These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6841#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 683 fasta sequence [CCAAATTTCGGCACGAGGGCANATATCACCGAATACTAGTATCCAACCAATGTATTGCTCTTCTGATACACTTGGTGAAGAGTTGGCACAATATGTAAGTGGTCGTTTTTTATTCCTGTACAATTTTTTTTCAACTTTAATCAAAGCACTTGTATTTTAGTTGGTAAGAATTAAAATCAGCCAGCAAAGTATTTGGTACCTATGAACAAAGAGATCTTTCAGATTTGGAAAACTATTAAATACTCCCTGAACACGGTTTCGCTCTCATCTTGTTTTATTGGTTCGAAAATATGGCAAAAGACATTAGTTGACTACTACTTTAGCCCCTAAGTTCTGACAAGAGTCAATAATAAGAATATTCTTAAATATGACCGTATGTTTCCCTCCACATCAACTGCTTTTGACGCTTCAACAACTGCCCTGTCTGCAATACCTCCTCTGGAAACGACTGAAACAGATGACTTACTTTCGAAAACACTTGGATTATTTCAGTCTACTGGAAAACAGAAGCATAATCTAGAATTGTTTTCTTGCTCGAAATGCGTGGGAGATGTTCTTGTAATATGATTGCAACTTTGACAAAAAAACATGGCTGATACTTTCTGAAAATAACATTTAACCTCAAATTCTTTCTATACTTCCACTTACCAGATCTAACTCGCTAAAAATAAAATAAAAAAAAA] [+] EMBL CD083228 [CCAAATTTCGGCACGAGGGCANATATCACCGAATACTAGTATCCAACCAATGTATTGCTCTTCTGATACACTTGGTGAAGAGTTGGCACAATATGTAAGTGGTCGTTTTTTATTCCTGTACAATTTTTTTTCAACTTTAATCAAAGCACTTGTATTTTAGTTGGTAAGAATTAAAATCAGCCAGCAAAGTATTTGGTACCTATGAACAAAGAGATCTTTCAGATTTGGAAAACTATTAAATACTCCCTGAACACGGTTTCGCTCTCATCTTGTTTTATTGGTTCGAAAATATGGCAAAAGACATTAGTTGACTACTACTTTAGCCCCTAAGTTCTGACAAGAGTCAATAATAAGAATATTCTTAAATATGACCGTATGTTTCCCTCCACATCAACTGCTTTTGACGCTTCAACAACTGCCCTGTCTGCAATACCTCCTCTGGAAACGACTGAAACAGATGACTTACTTTCGAAAACACTTGGATTATTTCAGTCTACTGGAAAACAGAAGCATAATCTAGAATTGTTTTCTTGCTCGAAATGCGTGGGAGATGTTCTTGTAATATGATTGCAACTTTGAC AAAAAACATGGCTGATACTNTCTGAAAAT ACATTTAACCTCNAATTCT ] [-] EMBL CD076799 [ ACTTGGTGAAGAGTTGGCACAATATGTAAGTGGTCGTTTTTTATTCCTGTACAATTTTTTTTCAACTTTAATCAAAGCACTTGTATTTTAGTTGGTAAGAATTAAAATCAGCCAGCAAAGTATTTGGTACCTATGAACAAAGAGATCTTTCAGATTTGGAAAACTATTAAATACTCCCTGAACACGGTTTCGCTCTCATCTTGTTTTATTGGTTCGAAAATATGGCAAAAGACATTAGTTGACTACTACTTTAGCCCCTAAGTTCTGACAAGAGTCAATAATAAGAATATTCTTAAATATGCCCGTATGTTTCCCTCCACATCAACTGCTTTTGACGCTTCAACAACTGCCCTGTCTGCAATACCTCCTCTGGAAACGACTGAAACAGATGACTTACTTTCGAAAACACTTGGATTATTTCAGTCTACTGGAAAACAGAAGCATAATCTAGAATTGTTTTCTTGCTCGAAATGCGTGGGAGATGTTCTTGTAATATGATTGCAACTTTGACAAAAAAACATGGCTGATACTTTCTGAAAATAACATTTAACCTCAAATTCTT ] [-] EMBL AI395000 [ tttcCAATCCTTCCTTTGGAAACGATTGAACCAGTTGACTTACTTTCGAAAACACTTGGATTATTCCAGTCTACTGGAAAACAGAAGCATAATCTAGAATTGTTTTCTTGCTCGAAATGCGTGGGAGATGTTCTTGTAATATGATTGCAACTTTGACAAAAAAACATGGCTGATACTTTCTGAAAATAACATTTAACCTCAAATTCTTTCTATACTTCCACTTACCAGATCTAACTCGCTAAAAATAAAATAAAAAAAAA] consensusID : consensus_6841#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence [ACTTACTTTCCAAAACACTTGTAATATTTCAGTCTACTGGAAATCAGAAGCATAATCTAGAATTGTTTTCATGCTCAAAATGCGTGGCAGATGTTCTTGTAATATCATTGCAACTTTAGCAAAAAAAATGGGAGATACTTTCTTAAAATAACATTTAACCTCAAATTCTTTTATAATTCATTACAG] [-] EMBL AI977466 [ACTTACTTTCCAAAACACTTGTAATATTTCAGTCTACTGGAAATCAGAAGCATAATCTAGAATTGTTTTCATGCTCAAAATGCGTGGCAGATGTTCTTGTAATATCATTGCAACTTTAGCAAAAAAAATGGGAGATACTTTCTTAAAATAACATTTAACCTCAAATTCTTTTATAATTCATTACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6841#0 CCAAATTTCGGCACGAGGGCANATATCACCGAATACTAGTATCCAACCAATGTATTGCTC 60 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 TTCTGATACACTTGGTGAAGAGTTGGCACAATATGTAAGTGGTCGTTTTTTATTCCTGTA 120 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 CAATTTTTTTTCAACTTTAATCAAAGCACTTGTATTTTAGTTGGTAAGAATTAAAATCAG 180 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 CCAGCAAAGTATTTGGTACCTATGAACAAAGAGATCTTTCAGATTTGGAAAACTATTAAA 240 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 TACTCCCTGAACACGGTTTCGCTCTCATCTTGTTTTATTGGTTCGAAAATATGGCAAAAG 300 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 ACATTAGTTGACTACTACTTTAGCCCCTAAGTTCTGACAAGAGTCAATAATAAGAATATT 360 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 CTTAAATATGACCGTATGTTTCCCTCCACATCAACTGCTTTTGACGCTTCAACAACTGCC 420 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 CTGTCTGCAATACCTCCTCTGGAAACGACTGAAACAGATGACTTACTTTCGAAAACACTT 480 consensus_6841#1 ----------------------------------------ACTTACTTTCCAAAACACTT 20 ********** ********* consensus_6841#0 GGATTATTTCAGTCTACTGGAAAACAGAAGCATAATCTAGAATTGTTTTCTTGCTCGAAA 540 consensus_6841#1 GTAATATTTCAGTCTACTGGAAATCAGAAGCATAATCTAGAATTGTTTTCATGCTCAAAA 80 * * ******************* ************************** ***** *** consensus_6841#0 TGCGTGGGAGATGTTCTTGTAATATGATTGCAACTTTGACAAAAAAACATGGCTGATACT 600 consensus_6841#1 TGCGTGGCAGATGTTCTTGTAATATCATTGCAACTTTAGCAAAAAAA-ATGGGAGATACT 139 ******* ***************** *********** ******** **** ****** consensus_6841#0 TTCTGAAAATAACATTTAACCTCAAATTCTTTCTATACTTCCACTTACCAGATCTAACTC 660 consensus_6841#1 TTCTTAAAATAACATTTAACCTCAAATTCTTT-TATAATTCA--TTACAG---------- 186 **** *************************** **** *** **** consensus_6841#0 GCTAAAAATAAAATAAAAAAAAA 683 consensus_6841#1 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||