These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6839#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 921 fasta sequence [NAGCCAAGATTCGGCACGAGGCCCATCTACTATTCATTGTATTCGATATAGCTTTATTGGCATTACCTATTAGAACATTAGATGTCTTAGCTAATTACAATACAATTTTAGATTATTTTAAACCAGTGATCTTCCCAGTTGTCATCTTTACAGGGATTCTTGGACTATTGAGTGTTTTTATAGGTTTCATTGGATTATGGAAAAAGAAGACTGTTTTCATTTTGGTGCACATTGTCGGGTTGACTATTGCAACAATTATTGAAATCTCTATATCTATAAGATCAAGTTTACGGAAAAATCAGTTCTTCAAAGTAGCTAATCAATCATTATGGAATTCTATTCAATATTATGAAAAACATCCAAATTATGAAAATCAAGTGGATAATCTACAAAGAGAGTTTTTTTGTTGTGGTGTTAGATCATATACAGATTATAAAAGACCGGTAATTACCCTACCACTTTCTTGTAAAACAGGCAATTCAATTCATCCAAAAGGTTGTGCTGAAGCCCTATATGATTATATACAACATTGTATCATGATAATAATATATATATGCATTGCATTCGCTATCATTAAAGCTATCTATTTGGCCACTTCTATTCTTCTATATCGTAAATCTGAGAAGAATAATTTATCTGTATAAATCTGTTTTTCCGGGGGGGTGGGCCGGACTCAAATGATGAAGATGTTGGTTGATGTTGCTAAATTTGAACTATATACTTCATATATTGACTAATTTGTGTAACACAAATCGATTGATTATTGAACTAATTAAAGGGGATATAATATAACTCATCAATATGCTATTTCATTTCACTTTTTTTCCCCAAATGTTAACTTACCCCCCTTCATTTATGTGTGTTATTTGTATTTTTGATCAGAAGGGGTATTTTTGTTGAAAAATAATTTATACTACTAAT] [+] EMBL CD083224 [NAGCCAAGATTCGGCACGAGGCCCATCTACTATTCATTGTATTCGATATAGCTTTATTGGCATTACCTATTAGAACATTAGATGTCTTAGCTAATTACAATACAATTTTAGATTATTTTAAACCAGTGATCTTCCCAGTTGTCATCTTTACAGGGATTCTTGGACTATTGAGTGTTTTTATAGGTTTCATTGGATTATGGAAAAAGAAGACTGTTTTCATTTTGGTGCACATTGTCGGGTTGACTATTGCAACAATTATTGAAATCTCTATATCTATAAGATCAAGTTTACGGAAAAATCAGTTCTTCAAAGTAGCTAATCAATCATTATGGAATTCTATTCAATATTATGAAAAACATCCAAATTATGAAAATCAAGTGGATAATCTACAAAGAGAGTTTTTTTGTTGTGGTGTTAGATCATATACAGATTATAAAAGACCGGTAATTACCCTACCACTTTCTTGTAAAACAGGCAATTCAATTCATCCAAAAGGTTGTGCTGAAGCCCTATATGATTATATACAACATTGTATCATGATAATAATATATATATGCATTGCATTCGCTATCATTAAAGCTATCTATTTGGCCACTTCTATTCTTCTATATCG ] [-] EMBL CD192286 [ CTATTCAATATTATGAAAAACATCCAAATTATGAAAATCAAGTGGATAATCTACAAAGAGAGTTTTTTTGTTGTGGTGTTAGATCATATACAGATTATAAAAGACCGGTAATTACCCTACCACTTTCTTGTAAAACAGGCAATTCAATTCATCCAAAAGGTTGTGCTGAAGCCCTATATGATTATATACAACATTGTATCATGATAATAATATATATATGCATTGCATTCGCTATCATTAAAGCTATCTATTTGGCCACTTCTATTCTTTTATATCGTAAATCTGAGAAGAATAATTTATCTGTATAAATCTGTTTTTCCGGGGGGGTGGGCCGGACTCAAATGATGAAG ] [-] EMBL CD076795 [ TGAAAATCAAGTGGATAATCTACAAAGAGAGTTTTTTTGTTGTGGTGTTAGATCATATACAGATTATAAAAGACCGGTAATTACCCTACCACTTTTTTGTAAAACAGGCAATTCAATTCATCCAAAAGGTTGTGCTGAAGCCCTATATGATTATATACAACATTGTATCATGATAATAATATATATATGCATTGCATTCGCTATCATTAAAGCTATCTATTTGGCCACTTCTATTCTTCTATATCGTAAATCTGAGAAGAATAATTTATCTGTATAAATCTGTTTTTCCGGGGGGGTGGGCCGGACTCAAATGATGAAGATGTTGGTTGATGTTGCTAAATTTGAACTATATACTTCATATATTGACTAATTTGTGTAACACAAATCGATTGATTATTGAACTAATTAAAGGGGATATAATATAACTCATCAATATGCTATTTCATTTCACTTTTTTTCCCCAAATGTTAACTTACCCCCCTTCATTTATGTGTGTTATTTGTATTTTTGATCAGAAGGGGTATTTTTGTTGAAAAATAATTTATACTACTAAT] consensusID : consensus_6839#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence [ACAGATTATAAAAGACCGGTAATTACCCTACCACTTTCTNGTAAAACAGGCAATTCAATTCATCCAAAAGGTTGTGCTGAAGCCCTATATGATTATATACAACATGTATCATGATAATAATATATATATGCATGCATTCGCTATCATTAAAGCTATCTATTTGGCACTTCTATTCTTCTATATCGTAAATCTGAGAAGAATAATTTATCTGTATAAATCTGTNTNNCCGGGGGGGTGGGCCGGACTCAAATGATGAAGATGTTGGTTGATGTCGCTAAATCTGAACTATATACTTCATATATTGACTAATTGNGTAACACAAATCGATGATTATTGAACTAATTAAGGGAATATAATATTACTCANCAATATGCTATTCATTNCACTTNTCTNNCCCANTGTAACTTACCCCCNCCANTATGTGTGTTATTGGTTTTTGGACAGAGGGGTTTTTGGGGGAAATANTTNTCTACT] [+] EMBL SM955 [ACAGATTATAAAAGACCGGTAATTACCCTACCACTTTCTNGTAAAACAGGCAATTCAATTCATCCAAAAGGTTGTGCTGAAGCCCTATATGATTATATACAACATGTATCATGATAATAATATATATATGCATGCATTCGCTATCATTAAAGCTATCTATTTGGCACTTCTATTCTTCTATATCGTAAATCTGAGAAGAATAATTTATCTGTATAAATCTGTNTNNCCGGGGGGGTGGGCCGGACTCAAATGATGAAGATGTTGGTTGATGTCGCTAAATCTGAACTATATACTTCATATATTGACTAATTGNGTAACACAAATCGATGATTATTGAACTAATTAAGGGAATATAATATTACTCANCAATATGCTATTCATTNCACTTNTCTNNCCCANTGTAACTTACCCCCNCCANTATGTGTGTTATTGGTTTTTGGACAGAGGGGTTTTTGGGGGAAATANTTNTCTACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6839#0 NAGCCAAGATTCGGCACGAGGCCCATCTACTATTCATTGTATTCGATATAGCTTTATTGG 60 consensus_6839#1 ------------------------------------------------------------ consensus_6839#0 CATTACCTATTAGAACATTAGATGTCTTAGCTAATTACAATACAATTTTAGATTATTTTA 120 consensus_6839#1 ------------------------------------------------------------ consensus_6839#0 AACCAGTGATCTTCCCAGTTGTCATCTTTACAGGGATTCTTGGACTATTGAGTGTTTTTA 180 consensus_6839#1 ------------------------------------------------------------ consensus_6839#0 TAGGTTTCATTGGATTATGGAAAAAGAAGACTGTTTTCATTTTGGTGCACATTGTCGGGT 240 consensus_6839#1 ------------------------------------------------------------ consensus_6839#0 TGACTATTGCAACAATTATTGAAATCTCTATATCTATAAGATCAAGTTTACGGAAAAATC 300 consensus_6839#1 ------------------------------------------------------------ consensus_6839#0 AGTTCTTCAAAGTAGCTAATCAATCATTATGGAATTCTATTCAATATTATGAAAAACATC 360 consensus_6839#1 ------------------------------------------------------------ consensus_6839#0 CAAATTATGAAAATCAAGTGGATAATCTACAAAGAGAGTTTTTTTGTTGTGGTGTTAGAT 420 consensus_6839#1 ------------------------------------------------------------ consensus_6839#0 CATATACAGATTATAAAAGACCGGTAATTACCCTACCACTTTCTTGTAAAACAGGCAATT 480 consensus_6839#1 -----ACAGATTATAAAAGACCGGTAATTACCCTACCACTTTCTNGTAAAACAGGCAATT 55 *************************************** *************** consensus_6839#0 CAATTCATCCAAAAGGTTGTGCTGAAGCCCTATATGATTATATACAACATTGTATCATGA 540 consensus_6839#1 CAATTCATCCAAAAGGTTGTGCTGAAGCCCTATATGATTATATACAACAT-GTATCATGA 114 ************************************************** ********* consensus_6839#0 TAATAATATATATATGCATTGCATTCGCTATCATTAAAGCTATCTATTTGGCCACTTCTA 600 consensus_6839#1 TAATAATATATATATGCAT-GCATTCGCTATCATTAAAGCTATCTATTTGGC-ACTTCTA 172 ******************* ******************************** ******* consensus_6839#0 TTCTTCTATATCGTAAATCTGAGAAGAATAATTTATCTGTATAAATCTGTTTTTCCGGGG 660 consensus_6839#1 TTCTTCTATATCGTAAATCTGAGAAGAATAATTTATCTGTATAAATCTGTNTNNCCGGGG 232 ************************************************** * ****** consensus_6839#0 GGGTGGGCCGGACTCAAATGATGAAGATGTTGGTTGATGTTGCTAAATTTGAACTATATA 720 consensus_6839#1 GGGTGGGCCGGACTCAAATGATGAAGATGTTGGTTGATGTCGCTAAATCTGAACTATATA 292 **************************************** ******* *********** consensus_6839#0 CTTCATATATTGACTAATTTGTGTAACACAAATCGATTGATTATTGAACTAATTAAAGGG 780 consensus_6839#1 CTTCATATATTGACTAATT-GNGTAACACAAATCGAT-GATTATTGAACTAATTAA-GGG 349 ******************* * *************** ****************** *** consensus_6839#0 GATATAATATAACTCATCAATATGCTATTTCATTTCACTTTTTTTCCCCAAATGTTAACT 840 consensus_6839#1 AATATAATATTACTCANCAATATGCTATT-CATTNCACTTNTCTNNCCCAN-TGT-AACT 406 ********* ***** ************ **** ***** * * **** *** **** consensus_6839#0 TACCCCCCTTCATTTATGTGTGTTATTTGTATTTTTGATCAGAAGGGGTATTTTTGTTGA 900 consensus_6839#1 TACCCCCNCCANT--ATGTGTGTTATTGGT--TTTTGGACAGAGGGG---TTTTTGGGGG 459 ******* * ************ ** ***** **** *** ****** * consensus_6839#0 AAAATAATTTATACTACTAAT 921 consensus_6839#1 AAATANTTNTCTACT------ 474 *** * * **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||