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Schistosoma mansoni
cluster # 6824 cluster # 6824       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6824#0 length = 790 sequences # 3  
consensus_6824#1 length = 669 sequences # 1  

consensusID : consensus_6824#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 790
fasta sequence
                              [GAAATACATTTGATATGCATTGAAATCATCACCATTACCAATGACAAAATAACAAACAATATGATTTTCCTGAAATAGATGAATCTAAATTAAAACAAAACCAAAAAGAACGACTGAAAAACAAACAAACAGGACAAACAAAATTATTCACACTTTTCTTTACAAGAAGTAGAATGAGTTAAAATACTTTCTTTTAGTCTTGCAATTGTCATAAAAATGTATATGGGAGAAAATG-TTGGGTTACTAATATGAATAGATCTTATGGAATTGTACATAGGATAGGAAGATTTGAAAACCAAACACACACACACACCTCGTCATATCATTTAAGAGAGGTTTGGCTTGAATTGGTAGCAGCAGTGGTAATCAGTTGATTAGGAGACGTAACGCTAGAAAGATTTAATGGTAAAAATAATCTACAGGGAAAAATATCCCGGAGTTATTGTTTTTCCATTGATTTTTGAACGACGTTTTCCACTAGGTTCCCAGCAATACCAGTTGTACTGTTTAACACTGAATCTATATCTTCCGAATGTTCAAGAACGAAAGGTCGAATCAAGCGTCGATAAATAAGCAAGGATCCATTTTGTGAGATAGGAATCATGCAATAAATTAGGAAGGCGCACTTTATTATGGGATATAACGGTAAGTAATAAACCATCATTGCTGTACAGGCCTCGAAAAGTTGAACGGAAGCAAAAACAACCCAGTAGGTTAGCCATTTTGTGTCGTCTTCTTTCTCGTGAGTTTCTATGGCTTTAACCCTCGTGCCGAATTTTTGGCCTCGTAG]

[+] EMBL CD076544             [GAAATACATTTGATATGCATTGAAATCATCACCATTACCAATGACAAAATAACAAACAATATGATTTTCCTGAAATAGATGAATCTAAATTAAAACAAAACCAAAAAGAACGACTGAAAAACAAACAAACAGGACAAACAAAATTATTCACACTTTTCTTTACAAGAAGTAGAATGAGTTAAAATACTTTCTTTTAGTCTTGCAATTGTCATAAAAATGTATATGGGAGAAAATG TTGGGTTACTAATATGAATAGATCTTATGGAATTGTACATAGGATAGGAAGATTTGAAAACCAAACACACACACACACCTCGTCATATCATTTAAAAGAGGTTTGGCTTGAATTGGTAGCAGCAGTGGTAATCAGTTGATTAGGAGACGTAACGCTAGAAAGATTTAATGGTAAAAATAATCTACAGGGAAAAATATCCCGGAGTTATTGTTTTTCCATTGATTTTTGAACGACGTTTTCCACTAGGTTCCCA                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD082961             [                                                                                                                                                                                                                               TGGGAG AAATGTTTGTGTTACTAATATGAATAGATCTTATGGAATTGTACATAGGATAGGAAGATTTGAAAACCAAACACACACACACACCTCGTCATATCATTTAAGAGAGGTTTGGCTTGAATTGGTAGCAGCAGTGGTAATCAGTTGATTAGGAGACGTAACGCTAGAAAGATTTAATGGTAAAAATAATCTACAGGGAAAAATATCCCGGAGTTATTGTTTTTCCATTGATTTTTGAACGACGTTTTCCACTAGGTTCCCAGCAATACCAGTTGTACTGTTTAACACTGAATCTATATCTTCCGAATGTTCAAGAACGAAAGGTCGAATCAAGCGTCGATAAATAAGCAAGGATCCATTTTGTGAGATAGGAATCATGCAATAAATTAGGAAGGCGCACTTTATTATGGGATATAACGGTAAGTAATAAACCATCATTGCTGTACAGGCCTCGAAAAGTTGAACGGAAGCAAAAACAACCCAGTAGGTTAGCCATTTTGTGTCGTCTTCTTTCTCGTGAGTTTCTATGGCTTTAACCCTCGTGCCGAATTTTTGGCCTCGTAG]
[+] EMBL CD191136             [                                                                                                                                                                                                                                                                                                                                      TTTAAGAGAGGTTTGGCTTGAATTGGTAGCAGCAGTGGTAATCAGTTGATTAGGAGACGTAACGCTAGAAAGATTTAATGGTAAAAATAATCTACAGGGAAAAATATCCCGGAGTTATTGTTTTTCCATTGATTTTTGAACGACGTTTTCCACTAGGTTCCCAGCAATACCAGTTGTACTGTTTAACACTGAATCTATATCTTCCGAATGTTCAAGAACGAAAGGTCGAATCAAGCGTCGATAAATAAGCAAGGATCCATTTTGTGAGATAGGAATCATGCAATAAATTAGGAAGGCGCACTT                                                                                                                                                                  ]


>consensus_6824#0 GAAATACATTTGATATGCATTGAAATCATCACCATTACCAATGACAAAATAACAAACAAT ATGATTTTCCTGAAATAGATGAATCTAAATTAAAACAAAACCAAAAAGAACGACTGAAAA ACAAACAAACAGGACAAACAAAATTATTCACACTTTTCTTTACAAGAAGTAGAATGAGTT AAAATACTTTCTTTTAGTCTTGCAATTGTCATAAAAATGTATATGGGAGAAAATGTTGGG TTACTAATATGAATAGATCTTATGGAATTGTACATAGGATAGGAAGATTTGAAAACCAAA CACACACACACACCTCGTCATATCATTTAAGAGAGGTTTGGCTTGAATTGGTAGCAGCAG TGGTAATCAGTTGATTAGGAGACGTAACGCTAGAAAGATTTAATGGTAAAAATAATCTAC AGGGAAAAATATCCCGGAGTTATTGTTTTTCCATTGATTTTTGAACGACGTTTTCCACTA GGTTCCCAGCAATACCAGTTGTACTGTTTAACACTGAATCTATATCTTCCGAATGTTCAA GAACGAAAGGTCGAATCAAGCGTCGATAAATAAGCAAGGATCCATTTTGTGAGATAGGAA TCATGCAATAAATTAGGAAGGCGCACTTTATTATGGGATATAACGGTAAGTAATAAACCA TCATTGCTGTACAGGCCTCGAAAAGTTGAACGGAAGCAAAAACAACCCAGTAGGTTAGCC ATTTTGTGTCGTCTTCTTTCTCGTGAGTTTCTATGGCTTTAACCCTCGTGCCGAATTTTT GGCCTCGTAG



consensusID : consensus_6824#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence
                              [TGAAATATTTTTGATAAGCATCGAAATCATCACCATTACCAAGGACATTATATCTAACAATAGGATTTTTCTGAAATAGATGAATCTAAATTAAAACAAAACCAAAAAGAACGACTGAAAAACAAACAAACGGGACAAACAAAATTATTCACACTTTTCTTTACAAGAAGCAGAATGAGTTAGAATACTTTCTTTTAATCTTGCAATAGTTATAAAAATGTATATGGGAGAAAATGTTGTGTTACTAATATGAATAGATCTTATGGAATTGTACATAGGATAGGAAGATTTGAAAACCAAACACACACACACACACCTCGTTATATCATTTAAGAGAGGTTTGGCTAGAATCGGTCTCATCAGCGGTAATCACTTGATAAGGAGACTTAACTTTAGAAAGATTTAATGGTAAAAATATCTACAGGGAAAAATATCCCGGAGTCATAGTTTTTCCATTGATTTTTGAACGACGTTTTTCACTAGGTTTCCCACAATACCAGTTGCACTGTTTAACACTGAATCTATTTNTTCCGAATGTTAAAGAACGAAAGGTTTAATCAAGCGTCGATAATTAAGCAAGGATACATTCTGNGAGATAGGATTATGCATTAGATTATGTAGGCTCCCTGTATTATTGGGATATAAACCGGGGGTAGAGGTCTTAAATAA]

[+] EMBL CD076872             [TGAAATATTTTTGATAAGCATCGAAATCATCACCATTACCAAGGACATTATATCTAACAATAGGATTTTTCTGAAATAGATGAATCTAAATTAAAACAAAACCAAAAAGAACGACTGAAAAACAAACAAACGGGACAAACAAAATTATTCACACTTTTCTTTACAAGAAGCAGAATGAGTTAGAATACTTTCTTTTAATCTTGCAATAGTTATAAAAATGTATATGGGAGAAAATGTTGTGTTACTAATATGAATAGATCTTATGGAATTGTACATAGGATAGGAAGATTTGAAAACCAAACACACACACACACACCTCGTTATATCATTTAAGAGAGGTTTGGCTAGAATCGGTCTCATCAGCGGTAATCACTTGATAAGGAGACTTAACTTTAGAAAGATTTAATGGTAAAAATATCTACAGGGAAAAATATCCCGGAGTCATAGTTTTTCCATTGATTTTTGAACGACGTTTTTCACTAGGTTTCCCACAATACCAGTTGCACTGTTTAACACTGAATCTATTTNTTCCGAATGTTAAAGAACGAAAGGTTTAATCAAGCGTCGATAATTAAGCAAGGATACATTCTGNGAGATAGGATTATGCATTAGATTATGTAGGCTCCCTGTATTATTGGGATATAAACCGGGGGTAGAGGTCTTAAATAA]


>consensus_6824#1 TGAAATATTTTTGATAAGCATCGAAATCATCACCATTACCAAGGACATTATATCTAACAA TAGGATTTTTCTGAAATAGATGAATCTAAATTAAAACAAAACCAAAAAGAACGACTGAAA AACAAACAAACGGGACAAACAAAATTATTCACACTTTTCTTTACAAGAAGCAGAATGAGT TAGAATACTTTCTTTTAATCTTGCAATAGTTATAAAAATGTATATGGGAGAAAATGTTGT GTTACTAATATGAATAGATCTTATGGAATTGTACATAGGATAGGAAGATTTGAAAACCAA ACACACACACACACACCTCGTTATATCATTTAAGAGAGGTTTGGCTAGAATCGGTCTCAT CAGCGGTAATCACTTGATAAGGAGACTTAACTTTAGAAAGATTTAATGGTAAAAATATCT ACAGGGAAAAATATCCCGGAGTCATAGTTTTTCCATTGATTTTTGAACGACGTTTTTCAC TAGGTTTCCCACAATACCAGTTGCACTGTTTAACACTGAATCTATTTNTTCCGAATGTTA AAGAACGAAAGGTTTAATCAAGCGTCGATAATTAAGCAAGGATACATTCTGNGAGATAGG ATTATGCATTAGATTATGTAGGCTCCCTGTATTATTGGGATATAAACCGGGGGTAGAGGT CTTAAATAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6824#0      -GAAATACATTTGATATGCATTGAAATCATCACCATTACCAATGACAAAATAACAAACAA 59
consensus_6824#1      TGAAATATTTTTGATAAGCATCGAAATCATCACCATTACCAAGGACATTATATCTAACAA 60
                       ******  ******* **** ******************** ****  *** * *****

consensus_6824#0      TATGATTTTCCTGAAATAGATGAATCTAAATTAAAACAAAACCAAAAAGAACGACTGAAA 119
consensus_6824#1      TAGGATTTTTCTGAAATAGATGAATCTAAATTAAAACAAAACCAAAAAGAACGACTGAAA 120
                      ** ****** **************************************************

consensus_6824#0      AACAAACAAACAGGACAAACAAAATTATTCACACTTTTCTTTACAAGAAGTAGAATGAGT 179
consensus_6824#1      AACAAACAAACGGGACAAACAAAATTATTCACACTTTTCTTTACAAGAAGCAGAATGAGT 180
                      *********** ************************************** *********

consensus_6824#0      TAAAATACTTTCTTTTAGTCTTGCAATTGTCATAAAAATGTATATGGGAGAAAATGTTGG 239
consensus_6824#1      TAGAATACTTTCTTTTAATCTTGCAATAGTTATAAAAATGTATATGGGAGAAAATGTTGT 240
                      ** ************** ********* ** **************************** 

consensus_6824#0      GTTACTAATATGAATAGATCTTATGGAATTGTACATAGGATAGGAAGATTTGAAAACCAA 299
consensus_6824#1      GTTACTAATATGAATAGATCTTATGGAATTGTACATAGGATAGGAAGATTTGAAAACCAA 300
                      ************************************************************

consensus_6824#0      ACACACACACACAC--CTCGTCATATCATTTAAGAGAGGTTTGGCTTGAATTGGTAGCAG 357
consensus_6824#1      ACACACACACACACACCTCGTTATATCATTTAAGAGAGGTTTGGCTAGAATCGGTCTCAT 360
                      **************  ***** ************************ **** ***  ** 

consensus_6824#0      CAGTGGTAATCAGTTGATTAGGAGACGTAACGCTAGAAAGATTTAATGGTAAAAATAATC 417
consensus_6824#1      CAGCGGTAATCACTTGATAAGGAGACTTAACTTTAGAAAGATTTAATGGTAAAAATA-TC 419
                      *** ******** ***** ******* ****  ************************ **

consensus_6824#0      TACAGGGAAAAATATCCCGGAGTTATTGTTTTTCCATTGATTTTTGAACGACGTTTTCCA 477
consensus_6824#1      TACAGGGAAAAATATCCCGGAGTCATAGTTTTTCCATTGATTTTTGAACGACGTTTTTCA 479
                      *********************** ** ****************************** **

consensus_6824#0      CTAGGTTCCCAGCAATACCAGTTGTACTGTTTAACACTGAATCTATATCTTCCGAATGTT 537
consensus_6824#1      CTAGGTTTCCCACAATACCAGTTGCACTGTTTAACACTGAATCTATTTNTTCCGAATGTT 539
                      ******* **  ************ ********************* * ***********

consensus_6824#0      CAAGAACGAAAGGTCGAATCAAGCGTCGATAAATAAGCAAGGATCCATTTTGTGAGATAG 597
consensus_6824#1      AAAGAACGAAAGGTTTAATCAAGCGTCGATAATTAAGCAAGGATACATTCTGNGAGATAG 599
                       *************  **************** *********** **** ** *******

consensus_6824#0      GAATCATGCAATAAATTAGGAAGGCGCACTTTATTAT-GGGATATAACGGTAAGTAATAA 656
consensus_6824#1      GA-TTATGCATTAGATTATGTAGGCTCCCTGTATTATTGGGATATAAACCGGGGGTAGAG 658
                      ** * ***** ** **** * **** * ** ****** *********      *  * * 

consensus_6824#0      ACCATCATTGCTGTACAGGCCTCGAAAAGTTGAACGGAAGCAAAAACAACCCAGTAGGTT 716
consensus_6824#1      GTCTTAAATAA------------------------------------------------- 669
                        * * * *                                                   

consensus_6824#0      AGCCATTTTGTGTCGTCTTCTTTCTCGTGAGTTTCTATGGCTTTAACCCTCGTGCCGAAT 776
consensus_6824#1      ------------------------------------------------------------
                                                                                  

consensus_6824#0      TTTTGGCCTCGTAG 790
consensus_6824#1      --------------
                                    




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)