These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6824#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 790 fasta sequence [GAAATACATTTGATATGCATTGAAATCATCACCATTACCAATGACAAAATAACAAACAATATGATTTTCCTGAAATAGATGAATCTAAATTAAAACAAAACCAAAAAGAACGACTGAAAAACAAACAAACAGGACAAACAAAATTATTCACACTTTTCTTTACAAGAAGTAGAATGAGTTAAAATACTTTCTTTTAGTCTTGCAATTGTCATAAAAATGTATATGGGAGAAAATG-TTGGGTTACTAATATGAATAGATCTTATGGAATTGTACATAGGATAGGAAGATTTGAAAACCAAACACACACACACACCTCGTCATATCATTTAAGAGAGGTTTGGCTTGAATTGGTAGCAGCAGTGGTAATCAGTTGATTAGGAGACGTAACGCTAGAAAGATTTAATGGTAAAAATAATCTACAGGGAAAAATATCCCGGAGTTATTGTTTTTCCATTGATTTTTGAACGACGTTTTCCACTAGGTTCCCAGCAATACCAGTTGTACTGTTTAACACTGAATCTATATCTTCCGAATGTTCAAGAACGAAAGGTCGAATCAAGCGTCGATAAATAAGCAAGGATCCATTTTGTGAGATAGGAATCATGCAATAAATTAGGAAGGCGCACTTTATTATGGGATATAACGGTAAGTAATAAACCATCATTGCTGTACAGGCCTCGAAAAGTTGAACGGAAGCAAAAACAACCCAGTAGGTTAGCCATTTTGTGTCGTCTTCTTTCTCGTGAGTTTCTATGGCTTTAACCCTCGTGCCGAATTTTTGGCCTCGTAG] [+] EMBL CD076544 [GAAATACATTTGATATGCATTGAAATCATCACCATTACCAATGACAAAATAACAAACAATATGATTTTCCTGAAATAGATGAATCTAAATTAAAACAAAACCAAAAAGAACGACTGAAAAACAAACAAACAGGACAAACAAAATTATTCACACTTTTCTTTACAAGAAGTAGAATGAGTTAAAATACTTTCTTTTAGTCTTGCAATTGTCATAAAAATGTATATGGGAGAAAATG TTGGGTTACTAATATGAATAGATCTTATGGAATTGTACATAGGATAGGAAGATTTGAAAACCAAACACACACACACACCTCGTCATATCATTTAAAAGAGGTTTGGCTTGAATTGGTAGCAGCAGTGGTAATCAGTTGATTAGGAGACGTAACGCTAGAAAGATTTAATGGTAAAAATAATCTACAGGGAAAAATATCCCGGAGTTATTGTTTTTCCATTGATTTTTGAACGACGTTTTCCACTAGGTTCCCA ] [-] EMBL CD082961 [ TGGGAG AAATGTTTGTGTTACTAATATGAATAGATCTTATGGAATTGTACATAGGATAGGAAGATTTGAAAACCAAACACACACACACACCTCGTCATATCATTTAAGAGAGGTTTGGCTTGAATTGGTAGCAGCAGTGGTAATCAGTTGATTAGGAGACGTAACGCTAGAAAGATTTAATGGTAAAAATAATCTACAGGGAAAAATATCCCGGAGTTATTGTTTTTCCATTGATTTTTGAACGACGTTTTCCACTAGGTTCCCAGCAATACCAGTTGTACTGTTTAACACTGAATCTATATCTTCCGAATGTTCAAGAACGAAAGGTCGAATCAAGCGTCGATAAATAAGCAAGGATCCATTTTGTGAGATAGGAATCATGCAATAAATTAGGAAGGCGCACTTTATTATGGGATATAACGGTAAGTAATAAACCATCATTGCTGTACAGGCCTCGAAAAGTTGAACGGAAGCAAAAACAACCCAGTAGGTTAGCCATTTTGTGTCGTCTTCTTTCTCGTGAGTTTCTATGGCTTTAACCCTCGTGCCGAATTTTTGGCCTCGTAG] [+] EMBL CD191136 [ TTTAAGAGAGGTTTGGCTTGAATTGGTAGCAGCAGTGGTAATCAGTTGATTAGGAGACGTAACGCTAGAAAGATTTAATGGTAAAAATAATCTACAGGGAAAAATATCCCGGAGTTATTGTTTTTCCATTGATTTTTGAACGACGTTTTCCACTAGGTTCCCAGCAATACCAGTTGTACTGTTTAACACTGAATCTATATCTTCCGAATGTTCAAGAACGAAAGGTCGAATCAAGCGTCGATAAATAAGCAAGGATCCATTTTGTGAGATAGGAATCATGCAATAAATTAGGAAGGCGCACTT ] consensusID : consensus_6824#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [TGAAATATTTTTGATAAGCATCGAAATCATCACCATTACCAAGGACATTATATCTAACAATAGGATTTTTCTGAAATAGATGAATCTAAATTAAAACAAAACCAAAAAGAACGACTGAAAAACAAACAAACGGGACAAACAAAATTATTCACACTTTTCTTTACAAGAAGCAGAATGAGTTAGAATACTTTCTTTTAATCTTGCAATAGTTATAAAAATGTATATGGGAGAAAATGTTGTGTTACTAATATGAATAGATCTTATGGAATTGTACATAGGATAGGAAGATTTGAAAACCAAACACACACACACACACCTCGTTATATCATTTAAGAGAGGTTTGGCTAGAATCGGTCTCATCAGCGGTAATCACTTGATAAGGAGACTTAACTTTAGAAAGATTTAATGGTAAAAATATCTACAGGGAAAAATATCCCGGAGTCATAGTTTTTCCATTGATTTTTGAACGACGTTTTTCACTAGGTTTCCCACAATACCAGTTGCACTGTTTAACACTGAATCTATTTNTTCCGAATGTTAAAGAACGAAAGGTTTAATCAAGCGTCGATAATTAAGCAAGGATACATTCTGNGAGATAGGATTATGCATTAGATTATGTAGGCTCCCTGTATTATTGGGATATAAACCGGGGGTAGAGGTCTTAAATAA] [+] EMBL CD076872 [TGAAATATTTTTGATAAGCATCGAAATCATCACCATTACCAAGGACATTATATCTAACAATAGGATTTTTCTGAAATAGATGAATCTAAATTAAAACAAAACCAAAAAGAACGACTGAAAAACAAACAAACGGGACAAACAAAATTATTCACACTTTTCTTTACAAGAAGCAGAATGAGTTAGAATACTTTCTTTTAATCTTGCAATAGTTATAAAAATGTATATGGGAGAAAATGTTGTGTTACTAATATGAATAGATCTTATGGAATTGTACATAGGATAGGAAGATTTGAAAACCAAACACACACACACACACCTCGTTATATCATTTAAGAGAGGTTTGGCTAGAATCGGTCTCATCAGCGGTAATCACTTGATAAGGAGACTTAACTTTAGAAAGATTTAATGGTAAAAATATCTACAGGGAAAAATATCCCGGAGTCATAGTTTTTCCATTGATTTTTGAACGACGTTTTTCACTAGGTTTCCCACAATACCAGTTGCACTGTTTAACACTGAATCTATTTNTTCCGAATGTTAAAGAACGAAAGGTTTAATCAAGCGTCGATAATTAAGCAAGGATACATTCTGNGAGATAGGATTATGCATTAGATTATGTAGGCTCCCTGTATTATTGGGATATAAACCGGGGGTAGAGGTCTTAAATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6824#0 -GAAATACATTTGATATGCATTGAAATCATCACCATTACCAATGACAAAATAACAAACAA 59 consensus_6824#1 TGAAATATTTTTGATAAGCATCGAAATCATCACCATTACCAAGGACATTATATCTAACAA 60 ****** ******* **** ******************** **** *** * ***** consensus_6824#0 TATGATTTTCCTGAAATAGATGAATCTAAATTAAAACAAAACCAAAAAGAACGACTGAAA 119 consensus_6824#1 TAGGATTTTTCTGAAATAGATGAATCTAAATTAAAACAAAACCAAAAAGAACGACTGAAA 120 ** ****** ************************************************** consensus_6824#0 AACAAACAAACAGGACAAACAAAATTATTCACACTTTTCTTTACAAGAAGTAGAATGAGT 179 consensus_6824#1 AACAAACAAACGGGACAAACAAAATTATTCACACTTTTCTTTACAAGAAGCAGAATGAGT 180 *********** ************************************** ********* consensus_6824#0 TAAAATACTTTCTTTTAGTCTTGCAATTGTCATAAAAATGTATATGGGAGAAAATGTTGG 239 consensus_6824#1 TAGAATACTTTCTTTTAATCTTGCAATAGTTATAAAAATGTATATGGGAGAAAATGTTGT 240 ** ************** ********* ** **************************** consensus_6824#0 GTTACTAATATGAATAGATCTTATGGAATTGTACATAGGATAGGAAGATTTGAAAACCAA 299 consensus_6824#1 GTTACTAATATGAATAGATCTTATGGAATTGTACATAGGATAGGAAGATTTGAAAACCAA 300 ************************************************************ consensus_6824#0 ACACACACACACAC--CTCGTCATATCATTTAAGAGAGGTTTGGCTTGAATTGGTAGCAG 357 consensus_6824#1 ACACACACACACACACCTCGTTATATCATTTAAGAGAGGTTTGGCTAGAATCGGTCTCAT 360 ************** ***** ************************ **** *** ** consensus_6824#0 CAGTGGTAATCAGTTGATTAGGAGACGTAACGCTAGAAAGATTTAATGGTAAAAATAATC 417 consensus_6824#1 CAGCGGTAATCACTTGATAAGGAGACTTAACTTTAGAAAGATTTAATGGTAAAAATA-TC 419 *** ******** ***** ******* **** ************************ ** consensus_6824#0 TACAGGGAAAAATATCCCGGAGTTATTGTTTTTCCATTGATTTTTGAACGACGTTTTCCA 477 consensus_6824#1 TACAGGGAAAAATATCCCGGAGTCATAGTTTTTCCATTGATTTTTGAACGACGTTTTTCA 479 *********************** ** ****************************** ** consensus_6824#0 CTAGGTTCCCAGCAATACCAGTTGTACTGTTTAACACTGAATCTATATCTTCCGAATGTT 537 consensus_6824#1 CTAGGTTTCCCACAATACCAGTTGCACTGTTTAACACTGAATCTATTTNTTCCGAATGTT 539 ******* ** ************ ********************* * *********** consensus_6824#0 CAAGAACGAAAGGTCGAATCAAGCGTCGATAAATAAGCAAGGATCCATTTTGTGAGATAG 597 consensus_6824#1 AAAGAACGAAAGGTTTAATCAAGCGTCGATAATTAAGCAAGGATACATTCTGNGAGATAG 599 ************* **************** *********** **** ** ******* consensus_6824#0 GAATCATGCAATAAATTAGGAAGGCGCACTTTATTAT-GGGATATAACGGTAAGTAATAA 656 consensus_6824#1 GA-TTATGCATTAGATTATGTAGGCTCCCTGTATTATTGGGATATAAACCGGGGGTAGAG 658 ** * ***** ** **** * **** * ** ****** ********* * * * consensus_6824#0 ACCATCATTGCTGTACAGGCCTCGAAAAGTTGAACGGAAGCAAAAACAACCCAGTAGGTT 716 consensus_6824#1 GTCTTAAATAA------------------------------------------------- 669 * * * * consensus_6824#0 AGCCATTTTGTGTCGTCTTCTTTCTCGTGAGTTTCTATGGCTTTAACCCTCGTGCCGAAT 776 consensus_6824#1 ------------------------------------------------------------ consensus_6824#0 TTTTGGCCTCGTAG 790 consensus_6824#1 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||