These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6875#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 730 fasta sequence [CGAGCCAAGATTCGGCACGAGGGATAGATAGAAACCCTACTGATGATTTCAAAAATGAAGATAATGATTTTATGAAAACTATTGATCATTTAGAAGAAATGTTCAATTTAGAATTGACTGATTTTTGGCATTCATCACATAATCGTGTCCTTCAATGGTTAAATAATAATACATAACCAATAATGTCAACATTAAAAGACTAATTACCAATGCATTCTTTCAGTAGATCTTATTTCATCAGTTTATATATTTGCATTCAACTAACTACTTAAATACTATTAGTCAGTAGTATTGGTTAATATGAAAGATTGAACAATAAACATGAGTAATGATTATATGTATATATAGTAGTAGTTTATCACTGTTTACGTTGTTATTCATGAAAGTGATGGTCTGAAAACAAACATACGAACAATATTGTGTATGATAATACTTAGTTATATGAGATGGTGGCAAAGATTTTGTAGTTCAGATGAATGATTTNGATGAAGTTTTGTTCTTTGAGCTGGATGGTTTTTGGTCGTGGAGTTTTCATCATCCTACTGAACGACATCATCATCAGCAGCAGTACAAACTTCAGGTAGAAGTTATGTTTATGAATGACTATTAGCTNTATCATTCATATATGTAAATAATCTATATATAGAGAGATAAGTATTCTTTGTGTTATTTCTAGTTATATTCTGATCTATTTAACTGTATATAATTGTTACTATTATCTTTTTTTCTT] [+] EMBL CD080248 [CGAGCCAAGATTCGGCACGAGGGATAGATAGAAACCCTACTGATGATTTCAAAAATGAAGATAATGATTTTATGAAAACTATTGATCATTTAGAAGAAATGTTCAATTTAGAATTGACTGATTTTTGGCATTCATCACATAATCGTGTCCTTCAATGGTTAAATAATAATACATAACCAATAATGTCAACATTAAAAGACTAATTACCAATGCATTCTTTCAGTAGATCTTATTTCATCAGTTTATATATTTGCATTCAACTAACTACTTAAATACTATTAGTCAGTAGTATTGGTTAATATGAAAGATTGAACAATAAACATGAGTAATGATTATATGTATATATAGTAGTAGTTTATCACTGTTTACGTTGTTATTCATGAAAGTGATGGTCTGAAAACAAACATACGAACAATATTGTGTATGATAATACTTAGTTATATGAGATGGTGGCAAAGATTTTGTAGTTCAGATGAATGATTTNGATGAAGTTTTGTTCTTTGAGCTGGATGGTTTTTGGTCGTGGAGTTTTCATCATCCTACTGAACGACATCATCATCAGCAGCAGTACAAACTTCAGGTAGAAGTTATGTTTATGAATGACTATTAGCTNTATCATTCATATATGTAAATAATCTATATATAGAGAGATAAGTATTCTTTGTGTTATTTCTAGTTATATTCTGATCTATTTAACTGTATATAATTGTTACTATTATCTTTTTTTCTT] consensusID : consensus_6875#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 408 fasta sequence [AGGCGCAGGAATTCGGCACGAGGATCACCATCATCACCATCATCATCATCATCACCATAATAATAATAATGAAGGTCAACAATCCTCTCTCAATGAACTTACTAATTCCATTGGAGAATGTAAAAAATGTCAATCATTTGAATCAAAACGTCATATACAGATAGATAGAAACCCTACTGATGATTTCAAAAATGAAGATAATGATTTTATGAAAACTATTGATCATTTAGAAGAAATGTTCAATTTAGAATTGACTGATTTTTGGCATTCATCACATAATCGTGTCCTTCAATGGCTAAGTAATAATACATAACCAATAATGTCAACATTATGAGACTAATTACCAATGCATTCTTTCAGTAGATCTTATTTCATCAGCTTATATATATGCATTCAACTAACTACTTA] [+] EMBL CD078160 [AGGCGCAGGAATTCGGCACGAGGATCACCATCATCACCATCATCATCATCATCACCATAATAATAATAATGAAGGTCAACAATCCTCTCTCAATGAACTTACTAATTCCATTGGAGAATGTAAAAAATGTCAATCATTTGAATCAAAACGTCATATACAGATAGATAGAAACCCTACTGATGATTTCAAAAATGAAGATAATGA ] [+] EMBL CD138392 [ ACCATAATAATAATAATGAAGGTCAACAATCCTCTCTCAATGAACTTACTAATTCCATTGGAGAATGTAAAAAATGTCAATCATTTGAATCAAAACGTCATATACAGATAGATAGAAACCCTACTGATGATTTCAAAAATGAAGATAATGATTTTATGAAAACTATTGATCATTTAGAAGAAATGTTCAATTTAGAATTGACTGATTTTTGGCATTCATCACATAATCGTGTCCTTCAATGGCTAAGTAATAATACATAACCAATAATGTCAACATTATGAGACTAATTACCAATGCATTCTTTCAGTAGATCTTATTTCATCAGCTTATATATATGCATTCAACTAACTACTTA] consensusID : consensus_6875#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence [CATGATAAATTTGTTTTCCCAAAGCATTATCCATGATCATCATCATCATATTCAGTATCACCATCATCATCACCATCATCACCATCATCATCATCACCATAATAATAATAATGAAGGTCAGCAATCCTCTCTCAATGAACTTACTAATTCCATTGGAGAATGTAAAAAATGTCAATCATTTGAATCAAAACGTCATATACAGATAGATAGAAACCCTACTGATGATTTCAAAAATGAAGATAATGATTTTATGAAAACTATTGATCATTTAGAAGAAATGTTCAATTTAGAATTGACTGATTTTTGGCATTCATCACATAATAGTGTCCTTCAATGGTTAAATAATAATACATAACCAATAATGTCAACATTAAAAGAGTAATTACCAATGC] [-] EMBL CD156439 [CATGATAAATTTGTTTTCCCAAAGCATTATCCATGATCATCATCATCATATTCAGTATCACCATCATCATCACCATCATCACCATCATCATCATCACCATAATAATAATAATGAAGGTCAGCAATCCTCTCTCAATGAACTTACTAATTCCATTGGAGAATGTAAAAAATGTCAATCATTTGAATCAAAACGTCATATACAGATAGATAGAAACCCTACTGATGATTTCAAAAATGAAGATAATGATTTTATGAAAACTATTGATCATTTAGAAGAAATGTTCAATTTAGAATTGACTGATTTTTGGCATTCATCACATAATAGTGTCCTTCAATGGTTAAATAATAATACATAACCAATAATGTCAACATTAAAAGAGTAATTACCAATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6875#1 --------------------------------------AGGCGCAGGA-ATTCGG---CA 18 consensus_6875#2 CATGATAAATTTGTTTTCCCAAAGCATTATCCATGATCATCATCATCATATTCAGTATCA 60 consensus_6875#0 ------------------------------------------------------------ consensus_6875#1 CGAGGATCACCATCATCACCATCATCATCATCATCACCATAATAATAATAATGAAGGTCA 78 consensus_6875#2 CCATCATCATCACCATCATCACCATCATCATCATCACCATAATAATAATAATGAAGGTCA 120 consensus_6875#0 ------------------------------------------------------------ consensus_6875#1 ACAATCCTCTCTCAATGAACTTACTAATTCCATTGGAGAATGTAAAAAATGTCAATCATT 138 consensus_6875#2 GCAATCCTCTCTCAATGAACTTACTAATTCCATTGGAGAATGTAAAAAATGTCAATCATT 180 consensus_6875#0 ------------------------------------------------------------ consensus_6875#1 TGAATCAAAACGTCATAT-ACAGATAGATAGAAACCCTACTGATGATTTCAAAAATGAAG 197 consensus_6875#2 TGAATCAAAACGTCATAT-ACAGATAGATAGAAACCCTACTGATGATTTCAAAAATGAAG 239 consensus_6875#0 CGAGCCAAGATTCGGCACGAGGGATAGATAGAAACCCTACTGATGATTTCAAAAATGAAG 60 ** *** * * * ************************************** consensus_6875#1 ATAATGATTTTATGAAAACTATTGATCATTTAGAAGAAATGTTCAATTTAGAATTGACTG 257 consensus_6875#2 ATAATGATTTTATGAAAACTATTGATCATTTAGAAGAAATGTTCAATTTAGAATTGACTG 299 consensus_6875#0 ATAATGATTTTATGAAAACTATTGATCATTTAGAAGAAATGTTCAATTTAGAATTGACTG 120 ************************************************************ consensus_6875#1 ATTTTTGGCATTCATCACATAATCGTGTCCTTCAATGGCTAAGTAATAATACATAACCAA 317 consensus_6875#2 ATTTTTGGCATTCATCACATAATAGTGTCCTTCAATGGTTAAATAATAATACATAACCAA 359 consensus_6875#0 ATTTTTGGCATTCATCACATAATCGTGTCCTTCAATGGTTAAATAATAATACATAACCAA 180 *********************** ************** *** ***************** consensus_6875#1 TAATGTCAACATTATGAGACTAATTACCAATGCATTCTTTCAGTAGATCTTATTTCATCA 377 consensus_6875#2 TAATGTCAACATTAAAAGAGTAATTACCAATGC--------------------------- 392 consensus_6875#0 TAATGTCAACATTAAAAGACTAATTACCAATGCATTCTTTCAGTAGATCTTATTTCATCA 240 ************** *** ************* consensus_6875#1 GCTTATATATATGCATTCAACTAACTACTTA----------------------------- 408 consensus_6875#2 ------------------------------------------------------------ consensus_6875#0 GTTTATATATTTGCATTCAACTAACTACTTAAATACTATTAGTCAGTAGTATTGGTTAAT 300 consensus_6875#1 ------------------------------------------------------------ consensus_6875#2 ------------------------------------------------------------ consensus_6875#0 ATGAAAGATTGAACAATAAACATGAGTAATGATTATATGTATATATAGTAGTAGTTTATC 360 consensus_6875#1 ------------------------------------------------------------ consensus_6875#2 ------------------------------------------------------------ consensus_6875#0 ACTGTTTACGTTGTTATTCATGAAAGTGATGGTCTGAAAACAAACATACGAACAATATTG 420 consensus_6875#1 ------------------------------------------------------------ consensus_6875#2 ------------------------------------------------------------ consensus_6875#0 TGTATGATAATACTTAGTTATATGAGATGGTGGCAAAGATTTTGTAGTTCAGATGAATGA 480 consensus_6875#1 ------------------------------------------------------------ consensus_6875#2 ------------------------------------------------------------ consensus_6875#0 TTTNGATGAAGTTTTGTTCTTTGAGCTGGATGGTTTTTGGTCGTGGAGTTTTCATCATCC 540 consensus_6875#1 ------------------------------------------------------------ consensus_6875#2 ------------------------------------------------------------ consensus_6875#0 TACTGAACGACATCATCATCAGCAGCAGTACAAACTTCAGGTAGAAGTTATGTTTATGAA 600 consensus_6875#1 ------------------------------------------------------------ consensus_6875#2 ------------------------------------------------------------ consensus_6875#0 TGACTATTAGCTNTATCATTCATATATGTAAATAATCTATATATAGAGAGATAAGTATTC 660 consensus_6875#1 ------------------------------------------------------------ consensus_6875#2 ------------------------------------------------------------ consensus_6875#0 TTTGTGTTATTTCTAGTTATATTCTGATCTATTTAACTGTATATAATTGTTACTATTATC 720 consensus_6875#1 ---------- consensus_6875#2 ---------- consensus_6875#0 TTTTTTTCTT 730 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||