These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6885#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [CGCGCATCTAGTTGTTGATTACTTTAAATTTAATAAAATTATCAGGGATCAAGACAAAAGAAGCTTGAAGATCGTTCTAATCGTTTAGCCGAAGAGGAAAAATGTAGAATGGCCATCGATCGTGAAGAGGAGAAATTTCAAGCGGAACGAAGAAAGAAAGCTGTTGATAAAGCGAAGCAGCTATTATATTACGAAACGGATCGTTTTCGATTATTACATGTAAATTCGTAGTATAACCTAATAATCCTAATGATAATTATCGTAATATCAAAACTAAAATTTACAAGTGAACTTCTGCAACTCCTAAAATAAATGTGAGAACGTTTTACCAGGTCCCAGTGATTAGTTTGTAATGGAGAAAATCACAAAAAACGAAAGATCGGGTTTTCGTTAACATTTCAACGTTCTTGTGGTTTACATTCAAACGAAACAACGCTATAGATGTTCATATATTAGGCTAAAATATATTCCTTCACGACTACCCTTATATTGATGTAGTAAATTATTAAGTCATGTCTTTATTGCTTTTACGGACTTATCCTANTAATAATGCTA] [+] EMBL CD078466 [CGCGCATCTAGTTGTTGATTACTTTAAATTTAATAAAATTATCAGGGATCAAGACAAAAGAAGCTTGAAGATCGTTCTAATCGTTTAGCCGAAGAGGAAAAATGTAGAATGGCCATCGATCGTGAAGAGGAGAAATTTCAAGCGGAACGAAGAAAGAAAGCTGTTGATAAAGCGAAGCAGCTATTATATTACGAAACGGATCGTTTTCGATTATTACATGTAAATTCGTAGTATAACCTAATAATCCTAATGATAATTATCGTAATATCAAAACTAAAATTTACAAGTGAACTTCTGCAACTCCTAAAATAAATGTGAGAACGTTTTACCAGGTCCCAGTGATTAGTTTGTAATGGAGAAAATCACAAAAAACGAAAGATCGGGTTTTCGTTAACATTTCAACGTTCTTGTGGTTTACATTCAAACGAAACAACGCTATAGATGTTCATATATTAGGCTAAAATATATTCCTTCACGACTACCCTTATATTGATGTAGTAAATTATTAAGTCATGTCTTTATTGCTTTTACGGACTTATCCTANTAATAATGCTA] consensusID : consensus_6885#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 373 fasta sequence [CTCTCACGATCGATGGCCATTCTACATTTTTCCTCTTCGGCTAAACGATTAGAACGATCTTCAAGCTTCTTTTGTCTTGATCCCAAAAGTGTATTTGTCCAATTTTTTACCATTTCTCTTGATTGTGTTTTAATTTCTCTAATCTGTAACTTCTTCTCTTCTATTTTAGCAGTTTCACTCAAATGACTATCCATTTGGTTTCTTAAACGTTTCCATTCTGATTGACTTATCAGTTTCACTCGTCTTACGTCCACAGGTGTATCATTAACAGGATTTTCAAATAAAAATTCTTTCCTGTCTCTCATTTTGGCAATGTGAAGCGGTCCACGTCTAGACGGAAGGTACTTTGTATACTAAAGGAGCATGTAGAGTA] [+] EMBL CD147375 [CTCTCACGATCGATGGCCATTCTACATTTTTCCTCTTCGGCTAAACGATTAGAACGATCTTCAAGCTTCTTTTGTCTTGATCCCAAAAGTGTATTTGTCCAATTTTTTACCATTTCTCTTGATTGTGTTTTAATTTCTCTAATCTGTAACTTCTTCTCTTCTATTTTAGCAGTTTCACTCAAATGACTATCCATTTGGTTTCTTAAACGTTTCCATTCTGATTGACTTATCAGTTTCACTCGTCTTACGTCCACAGGTGTATCACTAACAGGATTTTCAAATAAAAATTCTTTCCTGTCTCTCATTTTGGCAATGTGAAGCGGTCCACGTCTAGACGGAAGGTACTTTGTATACTANAGGAGCATGTAGAGT ] [+] EMBL CD147893 [CTCTCACGATCGATGGCCATTCTACATTTTTCCTCTTCGGCTAAACGATTAGAACGATCTTCAAGCTTCTTTTGTCTTGATCCCAAAAGTGTATTTGTCCAATTTTTTACCATTTCTCTTGATTGTGTTTTAATTTCTCTAATCTGTAACTTCTTCTCTTCTATTTTAGCAGTTTCACTCAAATGACTATCCATTTGGTTTCTTAAACGTTTCCATTCTGATTGACTTATCAGTTTCACTCGTCTTACGTCCACAGGTGTATCATTAACAGGATTTTCAAATAAAAATTCTTTCCTGTCTCTCATTTTGGCAATGTGAAGCGGTCCACGTCTAGACGGAAGGTACTTTGTATACTAAAGGAGCATGTAGAGT ] [-] EMBL CD147452 [ TCTCACGATCGATGGCCATTCTACATTTTTCCTCTTCGGCTAAACGATTAGAACGATCTTCAAGCTTCTTTTGTCTTGATCCCAAAAGTGTATTTGTCCAATTTTTTACCATTTCTCTTGATTGTGTTTTAATTTCTCTAATCTGTAACTTCTTCTCTTCTATTTTAGCAGTTTCACTCAAATGACTATCCATTTGGTTTCTTAAACGTTTCCATTCTGATTGACTTATCAGTTTCACTCGTCTTACGTCCACAGGTGTATCATTAACAGGATTTTCAAATAAAAATTCTTTCCTGTCTCTCATTTTGGCAATGTGAAGCGGTCCACGTCTAGACGGAAGGTACTTTGTATACTAAAGGAGCATGTAGAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6885#0 CGCGCATCTAGTTGTTGATTACTTTAAATTTAATAAAATTATCAGGGATCAAGACAAAAG 60 consensus_6885#1 -------------------------------------------------------CTCTC 5 consensus_6885#0 AAGCTTGAAGATCGTTCTAATCGTTTAGCCGAAGAGGAAAAATGTAGAATGGCCATCGAT 120 consensus_6885#1 ACGATCGATGGCCATTCTACATTTTTCCTCTTCGGCTAAACGATTAGAACGATCTTCAAG 65 * * * ** * * ***** *** * * *** ***** * * ** * consensus_6885#0 CGTGAAGAGGAGAAATTTCAAGCGGAACGAAGAAAGAAAGCTGTTGATAAAGCGAAGCAG 180 consensus_6885#1 CTTC-----------TTTTGTCTTGATCCCAAAAGTGTATTTGTCCA-ATTTTTTACCAT 113 * * *** ** * * ** * *** * * * ** consensus_6885#0 CTATTATATTACGAAACGGATCGTTTTCGATTATTACATGTAAATTCGTAGTATAACCTA 240 consensus_6885#1 TTCTCTTGATTGTGTTTTAATTTCTCTAATCTGTAACTTCTTCTCTTCTATTTTAGCAGT 173 * * * * ** * * * * ** * * * ** * ** * consensus_6885#0 ATAATCCTAATGATAATTATCGTAATATCAAAACTAAAATTTACAAGTGAACTTCTGCAA 300 consensus_6885#1 TTCACTCAAATGACTATCCATTTGGTTTC----TTAAACGTTTCCATTCTGATT----GA 225 * * * ***** ** * * ** **** ** * * * ** * consensus_6885#0 CTCCTAAAATAAATGTGAGAACGTTTTACCAGGTCCCAGTGATTAGTTTGTAATGGAGAA 360 consensus_6885#1 CTTATCAGTTTCACT------CGTCTTAC---GTCC-----ACAGGTGTATCATTAACAG 271 ** * * * * *** **** **** * ** * * ** * * consensus_6885#0 AATCACAAAAAACGAAAGATCGGGTTTTCGTTAACATTTCAACGTTCTT--GTGGTTTAC 418 consensus_6885#1 GATTTTCAAATA---AAAATTCTTTCCTGTCTCTCATTTTGGCAATGTGAAGCGGTCCAC 328 ** *** * ** ** * * * ***** * * * * *** ** consensus_6885#0 ATTCAAACGAAACAACGCTATAGATGTTCATATATTAGGCTAAAATATATTCCTTCACGA 478 consensus_6885#1 GTCTAGACGGAA-GGTACTTTGTATACTAAAGGAGCATG-TAGAGTA------------- 373 * * *** ** ** * ** * * * * * ** * ** consensus_6885#0 CTACCCTTATATTGATGTAGTAAATTATTAAGTCATGTCTTTATTGCTTTTACGGACTTA 538 consensus_6885#1 ------------------------------------------------------------ consensus_6885#0 TCCTANTAATAATGCTA 555 consensus_6885#1 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||