTTTTTGTTTCCAAAACAATTAGTCCACAAATTTCACGTGTCGATACTC 780 consensus_6798#1 ------------------------------------------------------------ consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 TATCAGAATCATGGGCAAATATGTGGATGAAACTGGCATCTAGTTGGTTAGCTTTAATAT 840 consensus_6798#1 ----------GACTATAGCTTGTCCACGACTGTGTATTGGTCGAAAACTTGGTGCAGTTC 50 consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 TGTATGCATGGACTATAGCTTGTCCACGACTGTGTATTGGTCGAAAACTTGGTGCAGTTC 900 consensus_6798#1 CATTTACACCGCGTACACCACGTGCTAAAATCTCACAAACTATGCCAATTGTTTAGTATG 110 consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 CATTTACACCGCGTACACCACGTGCCTAAATCTCACAAACTATGCCAATTGTTTANTATG 960 consensus_6798#1 TTTGTATGGGAGAGAGAGAGGTTGGAAGCTGATCCATCCAACTTTTGTGTAAAGATTATT 170 consensus_6798#2 --------GGAGAGAGAGAGGTTGGAAGCTGATCCATCCAACTTTTGCGTAAAGATTATT 52 consensus_6798#0 TTTGTATGGGAGAGAGAGAAGNNTGAAGCTGATCCATCCAACTTTTGTGTTAAGATATTT 1020 *********** * *********************** ** ***** ** consensus_6798#1 CTACTCCAAACGAAAGATTGTCTTCTGTGATATTTTTGGTGTTTTGCCTACCAACATATG 230 consensus_6798#2 CTACTCCAAACGAAAGATTGTCTTCTGTGATATTTTTGGTGTTTTGCCTACCAACATATG 112 consensus_6798#0 CTACTC--AACGAAAGAATGTCT-CTGTGATATTTTTGGGGTTTTGCTA--CAACAT-TG 1074 ****** ********* ***** *************** ******* ****** ** consensus_6798#1 TCATGAAGTCAATACAATTAAAAGACAAAATTAACATTTGCAAGTATTATGACAGCATAT 290 consensus_6798#2 TCA-GAAGTCAATACAATTAAAAGACAAAATTAACATTTGCAAGTATTATGACAGCATAT 171 consensus_6798#0 TCATGAAGTCA--TCCATTAAAAGACAAA--TTACATTTGCA-GTAT----ATGACGCAT 1125 *** ******* * ************* * ********* **** * * ** consensus_6798#1 ATGTATCTTAAAGATCTCATTTTTCACAGGATATTGCATAAGTTTTTTTCGCGCTTCCAT 350 consensus_6798#2 ATGTATCTTAAAGATCTTAAAGATC------TATTT------------------------ 201 consensus_6798#0 ATTGATCT--AAGATCT-ATTTTACAGA----ATTGCATAG--TTTTTCCGC---TCCAT 1173 ** **** ******* * * *** consensus_6798#1 TGAGAAAGATCCTTCTGTTACCAATATATATATATAGGACGACATGGAACACATATTTAA 410 consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 ---GAAAGACCTC---GTTAC-ATTAT-----TATTGGACAAT---GGACACATT----A 1214 consensus_6798#1 GAGTTTATTGATGGAATCATGTACCCTTTCCTTTGAAGTATGCTTATATTTAACTGTATT 470 consensus_6798#2 ------------------------------------------------------------ consensus_6798#0 AAGTTATGTGAT------ACGT---CCTTCCTGAGATGCTATTTACTGTTTAAAAGTCCT 1265 consensus_6798#1 TTAAAAAAGTTCACTTCACTTTAAAGAATTATAAATAGTA 510 consensus_6798#2 ---------------------------------------- consensus_6798#0 CCTTTAAAATTT---------------------------- 1277 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||